HHsearch 1.5 NAME d1sxda_ FAM FILE d1sxda_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1sxda_.a3m DATE Mon Mar 8 16:05:37 2010 LENG 91 match states, 91 columns in multiple alignment FILT 100 out of 106 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.1 EVD 0.4498 1.1801 SEQ >ss_dssp CCCHHHHHHHHHHHTTTTCCSSGGGCCHHHHHHHHHHHHHHTTCCCSCSGGGCSCHHHHHHSCHHHHHHHCTTCHHHHHHHHHHHHTTTCC >sa_dssp EEEDEBAEBADDCAEEEEBCBBADDBDCECABDAAEBAADDCEBEEBDDEDAECDAECACDBEDEDACEDADDAEDABDABEBADEDDEDE >ss_pred CCHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHC >ss_conf 9236888538999996188879665899999999999999929899997676978899983299999995878768999999999997509 >Consensus xxxxxxxxxxxkexxrlxipxDPxxWsxxxVxxWLxwaxxefxLxxixxxxFxmxGkxLCxlsxxdFxxrxPxGdiLxxhLxxLkxxxxxx >d1sxda_ GSHMAALEGYRKEQERLGIPYDPIHWSTDQVLHWVVWVMKEFSMTDIDLTTLNISGRELCSLNQEDFFQRVPRGEILWSHLELLRKYVLAS >UniRef50_C4QKE3(5-66:702) Gabp alpha, putative n=1 Tax=Schistosoma mansoni RepID=C4QKE3_SCHMA E=3e-07 s/c=0.91 id=29% cov=65% ------------------------------VIMWINWACKQFRIEGLKGEKlFNMPGSRMFVLTPDDWRRLVPNANVnFLTHLELLKRCV--- >UniRef50_UPI0001923DE7(219-291:293) PREDICTED: hypothetical protein, partial n=1 Tax=Hydra magnipapillata RepID=UPI0001923DE7 E=2e-11 s/c=0.96 id=23% cov=77% ----------------LKLPIDPKSWNVNDVRKYFEWLVSVLGTERplIDYPQFVFDGKLLFKMRKRNLQPLFPESavDLIWMHIEALK------ >UniRef50_UPI00016E3952(55-121:292) UPI00016E3952 related cluster n=4 Tax=Takifugu rubripes RepID=UPI00016E3952 E=1e-08 s/c=0.90 id=28% cov=70% ----------------------PQYWTVDNVLEWISDHVesNKFDAHSLSLALCSMDGYSLCQMAQDQMIEAF--GSQLGSHLyHSLQEH---- >UniRef50_UPI0000E48AB6(7-74:591) PREDICTED: similar to B-cell linker n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E48AB6 E=2e-08 s/c=0.88 id=26% cov=68% -----------------------REWSVDDVANWLR--QEKFASYAANFLRYRIDGIALCDLQKDRFdtLTRSSMGrddraSMLWKNINIIKR----- >UniRef50_Q16SU2(104-180:803) Ets n=3 Tax=Culicini RepID=Q16SU2_AEDAE E=2e-17 s/c=1.17 id=28% cov=74% ---------------------DPRIWGREEVAVFLRFCEREFDLPKFDLDLFQMNGKALCVLTKNDLAERSPgAGDVLHNVLQMLVRD---- >UniRef50_Q4H3K3(208-284:572) Transcription factor protein n=1 Tax=Ciona intestinalis RepID=Q4H3K3_CIOIN E=2e-14 s/c=1.05 id=27% cov=81% -----------KELE-VFVPSELSSWTNSHVVQWLTWVVHEYKLQKVDCSRFKgITGIDLSKMTVKDFKNLTSTekdADVFFSHLQYLK------ >UniRef50_A8PJ66(68-145:345) Ets-domain containing protein n=1 Tax=Brugia malayi RepID=A8PJ66_BRUMA E=2e-09 s/c=0.82 