HHsearch 1.5 NAME d1rb9a_ FAM FILE d1rb9a_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1rb9a_.a3m DATE Mon Mar 8 17:29:21 2010 LENG 51 match states, 51 columns in multiple alignment FILT 111 out of 168 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.2 EVD 0.4472 2.0298 SEQ >ss_dssp CCEEETTTCCEECTTTCBGGGTBCTTCCGGGSCTTCBCTTTCCBGGGEEEC >sa_dssp EDCCAEEDDCDACBEEBBEEDEBEEECDBEEBDEEBEADEDDBDCEDBDEE >ss_pred CCEECCCCCEEECHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHCCC >ss_conf 917727688686632278314779988888859873378998878880149 >Consensus xkxxCxxCgyiYdpxxGdxxxxippGTxFxdLPxxwxCPxCxxxKxxFxxx >d1rb9a_ KKYVCTVCGYEYDPAEGDPDNGVKPGTSFDDLPADWVCPVCGAPKSEFEAA >UniRef50_Q31CN7(43-91:142) Putative rubredoxin n=1 Tax=Prochlorococcus marinus str. MIT 9312 RepID=Q31CN7_PROM9 E=2e-11 s/c=1.44 id=39% cov=96% -RFECRSCGYIYDPSEGNKKLNIPKNTPFLELDGNtFVCPVCRAGKNFYK-- >UniRef50_D2QF23(431-488:498) Rubredoxin-type Fe(Cys)4 protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QF23_9SPHI E=2e-10 s/c=1.15 id=41% cov=96% --YQCPHCFTVYDEQYGDARHGsarhgnarqsIPAGTPFSQLPAEYTCATCDAPKQDMKA- >UniRef50_D2BJ88(238-285:288) Rubredoxin n=3 Tax=cellular organisms RepID=D2BJ88_DEHSV E=7e-12 s/c=1.49 id=43% cov=96% --YECGFCEKRYSPMEGDSSQGIEPNTPFEDLPDSWACPACSRGKEQFKR- >UniRef50_C5BAY5(15-61:65) Rubredoxin n=2 Tax=Edwardsiella RepID=C5BAY5_EDWI9 E=2e-11 s/c=1.49 id=42% cov=94% -RLECNLCWWVYDPAQGDRVGQIPPGIPFSALPSHWRCPQCDADKLHF--- >UniRef50_B8BU96(70-108:149) Predicted protein n=1 Tax=Thalassiosira pseudonana RepID=B8BU96_THAPS E=5e-06 s/c=1.34 id=38% cov=78% --WVCKDCGYIYNRAE-------CAGMYFEEQGAGFRCPQCSGPRRRY--- >UniRef50_A5CFU6(3-52:53) Rubredoxin 2 n=1 Tax=uncultured marine microorganism RepID=A5CFU6_9ZZZZ E=1e-07 s/c=1.15 id=42% cov=98% -KFKCPECGYVFSEEDGDQHEGYPPGTEFVSLPEDFACPDCSVRfKEDFEE- >UniRef50_B7FUY4(63-99:117) Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FUY4_PHATR E=0.0003 s/c=1.25 id=42% cov=75% --YLCPDCGYVF--TKGPK--------AWAALPDSYSCPPCGAPKRRFK-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * K 1 * * * 1801 * * * * 2868 * * * * 1433 2283 * * * * * 1 0 * * * * * * 3213 0 0 K 2 4603 * * 4965 * * * * 1087 6154 * * * 3261 1839 4725 5624 * * * 2 0 * * * * * * 3951 0 0 Y 3 * * * * 2621 * 6505 * * 4749 4795 * * * 6626 * * * 1866 1093 3 0 * * * * * * 4195 0 0 V 4 6039 6675 * 1987 * * 6566 3628 4420 4296 4431 * * 2622 3116 5840 * 2479 * 6291 4 0 * * * * * * 4283 0 0 C 5 * 0 * * * * * * * * * * * * * * * * * * 5 11 7011 * 1000 1000 * * 4292 