HHsearch 1.5 NAME d1s6na_ FAM FILE d1s6na_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1s6na_.a3m DATE Mon Mar 8 18:26:45 2010 LENG 115 match states, 115 columns in multiple alignment FILT 14 out of 18 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.9 EVD 0.3931 -1.1781 SEQ >ss_dssp CCCSTTTCCSSCSCCCCEEEEEEEEECSSSCEEEEEEECSSCCCBCCCEEEESSSCTTSCCSEESSSCSCBCCTTCCSEEEEEEECCSEEEEEEEEETTE EEEEEEEESSCTTCC >sa_dssp EDCEEDCBEEEDEDBDBBDBECEBDCCEECCADABADBEBEDBDBBBBBBAACEDCCEECDACBDDEBACBDECECDDEDDBCABABECBACAABBDEED DEDCDCCBEEBEEEE >ss_pred CCCEEEEEEEEEECCCEEEEEECCCCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCCCEEEEEEECCCEEEEECCCCEEEEEECCCCCCCEEEECCCCC EEHHHHHCCCCCCCC >ss_conf 9732883224555077189986123456747999999738888656568985166777235358704841554057760799964899852999845763 010223026863469 >Consensus lxxLxlKGxTYxmCxxxfxxxkxPxdTgHgTVvmeVxyxgxxxPCkIPvxxxxxxxxxxxxGrLITxNPxvtxxxxnxxvxIExepPfGdSyIxVGxgxx xlxxxWxkxGSSIGk >d1s6na_ ISEFQLKGTTYGVCSKAFKFLGTPADTGHGTVVLELQYTGTDGPCKVPISSVASLNDLTPVGRLVTVNPFVSVATANAKVLIELEPPFGDSYIVVGRGEQ QINHHWHKSGSSIGK >UniRef50_Q04538(572-680:3415) Methyltransferase/RNA-directed RNA polymerase NS5 n=425 Tax=root RepID=POLG_POWVL E=2e-18 s/c=0.86 id=45% cov=95% LEKLKLKGTTYSMCDKAkFKWKRVPVDSGHDTVVMEVSYTGSDKPCRIPVRAVAHGVPAVNVAMLITPNPTIE---TNGGGFIEMQLPPGDNIIYVGDLS QQ----WFQKGSTIGR >UniRef50_Q91KY7(178-291:291) Envelope protein (Fragment) n=1 Tax=Spondweni virus RepID=Q91KY7_9FLAV E=6e-46 s/c=1.61 id=52% cov=100% LDKLRLKGMSYALCTGAFTFARTPSETIHGTATVELQYAGEDGPCKVPIVITSDTNSMASTGRLITANPVVTESGANSKMMVEIDPPFGDSYIIVGTGTT KITHHWHRAGSSIG- >UniRef50_P27914(289-400:1683) Serine protease/NTPase/helicase NS3 (Fragments) n=3 Tax=Flavivirus RepID=POLG_DEN2T E=5e-41 s/c=1.50 id=45% cov=98% MDKLQLKGMSYSMCTGKFKIVKEIAETQHGTIVIRVQYEGDGSPCKIPF-EIMDLEKRHVLGRLITVNPIVT--EKDSPVNIEAEPPFGDSYIIIGVEPG QLKLDWFKKGSSIGQ >UniRef50_Q7T918(580-691:3425) Polyprotein n=3 Tax=Flavivirus RepID=Q7T918_9FLAV E=4e-39 s/c=1.45 id=37% cov=98% LQGLTMKGSTYTMCKGGYSFSKTPVDSGHQTVIMKVKVSKAT-PCRIPVAVIDSMQSNINRGVVVTTNPV--AFEAATEVMIEVVPPFGESVITIGNGED RLTYQWHQEGSTIGK >UniRef50_Q91KY8(177-280:280) Envelope protein (Fragment) n=2 Tax=Aroa virus RepID=Q91KY8_9FLAV E=1e-38 s/c=1.54 id=48% cov=91% MDKMVIKGVTYAQCTGSFKMEKSPADTGHGTVVLDISYQGSEAPCKVPIVITPNLAEIEPVGRLVSAHPVVT--GKNVRTMIEVEPPYGDSYIIIGTGDG KLKQHW--------- >UniRef50_C3VP79(486-796:3435) Polyprotein n=26 Tax=Flaviviridae RepID=C3VP79_9FLAV E=1e-91 s/c=0.34 id=52% cov=98% LGNMKLKGSTYVTCAQAFTFAKRPVDTGHGTVVFQVSYAGTDAPCKIPVAVTDKPNG-EHVGRLVTAHPF--IAKQNEKAVVEVEPPFGDSYIEIGAGTT KISEAWHKPGSSIGN >UniRef50_B9TRQ0(480-795:3442) Polyprotein n=705 Tax=Flavivirus RepID=B9TRQ0_9FLAV E=1e-113 s/c=0.44 id=39% cov=98% VENLKIKGATYPVCPNTVVLTKEPVDTGHSTVVVEVKLSTFTMACRLAV-TFTDAAGTKITGRLITVNPIITA--ADEKVTIEMEPPFGESFIEIGVTAD SVKHHWNRKGSSIGD >UniRef50_Q9JAD5(456-756:3379) Polyprotein n=215 Tax=root RepID=Q9JAD5_9FLAV E=3e-98 s/c=0.45 id=43% cov=96% TLNLRMKGLTYQMCSSSFVWHKRPVATQHGTVAMEVKYKGSDAPCRIPVSVEKEGYNGKNFGNLITANPF--AANNEAVVFLELEAPLGVSTIKVGGAVF Q----WKQEGSSIGK # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * I 1 * * * * * * * 3993 * 1234 1547 * * * * * 3568 3547 * * 1 0 * * * * * * 2889 0 0 S 2 * * 1818 1511 * 3845 * * * 3568 * * * 3564 * 2976 * * * * 2 0 * * * * * * 2889 0 0 E 3 2847 * * 3993 * 3564 * * 1077 * * 2062 * * * * * * * * 3 0 * * * * * * 2889 0 0 F 4 * * * * 3993 * * * * 331 2817 * * * * * * * * * 4 0 * * * * * * 2889 0 0 Q 5 * * * * * * * * 1250 * * * * 2874 2677 * 2221 3789 * * 5 0 * * * * * * 2889 0 0 L 6 * * * * * * * 2104 * 913 2081 * * * * * * * * * 6 0 * * * * * * 2889 0 0 K 7 * * * * * * * * 0 * * * * * * * * * * * 7 0 * * * * * * 2889 0 0 G 8 * * * * * 0 * * * * * * * * * * * * * * 8 0 * * * * * * 2889 0 0 T 9 3547 * * * * * * * * 2142 2243 * * * * 2698 1999 3789 * * 9 0 * * * * * * 2889 0 0 T 10 * * * * * * * * * * * * * * * 1513 622 * * * 10 0 * * * * * * 2889 0 0 Y 11 * * * * 3742 * * * * * * * * * * * * * * 112 11 0 * * * * * * 2889 0 0 G 12 2792 * * * * 3073 * * 3959 * * * 3547 3568 * 2829 2718 2252 * * 12 0 * * * * * * 2889 0 0 V 13 * * * * * * * * * 3796 1013 * * 3789 * * 2793 2212 * * 13 0 * * * * * * 2889 0 0 C 14 * 0 * * * * * * * * * * * * * * * * * * 14 0 * * * * * * 2889 0 0 S 15 3845 * 2893 * * 3742 * * 3564 * * * 3547 * * 2765 1308 * * * 15 0 * * * * * * 2889 0 0 K 16 * * 3959 4159 * 1175 * * 2341 * * 3547 * 3845 * 3568 * * * * 16 0 * * * * * * 2889 0 0 A 17 1881 * * * * 3564 * * 2367 * * * * * * 2170 2135 * * * 17 209 2893 * 0 * * * 2889 1117 0 F 18 * * * * 385 * * * * * 3959 * * * * * * 3547 * 3564 18 0 * * * * * * 2889 0 0 K 19 * * * * * * * * 1550 * * * * * * 2161 1916 2558 * * 19 0 * * * * * * 2889 0 0 F 20 * * * * 1047 * * 3764 * 2726 3789 * * * * * * * 2192 * 20 0 * * * * * * 2889 0 0 L 21 2820 * * 2858 * * 3568 * 2893 3993 * * * * * 2216 3547 2858 * * 21 0 * * * * * * 2889 0 0 G 22 * * * * * 3993 * * 453 * * * * * 2275 * * * * * 22 0 * * * * * * 2889 0 0 T 23 3890 * * 2153 * * * * * * * 3055 * 3742 2700 3789 2189 3897 * * 23 0 * * * * * * 2889 0 0 P 24 * * * * * * * 3764 * * * * 216 * * * * 3930 * * 24 0 * * * * * * 2889 0 0 A 25 1598 * * * * * * * * * * * * * * 