id=26% cov=80% ------------------LSKEPQEWTMGDVIAWLLHVARQNGIPfeDLEMQKFaNCTGMMLIQMREIDFKQRdAVYGSLLYAEFRkLLIEERLA- >UniRef50_B7P7R0(10-72:262) Epithelium specific ets factor 3, ese3, putative (Fragment) n=1 Tax=Ixodes scapularis RepID=B7P7R0_IXOSC E=2e-06 s/c=0.85 id=27% cov=65% ------------------------HWQSCDVLTWlLSWLGhNQIELAEEEIDVFsNMAGDHLCRLSPEEFRNIAPSyGHMLYEEVQ--------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 1533 0 0 S 2 * * * * * 1000 * * * * * * * * * 1000 * * * * 2 0 * * * * * * 1533 0 0 H 3 * * * * * * 1000 * * * * * * * * 1000 * * * * 3 0 * * * * * * 1533 0 0 M 4 * * * * * * * * * 1000 1000 * * * * * * * * * 4 0 * * * * * * 1533 0 0 A 5 253 * * * * * * * * * * * * * * 2638 * * * * 5 0 * * * * * * 2545 0 0 A 6 3662 * * * * * * * * * * * * * * 543 2601 3842 * * 6 0 * * * * * * 2948 0 0 L 7 * 3842 * * 536 * * * * 2423 * * * * * * * * * 4212 7 0 * * * * * * 2948 0 0 E 8 1811 * * 4182 * * * * 4461 * * * * 3199 * 984 * * * * 8 0 * * * * * * 3326 0 0 G 9 4596 * * * * 2219 * * 3392 * * 3027 * * 3975 1113 * * * * 9 0 * * * * * * 3402 0 0 Y 10 * * * * 607 * * * * 4199 * * * * * * * * 2662 2933 10 91 4028 * 2000 415 * * 3532 1000 0 R 11 3506 * 4401 2265 * * * * 1714 * * 4922 * 4801 2410 3862 5264 * * * 11 0 * * * * * * 3907 0 0 K 12 * * 3835 3798 * * 5051 * 857 * * 4404 * 4381 2852 * 4576 * * * 12 0 * * * * * * 3981 0 0 E 13 * * 2510 784 * * * 4431 * 4400 * * * * * 4235 * 3369 * * 13 0 * * * * * * 4024 0 0 Q 14 * * 4170 2315 * * * * * 3306 4619 4204 * 1425 2993 * * 4337 * * 14 48 * 4938 * * * * 4043 0 0 E 15 * * 4297 1659 * 4651 5373 3578 2906 4634 * * * 2888 2941 * * 4444 * * 15 53 * 4782 * * * 0 4163 0 1000 R 16 4935 * * * * 4912 * 3536 2756 4873 4121 * 5033 5371 950 4791 * * * * 16 49 4897 * 0 * 956 1045 4399 1000 1615 L 17 * 4107 * * * * 5206 * 6077 661 * 5447 * * * 4340 * 2357 * * 17 0 * * * * 0 * 4871 0 1000 G 18 * * * 5189 4043 1908 5253 3187 3121 5645 * 2529 * 4591 3785 4709 5239 5469 * * 18 0 * * * * * * 4982 0 0 I 19 * * * * 5572 * * 1171 * 1861 5838 * 5666 * * * * 2169 * * 19 56 * 4719 * * * * 5084 0 0 P 20 5081 * * * * * 5364 5518 * 6327 * * 576 * 5558 2798 3719 * * * 20 0 * * * * * 0 5228 0 1354 Y 21 2600 * 4910 5027 * 5371 6434 4484 1958 4525 * 4304 3503 4976 5071 3396 4956 4433 * 5961 21 0 * * * * 0 * 5314 0 1354 D 22 5280 * 313 3972 * * * * * * * 3504 * 5830 * * * * * * 22 0 * * * * * * 5424 0 0 P 23 6456 * * * 5665 * * * * 4609 * * 145 * * * * 5418 * * 23 0 * * * * * * 5797 0 0 I 24 5440 * * 5168 5992 * 5394 5923 3517 3748 