HHsearch 1.5 NAME d1sxjc1 FAM FILE d1sxjc1 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1sxjc1.a3m DATE Tue Mar 9 00:16:59 2010 LENG 95 match states, 95 columns in multiple alignment FILT 70 out of 74 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.5 EVD 0.3932 -1.4162 SEQ >ss_dssp CCHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCC >sa_dssp DEEDCBEDAAEBACEDEDEDADEBBEDBCEEDEBCBDDAAECBCECBEEDECEDEEBCDDBDDDBDECDEDBEEEEDEEEBBCCBACBACDBCEE >ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC >ss_conf 96489999999996087999999999999956999999999999999983677988899999999999889974897389999999999997549 >Consensus PxPxdIxxixxxxlxxxxxxaxxxixxlxxxxGxsxxDiixxlxxxixxxxxxxexxkxxllxxladxexrLxxGxxexiQLxaLiaxxxxxxxx >d1sxjc1 PRPSDLKAVLKSILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDYELQNEETRVHLLTKLADIEYSISKGGNDQIQGSAVIGAIKASFEN >UniRef50_Q8IKK4(240-327:344) Replication factor C3 n=7 Tax=Plasmodium RepID=Q8IKK4_PLAF7 E=9e-10 s/c=0.73 id=24% cov=94% PLPSETKKILEYFTKGSIKESYEFVSNLQYDKGYSTKDIMMCLYESVLTYDFPD-SAFCLLLKNFGEIEERCSSGASEQITLSALISAF------ >UniRef50_B7XHK9(220-303:303) Replication factor C subunit n=1 Tax=Enterocytozoon bieneusi H348 RepID=B7XHK9_ENTBH E=4e-05 s/c=0.59 id=21% cov=89% ---DQINKICGWLLNPEI--SFKNAYMAILNEDIECETILQEIFKKILTLKL---DNKFVIIQGLSEIEYALAKGCNDKIQLSALVGLFKET--- >UniRef50_P40348(264-350:353) Replication factor C subunit 2 n=18 Tax=Dikarya RepID=RFC2_YEAST E=1e-10 s/c=0.78 id=12% cov=88% --PHDILiEIVEKVKSGDFDEIKKYVNTFM-KSGWSAASVVNQLHEYYITNDNFDTNFKNQISWLLFTTDSRLNNGTNEHIQLLNLL--------- >UniRef50_Q2NH89(225-320:321) Replication factor C small subunit n=3 Tax=Archaea RepID=RFCS_METST E=2e-15 s/c=0.87 id=22% cov=94% --PKDVRKIINKALNHDFMEARDLLRDIMIIEGVSGDDLITQFYQEVAQMtqeELIPEVEFIKLMEYMSECDYRIREGSNPRLQLEALLSKFL----- >UniRef50_Q4FYR7(261-357:360) Replication factor C, subunit 4, putative n=7 Tax=Trypanosomatidae RepID=Q4FYR7_LEIMA E=2e-12 s/c=0.76 id=21% cov=100% PHPLLVENVITACVTKrNIEEAHREMNRLL-NRGYAPVDVIATFFKVAQTHArlFRSELQQLEVLKIVGETTMRIAEGVGTPLQLAAMLARMIAALEN >UniRef50_A2E057(236-324:325) ATPase, AAA family protein n=2 Tax=Trichomonas vaginalis RepID=A2E057_TRIVA E=1e-09 s/c=0.72 id=23% cov=95% --PSDVENYFHTCLSADWDTIENATTDLVYA-GYDISQIFEILISLIVKSNEIPEAKKPQLILKIAQADGSIINRADPQFQLLGISASIRAS--- >UniRef50_D2RTA9(247-330:334) Replication factor C n=3 Tax=Halobacteriaceae RepID=D2RTA9_9EURY E=4e-08 s/c=0.70 id=21% cov=89% ---DEIEGMLDDAEAGEFTDARKTLDDLLVDEGLDGGEVLDSILGVARKRYQGELLARIHQLA--ADIEFEMQEGSSDRIHVSHLLAEL------ >UniRef50_B4R6P6(121-199:208) GD15662 n=2 Tax=melanogaster subgroup