HHsearch 1.5 NAME d1rutx4 FAM FILE d1rutx4 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1rutx4.a3m DATE Tue Mar 9 05:12:30 2010 LENG 33 match states, 33 columns in multiple alignment FILT 2 out of 6 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 1.1 EVD 0.4616 2.8804 SEQ >ss_dssp CCTTTCCCCCTTCCEEEETTEEEEGGGCCTTTC >sa_dssp EADEDEEECEEEDEECECEDDCBBDECDBEEEE >ss_pred CCCHHCCCCCCCCEEEEEECEEEEECCCCCCCC >ss_conf 941000323767446885020896168840259 >Consensus tcstcrnrlvpgdrfhyingxxfcehdrptali >d1rutx4 TCSTCRNRLVPGDRFHYINGSLFCEHDRPTALI >UniRef50_C1BKP7(79-102:126) LIM domain transcription factor LMO4 n=1 Tax=Osmerus mordax RepID=C1BKP7_OSMMO E=3e-06 s/c=2.21 id=84% cov=76% -----RNRLVPGDRFHYVNGTIFCEHDRP---- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * T 1 * * * * * * * * * * * * * * * * 0 * * * 1 0 * * * * * * 1000 0 0 C 2 * 0 * * * * * * * * * * * * * * * * * * 2 0 * * * * * * 1000 0 0 S 3 * * * * * * * * * * * * * * * 0 * * * * 3 0 * * * * * * 1000 0 0 T 4 * * * * * * * * * * * * * * * * 0 * * * 4 0 * * * * * * 1000 0 0 C 5 * 0 * * * * * * * * * * * * * * * * * * 5 0 * * * * * * 1000 0 0 R 6 * * * * * * * * * * * * * * 0 * * * * * 6 0 * * * * * * 1091 0 0 N 7 * * * * * * * * * * * 0 * * * * * * * * 7 0 * * * * * * 1091 0 0 R 8 * * * * * * * * * * * * * * 0 * * * * * 8 0 * * * * * * 1091 0 0 L 9 * * * * * * * * * 0 * * * * * * * * * * 9 0 * * * * * * 1091 0 0 V 10 * * * * * * * * * * * * * * * * * 0 * * 10 0 * * * * * * 1091 0 0 P 11 * * * * * * * * * * * * 0 * * * * * * * 11 0 * * * * * * 1091 0 0 G 12 * * * * * 0 * * * * * * * * * * * * * * 12 0 * * * * * * 1091 0 0 D 13 * * 0 * * * * * * * * * * * * * * * * * 13 0 * * * * * * 1091 0 0 R 14 * * * * * * * * * * * * * * 0 * * * * * 14 0 * * * * * * 1091 0 0 F 15 * * * * 0 * * * * * * * * * * * * * * * 15 0 * * * * * * 1091 0 0 H 16 * * * * * * 0 * * * * * * * * * * * * * 16 0 * * * * * * 1091 0 0 Y 17 * * * * * * * * * * * * * * * * * * * 0 17 0 * * * * * * 1091 0 0 I 18 * * * * * * * 1000 * * * * * * * * * 1000 * * 18 0 * * * * * * 1091 0 0 N 19 * * * * * * * * * * * 0 * * * * * * * * 19 0 * * * * * * 1091 0 0 G 20 * * * * * 0 * * * * * * * * * * * * * * 20 0 * * * * * * 1091 0 0 S 21 * * * * * * * * * * * * * * * 1000 1000 * * * 21 0 * * * * * * 1091 0 0 L 22 * * * * * * * 1000 * 1000 * * * * * * * * * * 22 0 * * * * * * 1091 0 0 F 23 * * * * 0 * * * * * * * * * * * * * * * 23 0 * * * * * * 1091 0 0 C 24 * 0 * * * * * * * * * * * * * * * * * * 24 0 * * * * * * 1091 0 0 E 25 * * * 0 * * * * * * * * * * * * * * * * 25 0 * * * * * * 1091 0 0 H 26 * * * * * * 0 * * * * * * * * * * * * * 26 0 * * * * * * 1091 0 0 D 27 * * 0 * * * * * * * * * * * * * * * * * 27 0 * * * * * * 1091 0 0 R 28 * * * * * * * * * * * * * * 0 * * * * * 28 0 * * * * * * 1091 0 0 P 29 * * * * * * * * * * * * 0 * * * * * * * 29 0 * * * * * * 1091 0 0 T 30 * * * * * * * * * * * * * * * * 0 * * * 30 0 * * * * * * 1000 0 0 A 31 0 * * * * * * * * * * * * * * * * * * * 31 0 * * * * * * 1000 0 0 L 32 * * * * * * * * * 0 * * * * * * * * * * 32 0 * * * * * * 1000 0 0 I 33 * * * * * * * 0 * * * * * * * * * * * * 33 0 * * 0 * * * 1000 0 0 //