4006 4010 * 2767 1950 4029 3877 * 5475 4332 24 0 * * * * * * 5823 0 0 H 25 4284 5283 3469 2797 4756 6221 4477 5670 6145 2448 4829 5492 * 3185 4633 4109 5081 5258 * 4178 25 0 * * * * * * 5849 0 0 W 26 * * * * * * * * * * * * * * * * * * 0 * 26 0 * * * * * * 5849 0 0 S 27 6145 * 4801 * * 6450 * * 6453 6012 * 3864 * 6063 * 1294 1251 * * * 27 0 * * * * * * 5849 0 0 T 28 3991 6464 7033 2881 6224 * 6062 5568 2673 6447 5824 4802 3180 4535 3015 3700 4594 3256 * 6501 28 0 * * * * * * 5849 0 0 D 29 3113 5522 2680 1914 5035 5010 6951 6544 * 6145 6986 3918 6307 4353 5665 5040 3858 4913 4329 6762 29 0 * * * * * * 5849 0 0 Q 30 6712 * 1635 4795 * 5987 1678 * 6498 * * 3579 * 2255 * * * * * * 30 0 * * * * * * 5849 0 0 V 31 * * * * * 5749 * 4060 * * * * * * * 6142 6076 164 * * 31 0 * * * * * * 5816 0 0 L 32 2434 5970 * * 6016 6195 4925 4152 3166 2857 5381 5051 * 3927 2818 6004 5740 4301 3917 5771 32 0 * * * * * * 5816 0 0 H 33 3015 * 4988 3096 * 6555 3461 6848 3775 5418 5441 6064 * 2368 4037 4154 3651 5871 6016 4051 33 0 * * * * * * 5816 0 0 W 34 * * * * 4269 * * * * * * * * * * * * * 117 5274 34 20 6153 * 0 * * * 5816 1000 0 V 35 6391 * * * 4762 * * 2661 * 808 3997 * * * * * * 2650 * * 35 51 5636 6076 0 * * * 5816 1156 0 V 36 6093 * 4409 3075 * 5369 4819 6222 4913 3315 7260 3459 * 2627 2815 3202 5471 4131 * 5425 36 21 * 6126 * * * 0 5858 0 1000 W 37 5028 6120 4342 4800 4549 * 4189 * * 4601 6496 5304 * 5022 * 6215 * * 678 5314 37 0 * * * * * 0 5831 0 1620 V 38 1374 3369 * * * * 4653 4861 * 3694 4275 * * 6020 * 4732 3679 2449 * * 38 68 4436 * 1000 1000 949 1052 5831 1960 1620 M 39 3327 3633 * 3731 * 5298 * 3057 5823 6219 3922 * * 3668 7076 3110 3770 2142 * * 39 91 4029 * 806 1224 0 * 5858 2334 1000 K 40 4118 * 4751 4209 * 5172 4210 * 2197 * 5749 2697 * 4134 2386 3677 5681 4935 * * 40 0 * * * * * * 5816 0 0 E 41 * * * 1280 * * 4998 6991 2640 5527 * * * 1946 4345 6760 7063 4598 * * 41 52 4820 * 533 1695 * * 5816 1755 0 F 42 * * * * 873 * 4880 4831 * 3498 6473 5868 * * * * * * * 1900 42 22 6076 * 2322 322 * * 5816 1000 0 S 43 5128 6288 2601 3819 6530 2809 * * 4304 * * 2954 6232 3866 4332 2067 6634 6735 * * 43 0 * * * * * * 5816 0 0 M 44 3845 6774 * * 5545 * * 3372 * 541 6531 * * * * 6064 4418 5044 * 6232 44 122 3929 6016 286 2475 * * 5816 2360 0 T 45 5380 * 4557 3062 * 4655 4190 * 4847 * 7213 4127 1804 3447 4939 3806 3991 4313 6550 6120 45 160 4913 3803 1000 1000 0 * 5842 1502 1000 D 46 3834 4256 3241 2766 6007 3104 