RepID=B4R6P6_DROSI E=2e-07 s/c=0.72 id=15% cov=55% ----------------------------------SVGQMMEQFVEFIVHHPGLNDPQKATICDKLGECCFRLQDGGSEYLQIMDL---------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * P 1 * * * * * * * * * * * * 0 * * * * * * * 1 0 * * * * * * 5782 0 0 R 2 4536 * 5133 5127 * * 2646 * * 2815 * 5485 4409 3842 2514 2747 3086 * * 5887 2 0 * * * * * * 6080 0 0 P 3 * * 4783 * * * * * 4828 * * * 240 * 5059 5278 5267 * * * 3 0 * * * * * * 6289 0 0 S 4 2966 * 2811 2050 * 5598 5019 6542 4226 4650 5726 * * * * 2075 3711 * * * 4 0 * * * * * * 6474 0 0 D 5 * * 1286 2048 * 5893 * 4318 5489 3686 * * * 3730 4451 5270 5415 6557 * * 5 0 * * * * * * 6495 0 0 L 6 * * * * 5436 * * 879 * 4217 4415 * * * * * 4458 1801 * * 6 0 * * * * * * 6714 0 0 K 7 5219 * 3018 2588 * * * * 2283 4036 * 4367 * 3556 3355 3489 3967 4937 * * 7 55 4740 * 0 * * * 6778 1661 0 A 8 3956 * 4172 1905 6017 5485 * 6402 2343 * 5899 3175 * 3559 4792 4852 4996 5637 * 4970 8 0 * * * * * * 6778 0 0 V 9 5662 * * * 6085 * * 1176 * 2223 2666 * * * * * 5933 3164 * 5423 9 0 * * * * * * 6778 0 0 L 10 5332 5439 * 5732 3076 * 5549 2242 * 1757 4079 * * * * * 4658 2549 5922 * 10 0 * * * * * * 6799 0 0 K 11 5732 * 2707 2302 * 3950 3876 * 3128 4672 * 3855 * 4390 5157 3341 3392 * * * 11 0 * * * * * * 6799 0 0 S 12 2906 * 3976 5752 4477 5656 3715 4968 4636 2900 * * * 5943 3803 4344 3221 3831 3487 4891 12 0 * * * * * * 6799 0 0 I 13 1940 2525 * * 4629 * * 4344 * 1493 3620 * * * * 6051 * 5365 * * 13 0 * * * * * * 6799 0 0 L 14 5485 5732 * 5524 * * * 3327 3241 941 4456 * * * 5632 4922 4514 4218 6084 * 14 18 6363 * 0 * * * 6799 1000 0 E 15 3557 5417 5135 3647 * 5656 * * 3603 * 5223 1440 * 4246 5169 2768 4600 5842 * * 15 70 4401 * 0 * * * 6799 2105 0 D 16 4104 * 3984 3581 * 1825 4744 * 2740 * * 4836 5439 3761 6002 2486 * * * * 16 25 5839 * 0 * * * 6799 1000 0 D 17 * * 1487 2822 * 5632 * * 4317 5365 * 2722 3167 * * 3124 5075 * * * 17 0 * * * * * * 6799 0 0 W 18 6102 * * 5677 1400 * * 2369 * 3081 * * * * * 6196 * 3535 3609 3421 18 34 * 5439 * * * * 6799 0 0 G 19 4782 5708 2663 3844 4748 4820 * 6670 2437 4187 5952 5627 6009 4728 5047 3140 3303 4048 * * 19 0 * * * * * 0 6752 0 1000 T 20 3394 * 3726 1744 * 5607 * 4854 2755 * * 5198 6877 * 4833 3804 2776 4680 * * 20 25 * 5870 * * 0 * 6752 0 1000 A 21 864 3101 * * * 3974 * 4384 * 4501 * * * * * 3143 4735 5188 * * 21 0 * * * * 0 * 6785 0 1000 H 22 * 4733 5610 4330 2927 * 3754 4666 5365 3353 3977 * * 6028 1966 * * 4674 5424 2967 22 0 * * * * * * 6799 0 0 Y 23 5332 * 2914 2410 * * 6340 5656 2171 5904 5732 2680 * 5365 3810 5092 