2769 2924 1354 * * 25 0 * * * * * * 2889 0 0 D 26 3568 * 505 2243 * * * * * * * * * * * * * * * * 26 0 * * * * * * 2889 0 0 T 27 * * * * * * * * * * * * * * * 2190 357 * * * 27 0 * * * * * * 2889 0 0 G 28 * * * * * 505 * 3796 * * * * * 2161 * * * * * * 28 0 * * * * * * 2889 0 0 H 29 * * * * * * 0 * * * * * * * * * * * * * 29 0 * * * * * * 2889 0 0 G 30 * * 2893 * * 524 * * * * * * * 3564 * 3547 * * * * 30 0 * * * * * * 2889 0 0 T 31 * * * * * * * * * * * * * * * * 0 * * * 31 0 * * * * * * 2889 0 0 V 32 3796 * * * * * * 3764 * * * * * * * * * 227 * * 32 0 * * * * * * 2889 0 0 V 33 3568 * * * * * * 2651 * 3930 * * * * * * 3796 692 * * 33 0 * * * * * * 2889 0 0 L 34 * * * * 3845 * * 3764 * 2387 1176 * * * * * * 2164 * * 34 0 * * * * * * 2889 0 0 E 35 * * 3789 811 * * * * 3564 * * * * 2325 3764 * * * * * 35 0 * * * * * * 2889 0 0 L 36 * * * * * * * 3789 * 2390 * * * * * * * 441 * * 36 0 * * * * * * 2889 0 0 Q 37 * * * * * 3890 * * 1380 * * * * 1919 * 2258 3742 * * * 37 0 * * * * * * 2889 0 0 Y 38 * * * * 3890 * * * * 3547 * * * * * * 3742 2748 * 682 38 96 * 3959 * * * * 2889 0 0 T 39 2737 * * 2746 * * * * 3495 * * * * 3722 * 1961 1838 * * * 39 0 * * * * 0 * 2865 0 1000 G 40 * * * * * 533 * * 3564 * * * 3959 * * * 2641 * * * 40 0 * * * * * * 2889 0 0 T 41 3564 * 3764 3796 3547 * * * 3959 * * * * * * 1496 1913 * * * 41 0 * * * * * * 2889 0 0 D 42 * * 1066 3789 * 2858 * * * * * * * * 3890 3742 2556 * * * 42 238 * 2718 * * * * 2889 0 0 G 43 1290 * * * * 2204 * * 3266 * 3329 * * * * 3600 * 3508 * * 43 0 * * * * 0 * 2756 0 1462 P 44 3547 * * * * * * * * * * * 129 * * * * * * * 44 0 * * * * * * 2889 0 0 C 45 * 0 * * * * * * * * * * * * * * * * * * 45 0 * * * * * * 2889 0 0 K 46 * * * * * * * * 899 * * * * * 1109 * * * * * 46 0 * * * * * * 2889 0 0 V 47 * * * * * * * 661 * 2641 * * * * * * * 2271 * * 47 112 * 3742 * * * * 2889 0 0 P 48 3356 * * * * * * * * * * * 148 * * * * * * * 48 0 * * * * 0 * 2833 0 1000 I 49 * * * * 2844 * * 1926 * 3742 * * * * * * * 935 * * 49 250 * 2652 * * * * 2889 0 0 S 50 2480 * * * * * * 3681 * * 3428 * * * 2676 1631 * 2551 * * 50 0 * * * * 0 * 2739 0 1490 S 51 2893 * * 3764 * 3742 * 2792 * * * * * * * 3073 2726 1724 * * 51 0 * * * * * * 2889 0 0 V 52 3959 * * 3568 2641 * * 2661 * * * * * 3930 * * 2225 1981 * * 52 0 * * * * * * 2889 0 0 A 53 1981 * 1816 3742 * * * * 3568 * 3764 * 3789 * * 3796 3547 * * * 53 0 * * * * * * 2889 0 0 S 54 * * 1434 2738 * * 2893 * 3845 * * 3789 * * * 2298 * * * * 54 98 * 3930 * * * * 2889 0 0 L 55 2561 * * * * 2105 * * * 1480 3501 * 3755 * * * 3697 * * * 55 0 * * * * * 0 2867 0 1000 N 56 2570 * * 3547 * * * * * * * 1848 * 3501 * 3667 3863 2821 * 3457 56 0 * * * * 0 * 2867 0 1000 D 57 3959 * 3073 3789 * 2121 * * 2844 * * 3568 2893 * * 2675 * * * * 57 104 * 3845 * * * * 2889 0 0 L 58 2842 * * 3818 * 2645 * 3620 3627 3874 2831 3469 * * 3689 * 3459 * * * 58 0 * * * * 0 * 2850 0 1000 T 59 3796 * * 2817 * * 3764 3564 2558 * * * * * * * 2369 1919 * * 59 0 * * * * * * 2889 0 0 P 60 * * * * * * 3845 2641 * * * 1443 2387 * * 3796 3930 3764 * * 60 0 * * * * * * 2889 0 0 V 61 * * * * 3568 * * * 2847 3764 * * * 3930 3564 * 2666 1339 * * 61 0 * * * * * * 2889 0 0 G 62 2893 * * * * 322 * * * * * 3930 * * * * * * * * 62 0 * * * * * * 2889 0 0 R 63 * * * * * * * 3959 * * 2893 3568 * * 661 * * 3564 * * 63 0 * * * * * * 2889 0 0 L 64 * * * * * * * * * 218 4159 * * * * * * 3564 * * 64 0 * * * * * * 2889 0 0 V 65 * * * * * * * 760 * * * * * * * * * 1288 * * 65 0 * * * * * * 2889 0 0 T 66 * * * * * * * * * * * * * * * 3789 108 * * * 66 0 * * * * * * 2889 0 0 V 67 1252 * * * * * * * * * * * 2893 * * * 3564 1470 * * 67 0 * * * * * * 2889 0 0 N 68 * * * * * * 2817 * * * * 221 * * * * * * * * 68 0 * * * * * * 2889 0 0 P 69 * * * * * * * * * * * * 0 * * * * * * * 69 0 * * * * * * 2889 0 0 F 70 * * * * 2206 * * 1459 * * * * * * * * 2893 2127 * 4159 70 684 * 1406 * * * * 2889 0 0 V 71 * * * * * * * 2029 * * 3176 * * * * * * 634 * * 71 169 * 3176 * * * 0 2568 0 2184 S 72 3322 * * 2750 * * * * * * * * * * * 3184 641 * * * 72 1023 * 978 * * 280 2504 2492 0 2350 V 73 1054 * * 3105 * * * 3224 * * * * * * * 3495 * 2277 * * 73 196 * 2975 * * * 0 2547 0 2128 A 74 1405 * * * 2821 * * 2902 * * * * * * * 1527 * * * * 74 0 * * * * 608 1541 2413 0 2342 T 75 * * 3728 1814 * 2630 * * 3654 * * 3361 * * * * 1728 * * * 75 0 * * * * 0 * 2768 0 1508 A 76 1199 * * * * * * * 2241 * * 2210 * 3845 * * 3897 * * * 76 0 * * * * * * 2889 0 0 N 77 3564 * 2162 2738 * * * * * * * 883 * * * * * * * * 77 0 * * * * * * 2889 0 0 A 78 2300 * 3959 2688 * 2893 * * 3930 * * * * * * 2780 2651 3789 * * 78 0 * * * * * * 2889 0 0 K 79 * * * 2748 * 2256 * * 1531 * * * 2844 * 3789 * * 3568 * * 79 0 * * * * * * 2889 0 0 V 80 3845 * * * * 2893 * * * * 3796 * * * * * 3789 618 * * 80 0 * * * * * * 2889 0 0 L 81 * * * * 2192 * * 3742 * 2449 2127 2844 * * * * 3547 3845 * * 81 0 * * * * * * 2889 0 0 I 82 * * * * * * * 636 * 3568 * * * * * * * 1877 * * 82 0 * * * * * * 2889 0 0 E 83 * * * 0 * * * * * * * * * * * * * * * * 83 0 * * * * * * 2889 0 0 L 84 3764 * * * * * * 2966 * 2765 1762 * * * * * 3930 1782 * * 84 0 * * * * * * 2889 0 0 E 85 * * 