6655 * 4400 5973 6209 4333 3367 6307 3808 2891 5172 * * 6253 46 55 4729 * 1000 1000 737 1322 5756 1563 2447 I 47 4697 * * 4864 4291 * * 1933 * 2303 4492 * 3889 * * 4798 6112 2005 * * 47 20 6187 * 0 * 0 * 5810 1000 1328 D 48 4713 * 1542 3740 * 6478 * 5766 4074 5247 6788 2432 3053 6580 7069 3774 * 5480 * * 48 16 6528 * 1000 1000 * * 5817 1000 0 L 49 3812 5186 6733 5078 2838 5984 7166 3524 4338 2273 3477 6287 3463 * * 4753 4111 4564 * 5273 49 34 5439 * 733 1327 * * 5817 1579 0 T 50 3740 6983 2895 3169 7013 4760 4513 * 5281 5653 5084 3575 4351 2933 4511 2671 4881 6733 * * 50 19 6263 * 0 * * * 5817 1000 0 T 51 5213 5495 3215 6809 5066 6197 4117 * 2994 2765 5128 3252 5179 4072 2718 5337 5336 6152 * 5352 51 23 5984 * 0 * * * 5817 1000 0 L 52 * 3818 * * 457 * * * * 4626 * * 5766 5484 5428 * * * 3620 6062 52 135 3481 * 0 * * * 5817 3105 0 N 53 5491 4187 3503 3419 * 5726 4651 6632 4510 5816 6522 2476 3156 3677 4696 3752 4707 4314 * 5135 53 39 5239 * 0 * * * 5817 1605 0 I 54 7038 5865 5670 4770 5273 * * 2358 5011 3567 1076 6643 * * * * 5376 4074 6070 * 54 32 5514 * 0 * * * 5817 1789 0 S 55 4890 6287 1780 * * 6643 * * 4940 * * 1574 5984 5428 * 3178 2896 * * * 55 0 * * * * * * 5817 0 0 G 56 6002 * * * * 23 * * * * * * * * * * * * * * 56 0 * * * * * * 5817 0 0 R 57 3972 6788 6152 4954 * * 5574 3988 1565 4943 5865 * 5040 3828 2492 4386 * 4623 * 4565 57 0 * * * * * * 5817 0 0 E 58 2221 * 3104 2160 * 4138 4577 * 5581 4951 4800 6609 * 3304 5984 5131 3297 * * * 58 0 * * * * * * 5817 0 0 L 59 * * * * 6106 * * 4285 * 232 3592 * * * * * * * * * 59 0 * * * * * * 5817 0 0 C 60 4012 515 * * 4585 * * 5274 * 3912 * 5766 * 6015 * 4974 6263 5851 * 6935 60 0 * * * * * * 5817 0 0 S 61 3022 * 4378 4337 6727 5193 * 6411 3098 2558 4816 3859 * 3518 4317 3077 4482 4684 * * 61 0 * * * * * * 5817 0 0 L 62 * 6040 * * 4416 * * * * 983 1263 * * * * * 6031 * * * 62 0 * * * * * * 5817 0 0 N 63 4758 * 3914 * * 3865 * * 6187 * * 5093 4657 4548 3926 1564 1743 * * * 63 0 * * * * * * 5817 0 0 Q 64 * * 6134 3038 * * 4065 * 1698 2868 4720 * 4671 3123 2757 * * 5703 * * 64 0 * * * * * * 5817 0 0 E 65 3531 6532 2033 1690 * 6903 * 5865 4043 * * 5304 5375 4358 4298 4313 4656 5424 * * 65 0 * * * * * * 5817 0 0 D 66 4255 5544 1159 2192 * 3555 * * 6692 * 5134 5273 * 4594 4758 4962 * * * * 66 0 * * * * * * 5817 0 0 F 67 * * * * 305 * * * * 3153 5004 * * * * * * * 5984 4991 67 23 5982 * 1000 1000 * * 5817 1000 0 F 68 5370 5057 * 3897 6517 6086 * 5282 4092 