HHsearch 1.5 NAME d1qpma_ FAM FILE d1qpma_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1qpma_.a3m DATE Tue Mar 9 00:23:46 2010 LENG 69 match states, 69 columns in multiple alignment FILT 85 out of 89 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.5 EVD 0.4530 1.7083 SEQ >ss_dssp CCCCBCHHHHHTSTTSCSSHHHHHHHHHHTTCCEEEESCSSSSCEEEECGGGSCHHHHHHHHHHHHTTC >sa_dssp EEECCCBEDADDBEDBDEEDECACEEBEEEEBDEEEDEBEEEEEBCCABBEDADEEBDEDBEDCEEEEE >ss_pred CCEEECHHHHHCCCCCCCCHHHHHHHHHHCCCHHCEECCCCCCCEEEEEHHHCCHHHHHHHHHHHCCCC >ss_conf 960416899818999998868899999734812100104577850688468789999999999843579 >Consensus xxxWxtaxELaglpglPxtxxgvxxxAxrexWxxrxrxGxxgGkxxEYhissLPxxxqxxLxxrxgxxx >d1qpma_ KSIWCSPQEIMAADGMPGSVAGVHYRANVQGWTKRKKEGVKGGKAVEYDVMSMPTKEREQVIAHLGLST >UniRef50_A3YA61(29-91:253) Prophage MuSo2, transcriptional regulator, Cro/CI family protein n=7 Tax=Gammaproteobacteria RepID=A3YA61_9GAMM E=3e-06 s/c=0.83 id=30% cov=83% ---WVVASEVSGRDGFPTSDRwtrnHLKELASNKPHLVRKRRGT---KAFEYHVSLLPKETQESLL------- >UniRef50_Q1JYS1(10-74:636) Bacteriophage Mu transposase n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JYS1_DESAC E=0.0001 s/c=0.73 id=19% cov=90% ---WGTAKEYceEGLPGLPTTERRCLDRLGKFAESfANKSRQRNGSKATEFHYSILPPKSQAPLAQR----- >UniRef50_D2BRS4(2-69:140) MuA-transposase/repressor protein CI DNA-binding protein n=6 Tax=Enterobacteriaceae RepID=D2BRS4_DICD5 E=5e-15 s/c=1.20 id=30% cov=96% ---WFTTNELLGVAGLPKSRQGLNKKAKDHGWERRRRKGVQ-GKGVEYAIWSLPEEVKATLMRATLMGT >UniRef50_D2NHS7(29-80:169) Hypothetical phage protein n=1 Tax=Escherichia coli SE15 RepID=D2NHS7_ECOLX E=0.0004 s/c=0.88 id=24% cov=72% ---WLTAEEFTHIEGMPGTARGARMRLEKLASLHPEiRRKRTAGKGVVYHISA----------------- >UniRef50_D2TQ32(1-65:695) Phage transposase n=14 Tax=Gammaproteobacteria RepID=D2TQ32_CITRO E=6e-15 s/c=1.26 id=23% cov=96% --MFASVKELVGLPGMPGTEQGVRYSIRKYATSETSRRRQEGTKGFEYSIDCLPEVTQQALRERYAL-- >UniRef50_A4EV07(8-77:210) Putative uncharacterized protein n=1 Tax=Roseobacter sp. SK209-2-6 RepID=A4EV07_9RHOB E=3e-09 s/c=0.90 id=27% cov=96% ERVWWSAKDLASakLPGLPGTVRGVNLVAERKGWAKQPnaiKHRPGRSGGLFYHWSILPLKTRLRLLKDL---- >UniRef50_B8DK74(5-62:732) Transposase-like Mu n=3 Tax=Desulfovibrio vulgaris RepID=B8DK74_DESVM E=4e-06 s/c=0.91 id=30% cov=81% ----YTTRDLLPLLGI-SSESTVIRRASREGWTSRPRKGRGGGN--EWLLASMPKSTRKALL------- >UniRef50_B9JYF3(2-67:690) Transposase protein n=3 Tax=Rhizobiales RepID=B9JYF3_AGRVS E=1e-05 s/c=0.77 id=26% cov=84% ---WFSLAELAqmQLPDLPHNMAGLHRVATEANWREhpthaRKVKGPTK-PVWLYHIALLPAPARTRI-------- >UniRef50_A7JV30(2-67:656) Bacteriophage transposase n=1 Tax=Mannheimia haemolytica PHL213 RepID=A7JV30_PASHA E=2e-14 s/c=1.21 id=31% cov=94% ---WFLAKEIAGLSGVPELPNSVSRLATKEGWQKRQIQGV-RGVTYEYHLTSLPIETQQQLRLNAALA- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * K 1 * * * 1640 * * * * 558 * * * * * * * * * * * 1 0 * * * * * * 2837 0 0 S 2 * * 4299 4010 * * * * 975 * * 4473 * * 3363 2081 * * * * 2 0 * * * * * * 3461 0 0 I 3 * * * 1712 * * * 3102 * 3834 1894 * * * * * 5220 2236 * * 3 0 * * * * * * 3756 0 0 W 4 * * * * 3520 * * * * 5981 * * * * * * * * 218 4748 4 12 * 6932 * * * * 4630 0 0 C 5 4460 5277 * * 1245 5270 * 