4468 5424 * 6040 23 0 * * * * * * 6799 0 0 T 24 3910 * 5417 4446 5877 * 4642 2902 2414 3422 6002 4454 * 4496 4354 5656 2814 4742 * 4695 24 0 * * * * * * 6799 0 0 L 25 3803 * * * 4323 * * 1996 * 1564 3637 * * * * * 5445 2426 * * 25 0 * * * * * * 6799 0 0 N 26 4554 * 2713 3932 * * 5434 5008 4544 * 6340 2275 * 3555 3567 4101 3362 5019 * 3891 26 0 * * * * * * 6799 0 0 K 27 4750 * 2483 2218 * 5632 4881 * 3228 * 5439 3779 * 4635 4378 3954 2649 * * * 27 37 * 5306 * * * * 6799 0 0 V 28 5401 * * * 4282 * * 1948 6178 1008 5311 * * 5914 * 4167 5897 4626 * * 28 123 * 3618 * * 0 * 6742 0 1000 R 29 * 5523 * * * * * 3293 2294 2071 2749 5966 * 4231 4726 * * 3116 3983 * 29 80 * 4206 * * 0 * 6640 0 2898 S 30 6358 5580 5414 3610 4474 5731 5698 2234 4231 4469 6071 4450 * 4157 * 3548 3120 3532 * 3969 30 32 * 5527 * * 0 * 6757 0 2250 A 31 3484 * 2873 1942 * * * 5995 3224 3030 * 3474 * 4704 6133 * 3848 4141 * * 31 113 5774 4135 1000 1000 0 * 6861 1000 1000 K 32 5730 * 3761 2166 * * 5801 * 2045 * * 3701 * 2934 4431 4493 4900 * 5684 3781 32 81 * 4191 * * 0 * 6788 0 2002 G 33 * * 5377 * * 139 * * * * * 5603 * 5346 * 5465 * * * * 33 0 * * * * 623 1511 6839 0 2208 L 34 * * * * 2946 * 4581 3719 * 1747 3716 * * * * * * 4597 4221 1818 34 0 * * * * 0 * 6897 0 1000 A 35 1865 5456 3319 5594 * * * 6052 * * * 4559 * * * 1071 4369 * * * 35 0 * * * * * * 6673 0 0 L 36 3432 5594 * 4985 * 2192 * 4356 * 1819 4106 * 3437 * * * 5167 3279 * 5456 36 0 * * * * * * 6673 0 0 I 37 2307 * 4738 2816 4329 3678 6741 4968 4465 3854 * 5718 * 2904 4903 4297 4773 4026 * * 37 0 * * * * * * 6673 0 0 D 38 * * 637 3273 * * * * * 4568 * 5632 * 3010 * 5480 5594 * * 5389 38 16 * 6487 * * * * 6673 0 0 L 39 * * * * 4187 * * 1180 * 1985 4703 * * * * * * 2355 5862 * 39 0 * * * * * 0 6671 0 1000 I 40 5223 * * * 3812 * * 2030 * 1466 4589 * * * * * 4741 2209 * * 40 0 * * * * * 0 6671 0 1000 E 41 5753 * 4298 3476 * 4201 6178 3550 3071 4012 6130 3639 5340 4581 3021 4258 2672 6268 * * 41 0 * * * * * 0 6671 0 1000 G 42 3528 4684 * 2759 * 4056 5504 4819 * 4843 * 5092 4524 2234 4936 2794 3632 * * 4997 42 0 * * * * 0 * 6671 0 1000 I 43 * * * * 3001 * * 2142 * 1030 4516 * * * * 5226 5953 3791 * * 43 29 6578 6780 2322 322 * * 6675 1000 0 V 44 5196 * * 6013 2736 5582 1921 4572 * 3727 * 3927 * 5263 6184 3556 4946 3263 * 3692 44 0 * * * * * 0 6682 0 1000 K 45 6047 * 3279 2344 * 5432 5978 * 3729 6719 * 3887 3962 4337 2351 2989 5362 * * 4902 45 12 * 6882 * * 0 * 6682 0 1000 I 46 3125 * * 3524 3862 * 5693 5365 3944 3795 * * * 3978 4501 3886 6330 1866 * 3524 46 0 * * * * 0 * 6688 0 1000 