2046 3579 5436 * 3737 2749 5038 4324 3114 * * 68 0 * * * * * * 5636 0 0 Q 69 3975 6463 5115 2842 * 6348 4105 * 4293 4570 5162 5170 5130 3258 2223 3714 4868 6090 * 3940 69 12 6914 * 1000 1000 * * 5636 1000 0 R 70 3840 * * * * * * 3527 3683 2299 4902 * * * 1107 6912 5800 5051 * 6923 70 73 4339 * 1005 995 * * 5614 2389 0 V 71 1686 3779 6122 6064 3267 * * 4098 * 4640 6228 * * * * 3148 3456 2579 * * 71 189 3381 5213 738 1320 * * 5614 3159 0 P 72 5020 * * * * * * * * 6442 * 5799 530 6043 4829 2854 6474 5813 * 5076 72 560 1636 * 599 1557 * 0 5554 3942 1080 R 73 2821 * 5382 3984 * 6364 * 6630 5286 5000 5959 2610 2918 3954 5523 2816 4589 4687 * 3806 73 575 1606 * 752 1300 0 * 5519 4208 1080 G 74 3664 * 6435 * * 267 * * * * * * * * * 4507 5440 6478 * * 74 69 4417 * 1674 543 * * 5610 1700 0 E 75 5730 * 995 3080 * 4561 4517 * * * * 3409 6086 6397 6471 3178 6236 5689 * * 75 12 6882 * 0 * * * 5479 1000 0 I 76 4944 * * * * * * 1487 4687 2791 4455 * * 4495 * * 3993 1863 * * 76 25 5845 * 0 * * * 5479 1000 0 L 77 * * * * 3253 * * 4414 * 238 * * * * * * * * * * 77 0 * * * * * * 5479 0 0 W 78 5093 * * * 3726 5115 2356 5543 * 3575 6023 * * * * 6438 * * 1677 2146 78 0 * * * * * * 5513 0 0 S 79 2212 * * 2164 * 5055 5759 * 4405 * 4566 3353 * 5874 5623 2466 3425 6185 * * 79 0 * * * * * * 5493 0 0 H 80 6631 * 5559 4578 * * 836 6089 5803 4898 * 3969 * 3220 * 4798 * 3856 * 5350 80 0 * * * * * * 5462 0 0 L 81 * * * * 4544 * 5529 3739 * 284 * * * * * * * 4670 * * 81 78 4246 * 0 * * * 5462 1736 0 E 82 4215 4417 3426 1600 * * 4996 * * 6849 * 4165 * 1848 4515 5155 5005 * * * 82 33 5456 * 0 * * * 5409 1000 0 L 83 4908 * 5251 5680 4133 * 3936 2578 * 1630 4651 5343 * 5705 4395 3900 * 4681 * 3816 83 0 * * * * * * 5373 0 0 L 84 * * * * * * * 4173 * 305 4271 * * * * * * 6258 3834 * 84 0 * * * * * * 5144 0 0 R 85 * * * * * * * 4138 1303 6031 * * * 2710 1617 * * 5073 * 6158 85 0 * * * * * * 5125 0 0 K 86 5290 * * 2600 * * 4922 * 1428 * * * * 2676 2507 5494 5009 * * 5689 86 0 * * * * * * 4611 0 0 Y 87 4635 4381 2459 2094 5205 * 3101 * * * 4462 4774 * 4146 * 3537 * 4417 * 3633 87 0 * * * * * * 4309 0 0 V 88 * * * * * * * * * 2544 * * * * 2478 2260 * 1436 * 3820 88 0 * * * * * * 3911 0 0 L 89 * * * 3268 * * * * * 1760 2508 * * * 1635 * 3276 * * * 89 0 * * * * * * 3470 0 0 A 90 914 * * 3268 * * * 3436 * 3470 3584 * * * * 3327 * * * * 90 0 * * * * * * 3470 0 0 S 91 2793 * * * * * * * * * * * * * * 532 2609 * * * 91 0 * * 0 * * * 2905 0 0 //