1000 0 T 6 6841 * 5436 4648 * 4553 * 4859 3094 4041 4975 5579 3091 4001 2327 3832 2908 4713 * * 6 20 7096 7309 1000 1000 * * 4292 1000 0 V 7 3884 6906 2873 3756 6215 5098 4510 2721 5289 4451 6850 5335 5910 6769 6471 3309 5648 2353 * 5898 7 0 * * * * 0 * 4298 0 1000 C 8 * 0 * * * * * * * * * * * * * * * * * * 8 0 * * * * * * 4292 0 0 G 9 * * 5402 4034 5533 734 7074 * 5844 4346 5835 4673 * 4945 5600 4752 * * 3805 * 9 30 5588 * 0 * * * 4292 1544 0 Y 10 * * * * 3699 * 3703 * 6233 6049 6934 * * * * 5295 3706 * 2924 796 10 0 * * * * * * 4292 0 0 E 11 6841 * * 3087 * * * 1287 5085 4857 * * 6278 * 5025 * 5498 1628 * 6548 11 25 * 5860 * * * * 4292 0 0 Y 12 * * * * 5129 * 6272 * * * * * * * * * * * 5440 96 12 79 * 4238 * * * 0 4291 0 1493 D 13 * * 523 4053 * * 4834 6583 5296 * * 4617 * 6813 5878 4218 6424 5078 * 6461 13 26 * 5808 * * 1756 506 4258 0 2247 P 14 6579 * 4946 1520 * 7116 * * 5339 6386 * * 1014 5932 5742 4864 * * * * 14 8 * 7561 * * 1648 555 4257 0 2153 A 15 1679 6127 4291 2115 * 7057 6496 6479 4628 5081 5617 4851 5798 4522 5111 3496 5123 6478 5826 * 15 77 * 4271 * * 1429 670 4266 0 1890 E 16 3903 * 5502 2122 5739 * * 4648 1886 3415 * * * 3609 5382 6239 5090 4123 * 4248 16 138 * 3454 * * * 0 4250 0 2436 G 17 * * * * * 57 * * * * * * * * * 5841 * 5543 * * 17 13 6770 * 2585 263 * 0 4132 1000 3109 D 18 6813 6050 589 3305 * 5543 * 5478 * 5182 * 4501 5659 * * 5416 * 5405 5166 * 18 29 * 5641 * * * 0 4132 0 3109 P 19 4060 * 5020 3574 * * * 6610 3601 5177 * 6441 1074 5252 4939 3452 4033 * * 7111 19 19 * 6225 * * * 0 4129 0 3053 D 20 3427 * 2666 2842 4143 6888 4025 6611 2985 4680 6123 * * 5633 3876 4143 3782 3718 * * 20 33 5459 * 3635 121 * 0 4118 1481 3014 N 21 5446 * 5116 2986 6294 4011 3804 * * 4156 6353 3270 * 3465 3755 3073 3737 6565 4605 3418 21 0 * * * * * 0 4118 0 3014 G 22 6808 * 3349 5817 * 1171 6030 * 4259 5341 6452 3167 3102 3511 * 6380 * * * * 22 45 5417 7111 3322 152 * 0 4118 1000 3014 V 23 * * 5522 5813 4827 * * 757 * 4915 * * * * * * 5423 2059 6747 5170 23 0 * * * * 2910 206 4118 0 2819 K 24 2514 5622 * 4322 * * * * 4626 6174 * * 1026 4532 * 3941 4793 3950 * * 24 26 * 5835 * * 1804 487 4199 0 2718 P 25 2193 * 5351 4185 * * * * 4373 5494 * * 714 * * * 6788 6289 * * 25 0 * * * * 2998 193 4236 0 2660 G 26 * * 4764 4975 * 234 * * 6834 * * 4617 5574 * * 6587 * * * * 26 71 * 4370 * * 1179 841 4250 0 2586 T 27 6309 * * 6469 6658 5710 * 3691 5347 5840 5785 * * * * * 440 3787 * * 27 0 * * * * 578 1598 4220 0 2667 S 28 2153 