3796 634 * * * * * * * 3959 * 2893 * * * 3564 * * 85 0 * * * * * * 2889 0 0 P 86 3568 * * * * * * * * 2893 * * 356 * * * * * * * 86 0 * * * * * * 2889 0 0 P 87 * * * * * * * * * * * * 0 * * * * * * * 87 0 * * * * * * 2889 0 0 F 88 * * * * 497 * * * * 3568 * * 2893 * * * * * * 3789 88 0 * * * * * * 2889 0 0 G 89 * * * * * 0 * * * * * * * * * * * * * * 89 0 * * * * * * 2889 0 0 D 90 * * 724 1688 * * * * * * * * * * * * * 3568 * * 90 0 * * * * * * 2889 0 0 S 91 * * * * * * * * * * * 2893 * * * 209 * * * * 91 0 * * * * * * 2889 0 0 Y 92 * * * * 2641 * * 2893 * * * * * * * * 3568 3564 * 899 92 0 * * * * * * 2889 0 0 I 93 * * * * * * * 0 * * * * * * * * * * * * 93 0 * * * * * * 2889 0 0 V 94 * * * 2688 * * * 1825 3568 * * * * * * * 2651 2439 * 2893 94 0 * * * * * * 2889 0 0 V 95 * * * * * * * 1375 * * * * * * * * * 703 * * 95 0 * * * * * * 2889 0 0 G 96 * * * * * 0 * * * * * * * * * * * * * * 96 101 * 3890 * * * * 2889 0 0 R 97 2834 * 3437 * * 3499 * * * * * 3477 * * 2995 3661 2197 2586 * * 97 0 * * * * * 0 2855 0 1000 G 98 3499 * * 3711 * 616 * * * 3437 * * * * * * 3472 * * * 98 0 * * * * * 0 2855 0 1000 E 99 3472 * 2305 2156 * * * * * * * * 3711 * * 3437 2147 3499 * * 99 0 * * * * * 0 2855 0 1000 Q 100 * * 2474 * 3499 2727 * * 2971 * * * * 2656 * 3867 2147 * * * 100 0 * * * * 0 * 2855 0 1000 Q 101 3930 * 3890 * * * * * 2225 * 3742 * * 1540 2748 3547 * * * * 101 237 * 2723 * * * * 2889 0 0 I 102 * * * * * * * 1382 * 953 * * * * * * * 3326 * * 102 0 * * * * * 0 2758 0 1436 N 103 * * * * * * * * 1234 * * 2043 * * * 3651 1986 * * * 103 0 * * * * * 0 2758 0 1436 H 104 * * * 3651 * * 1240 * * 3571 * * * 2665 * * * * * 1970 104 0 * * * * * 0 2758 0 1436 H 105 2614 3688 3571 * * * 1321 * * * * * * 1863 * * * * * * 105 0 * * * * 0 * 2758 0 1436 W 106 * * * * * * * * * * * * * * * * * * 0 * 106 0 * * * * * * 2889 0 0 H 107 * * * * 1761 * 929 * 3498 * * 3457 * * * * * * * * 107 0 * * * * * * 2846 0 0 K 108 * * * * * * * * 1220 * * * * 1646 1993 * * * * * 108 0 * * * * * * 2846 0 0 S 109 3633 * * 1709 * * * * 1102 * * * 3645 * * 3881 * * * * 109 0 * * * * * * 2846 0 0 G 110 * * * * * 0 * * * * * * * * * * * * * * 110 0 * * * * * * 2846 0 0 S 111 * * * * * * * * * * * * * * * 0 * * * * 111 0 * * * * * * 2846 0 0 S 112 * * * * * * * * * * * * * * * 251 2647 * * * 112 0 * * * * * * 2846 0 0 I 113 * * * * * * * 0 * * * * * * * * * * * * 113 0 * * * * * * 2846 0 0 G 114 * * * * * 0 * * * * * * * * * * * * * * 114 0 * * * * * * 2846 0 0 K 115 * * 3372 * * * * * 1039 * * 3478 * 3489 2725 * 3528 * * * 115 0 * * 0 * * * 2788 0 0 //