L 47 3261 5759 6642 * 5400 * * 1962 * 2008 4476 * * * * 6229 5938 2106 * 4990 47 0 * * * * * * 6675 0 0 E 48 5324 * 6524 4570 3075 * 5724 3289 3749 3202 4423 4893 6867 4192 3524 4634 * 2278 6338 6666 48 0 * * * * * * 6675 0 0 D 49 4860 * 4831 3089 * 6098 5128 * 3900 5134 4689 2900 * 4455 2905 4262 2282 4772 6049 6265 49 83 5737 4741 1585 585 * * 6675 1000 0 Y 50 4203 4589 5177 * 4921 * 4348 3930 6126 2468 3005 3590 * * 5339 3403 5824 4087 * 2939 50 89 4058 * 896 1112 926 1078 6611 2265 1605 E 51 5764 * 1604 2520 * * 4961 * 3591 * * 3845 4325 4437 * 3085 4884 5495 * 5403 51 96 5759 4453 1000 1000 * 0 6650 1000 1000 L 52 * 5933 4697 3677 3435 4344 * 3401 5998 2449 2831 4462 * 5349 * * 4562 3056 4483 6149 52 375 6678 2190 3459 138 * 0 6563 1000 2423 Q 53 * * * * 5166 4000 * 3187 3954 2750 * * 1580 5851 2873 * * 4832 * 3980 53 324 4296 2736 1583 586 643 1475 6303 2138 4716 N 54 3548 * 1810 4411 * 5062 * * * * * 2694 3086 5181 * 2428 5058 4768 * * 54 117 4436 4984 2120 377 372 2138 6411 1660 4758 E 55 3662 * 2946 1377 * * 6002 * 4948 5364 * * 3605 3784 * 3482 4307 4676 * * 55 123 * 3608 * * 748 1306 6602 0 2728 E 56 2729 * 3425 3613 * 4501 * * 3070 3084 * 3384 4928 6266 5110 3332 5635 4382 * 4179 56 19 * 6266 * * 472 1841 6884 0 3424 T 57 3058 4853 * 4412 5466 * 6413 4297 3554 3733 4908 3304 * 3131 6668 6353 3145 2566 * * 57 36 * 5359 * * 0 * 6668 0 2065 R 58 * * 5921 * 4821 * * 5384 1237 4035 * * 6150 4463 2033 4317 6314 3785 * * 58 0 * * * * 0 * 6681 0 1554 V 59 2528 3722 * 5911 5602 4629 * 1881 * 3481 5062 3913 4334 * * 4037 * 3446 * 6200 59 52 * 4825 * * * * 6676 0 0 H 60 6619 * 5266 1925 4284 4910 4183 5442 3889 4270 * 4297 6522 3131 3620 * 3837 4531 * 4378 60 0 * * * * 0 * 6561 0 1777 L 61 5566 5736 * * 3404 * * 1868 * 1249 5911 * * 5432 * * * 3561 4429 * 61 0 * * * * * * 6676 0 0 L 62 3419 5233 * * 5116 * 5299 2346 * 1230 3842 * * * * 5478 5473 3506 * * 62 0 * * * * * * 6676 0 0 T 63 5432 5566 3187 2433 * * * 4456 2435 3491 4433 5348 * 4789 3848 3964 4383 6409 5478 5736 63 34 * 5432 * * * * 6676 0 0 K 64 3426 * 4440 3810 * 3407 * 3402 2252 3765 * 5150 * 5034 2672 * 4116 5164 * 5964 64 0 * * * * * 0 6608 0 1000 L 65 5240 * * * 4719 5147 * 2239 * 1013 3135 * * * * * * 3538 * * 65 0 * * * * 0 * 6608 0 1000 A 66 1160 5978 * * 4735 1912 * * * * * 5455 * * * 2249 * * * * 66 0 * * * * * * 6676 0 0 D 67 5299 * 1422 1544 * * * * 4997 3998 4561 * * 4426 5399 * 4907 * * 5735 67 0 * * * * * * 6676 0 0 I 68 3079 3907 * * 6160 * 5399 1629 * 4180 * * * * * * 2278 2826 * 4278 68 0 * * * * * * 6676 0 0 E 69 * 4227 