6586 4263 4464 * 6508 * * 4215 3620 6545 6149 1692 5787 4364 3535 6563 7193 * 5926 28 0 * * * * * 0 4288 0 1654 F 29 * * * * 301 * * 5430 * * * * 6178 * * * * * 2940 5567 29 0 * * * * 2356 314 4288 0 1654 D 30 3143 * 2841 1467 * 6156 * 6213 4024 6520 5353 5370 5114 4339 6923 3180 6269 5198 * * 30 0 * * * * 1045 956 4287 0 1552 D 31 3303 * 1222 2325 * 6580 5147 * 3964 * * 4600 * 4696 6863 4707 5074 6467 * * 31 0 * * * * 1129 881 4290 0 1292 L 32 * * * 6554 4809 * * 3157 * 563 * * * 4249 * * * 3157 * * 32 17 6403 * 0 * 0 * 4292 1000 1000 P 33 4863 * 4294 5666 * 5295 * * 5929 5777 * * 373 * * 4283 6497 * * * 33 51 6039 5666 0 * * * 4292 1556 0 A 34 2714 6583 1675 2036 * 4445 * 5482 3938 5629 * 4773 5713 6496 * 4687 6697 6491 * * 34 8 * 7424 * * * 0 4273 0 1284 D 35 5746 * 1223 3398 * 4683 5522 * 7202 * * 3501 * 4878 5417 3044 3120 * * 6863 35 61 5377 5828 0 * 1458 653 4275 1295 1564 W 36 * * * * 2559 * * * * * * * * * * * * * 630 2441 36 0 * * * * 0 * 4240 0 1458 V 37 4276 3307 * 7198 6385 * 4876 4672 3299 4901 6006 7592 * * 2025 4738 3039 2361 * * 37 0 * * * * * * 4292 0 0 C 38 * 0 * * * * * * * * * * * * * * * * * * 38 0 * * * * * * 4292 0 0 P 39 5533 * * * * * * * * * * 5961 133 * * 4916 5844 * * * 39 0 * * * * * * 4292 0 0 V 40 5040 * 3361 4233 * 6894 * 3442 * 2762 * 4709 5959 3550 4705 5402 3500 1830 * * 40 0 * * * * * * 4292 0 0 C 41 * 0 * * * * * * * * * * * * * * * * * * 41 0 * * * * * * 4292 0 0 G 42 4784 * 2869 4402 5675 1392 * 6541 3841 5762 * 3862 6546 6946 3643 3290 6630 * * * 42 23 5991 * 2616 257 * * 4258 1363 0 A 43 1252 5283 6958 5201 * 4092 5271 5781 7456 5226 6400 6454 * 5821 6106 3145 5052 2548 * 6105 43 21 6137 * 0 * * * 4258 1000 0 P 44 3220 * 3721 5494 * 2073 * * 5841 6487 * * 1732 * 4406 2992 4198 * * * 44 29 5648 * 0 * * * 4258 1405 0 K 45 4919 * * * 6193 * * * 365 * 6637 * 7308 5595 3427 * 6469 4824 * * 45 0 * * * * * * 4233 0 0 S 46 3037 * 3326 2609 * 5607 6847 6023 4240 4574 * 4203 6802 5388 3770 2076 3877 6736 * * 46 0 * * * * * * 4232 0 0 E 47 3438 6833 2392 4890 4738 5121 4061 * 3525 5925 5368 4328 * 3034 3263 4315 6377 5409 * 4077 47 0 * * * * * * 4232 0 0 F 48 * * * * 128 * * * * * 5377 * * * * * * * * 4046 48 0 * * * * * * 4210 0 0 E 49 4852 * 6180 1474 * * * * 1794 * * 4898 * 3691 3490 6152 * 3489 * * 49 0 * * * * * * 4048 0 0 A 50 3271 * * 2891 * * * * * 5624 * * 1058 * 3247 2907 * 5470 * * 50 0 * * * * * * 3800 0 0 A 51 612 * * * * * * * * * * * * * * 1533 * * * * 51 0 * * 0 * * * 2188 0 0 //