1699 1002 * * 4834 * 5455 * * 4885 * 6167 6005 * 5770 * * * 69 0 * * * * * * 6676 0 0 Y 70 3887 5698 * 3904 3110 5704 5040 5455 4336 4459 4297 4618 * 5116 3694 5478 * * 4993 1682 70 0 * * * * * * 6676 0 0 S 71 4667 4095 5299 5432 * * * * 4883 * 5566 3550 * * 742 3940 5222 * * 5412 71 0 * * * * * * 6676 0 0 I 72 5412 5167 * * * * * 2095 6550 847 3349 * * * * * * 4319 * * 72 0 * * * * * * 6676 0 0 S 73 1728 * * * * * 4768 3396 * 4467 * 4138 * 4766 5977 1841 4366 3571 * * 73 0 * * * * * * 6676 0 0 K 74 4357 6058 3353 1980 4634 4366 5929 4504 4172 4862 * 3918 * 5639 5193 3085 4681 4239 * 5476 74 0 * * * * * * 6676 0 0 G 75 4827 6095 * * * 172 * * * * * * * * 5704 5566 * 5476 * * 75 0 * * * * * * 6676 0 0 G 76 1715 2845 * * * 2337 * * * 3618 * * * * * 2862 3496 4302 * * 76 0 * * * * * * 6676 0 0 N 77 5222 * 3200 5299 * 4502 5476 * * * * 1629 6446 6005 4433 1726 3767 * * * 77 0 * * * * * * 6676 0 0 D 78 * * 2819 857 * * * * 5399 * * 5511 3324 * * 2987 4853 * * * 78 0 * * * * * * 6676 0 0 Q 79 5874 * * 3672 5878 5349 4057 * 2613 5735 5070 * 5770 3351 2051 4426 5515 5222 * 2858 79 0 * * * * * * 6676 0 0 I 80 5412 * * * 5704 * * 1226 * 1593 6379 5731 * * * * 4619 2980 * * 80 0 * * * * * * 6676 0 0 Q 81 5349 * * * * * 3640 * * * * * * 271 * * 4542 5412 * * 81 0 * * * * * * 6676 0 0 G 82 * * * * 5014 5342 * 4755 * 513 4771 * * * * 5233 3851 3754 * * 82 0 * * * * * * 6580 0 0 S 83 2672 * 4080 2995 * 3408 5745 6371 5698 2887 3506 5908 * 5837 * 2367 4359 * * 6130 83 0 * * * * * * 6531 0 0 A 84 1106 * 4088 * * 2578 4305 * 5400 * * 4102 * * 5065 3127 * * * 4950 84 0 * * * * * * 6536 0 0 V 85 * * * * 3506 * * 3573 * 725 2699 * * * * * * 4289 5820 * 85 0 * * * * * * 6536 0 0 I 86 4572 4467 * * * 5585 * 2339 * 1416 * * * * * 5405 * 1757 * * 86 0 * * * * * * 6414 0 0 G 87 984 * * * * 2275 * * * * * * * * * 2108 4880 * 5508 * 87 0 * * * * * * 6189 0 0 A 88 1585 5753 * 3865 * * * 4049 3993 5189 * * * 5016 3046 2536 3776 4986 * * 88 0 * * * * * * 6050 0 0 I 89 * * * * 1156 * * 2526 * 2633 3721 * * * * * * 2831 * * 89 0 * * * * * * 5938 0 0 K 90 2957 * * * * * 4202 3870 2242 4133 * * * 1791 2838 * * 4284 * * 90 0 * * * * * * 5124 0 0 A 91 1000 * * 2288 * * * * * * * 2965 * * * * 3513 3651 * * 91 0 * * * * * * 4317 0 0 S 92 1785 * * * * * * 2844 * * * * * * * 2037 1613 * * * 92 0 * * * * * * 3920 0 0 F 93 * * * * 794 * * * * 2501 * * * * 2020 * * * * * 93 0 * * * * * * 3228 0 0 E 94 2185 * 2556 713 * * * * * * * * * * * * * * * * 94 0 * * * * * * 3228 0 0 N 95 * * * * * * * * * * * 0 * * * * * * * * 95 0 * * 0 * * * 2450 0 0 //