6411 * 2820 5592 * * * * * * 3684 4100 2550 5 0 * * * * 0 * 4602 0 1000 S 6 4433 * * 5557 * * * 6109 * 4487 6577 6222 6891 * 5615 1594 1092 5625 * * 6 0 * * * * * * 4596 0 0 P 7 626 * * * * * * 4790 * 4758 * * 3503 * * 5359 3863 3357 * * 7 0 * * * * * * 4596 0 0 Q 8 2533 * 6101 4912 * 6284 6421 * 1748 * 6324 3917 7141 3718 3766 3016 4025 5457 * 6145 8 0 * * * * * * 4596 0 0 E 9 6658 * 3943 206 * * * * 5002 * * * * 5212 * * * * * * 9 0 * * * * * * 4601 0 0 I 10 5583 4296 * * 4927 * * 2610 * 571 * * * * * * * 4936 * 5293 10 203 2929 * 1000 1000 * * 4601 2989 0 M 11 738 * * 4447 * * * 4599 * 3115 4077 * * * * 5643 4419 3797 * * 11 110 4131 5963 1000 1000 * * 4630 2413 0 A 12 3377 * 3562 4212 * 955 4604 * 5554 6037 * 4176 6056 4690 4761 5281 * * * * 12 177 3117 * 1000 1000 * 0 4624 2871 1000 A 13 3966 * * * 7008 * * 3124 6333 720 5276 * * 6139 4975 6800 * 3346 * 6085 13 35 6780 6097 1000 1000 0 * 4624 1000 1000 D 14 4072 * 3918 3996 * 3289 * 5422 4715 4653 * * 973 4508 * 4622 * 6119 * * 14 0 * * * * * 0 4624 0 1000 G 15 4605 6243 3528 5505 * 540 * 6017 * 5658 * 5320 4817 5222 * 6312 6155 * * * 15 85 4130 * 1847 470 0 * 4624 2004 1000 M 16 * * * * 3752 * * 3941 * 890 1978 * * * * * * 3899 * * 16 92 * 4021 * * * * 4626 0 0 P 17 5961 * 6172 * * * * * * * * 5441 116 * * 5353 * * * * 17 0 * * * * 2096 384 4583 0 2160 G 18 4223 * * 4910 * 2158 5587 6121 2717 5582 * 5031 6199 5224 * 2304 2644 4390 * * 18 20 6152 * 2000 415 0 * 4596 1000 2005 S 19 6204 * 5079 * 6229 6240 5362 * * 5418 * 5298 * 6348 * 1749 941 * * 5235 19 0 * * * * * * 4626 0 0 V 20 3143 * 3653 2337 * 5598 * 6423 2858 6149 5677 5847 2683 4291 4695 6424 5606 3177 * * 20 0 * * * * * * 4626 0 0 A 21 3899 * 6136 * 5980 4909 * * 3409 * 5967 5175 4813 2091 1614 3363 4740 * * * 21 29 5649 * 2000 415 * * 4626 1000 0 G 22 3339 * * * * 817 5649 * 6012 * * 2895 * 6145 3745 4429 5124 * * * 22 0 * * * * * * 4626 0 0 V 23 4847 4210 * * 6149 * * 1985 * 2626 * * * * * * 5980 1100 * * 23 12 6863 * 2000 415 * * 4626 1000 0 H 24 4990 * 5535 5739 * * 3824 3939 5167 4421 * 2449 * 4674 1662 4528 3303 7343 6204 6040 24 47 4971 * 2000 415 * * 4626 1544 0 Y 25 4590 * 3435 3300 6975 6053 7043 5387 2677 2981 5075 * * 4026 2175 6817 * * * 3243 25 10 * 7124 * * * * 4626 0 0 R 26 * 6779 * * 5076 * 5594 4259 2195 2899 3896 * * 4217 1735 4209 * 4493 * 5965 26 0 * * * * 0 * 4627 0 1000 A 27 288 * * * * * * 4450 * 3138 * * * * * * 5528 * * * 27 29 5637 * 2000 415 * * 4624 1000 0 N 28 4228 * 5482 2915 * 3919 * * 1454 6360 * 5729 * * 2563 4011 3966 6255 * 5567 28 0 * * * * * * 4624 0 0 V 29 3859 * 5572 4479 * 5846 5637 * 1855 * * 4921 * 4834 1373 4846 4338 6267 * * 29 17 6436 * 1000 1000 * * 4624 1000 0 Q 30 5679 * 4035 1245 5331 6055 5478 * 4215 4160 * 6350 * 2745 5507 3475 6436 * * 4628 30 0 * * * * * * 4624 0 0 G 31 2765 * 4121 * * 1373 5275 * 4403 5443 * 2633 4084 * * 3630 * * * 6335 31 0 * * * * * * 4624 0 0 W 32 * * 5846 2886 * * 5651 * * * * * * * * 4957 5692 5983 396 * 32 27 5750 * 2172 362 * * 4624 1440 0 T 33 4471 * * 3922 * 5566 * 4515 3681 2625 5846 5300 3299 2557 3391 3900 3943 5338 5827 * 33 52 4813 * 700 1379 * * 4624 1501 0 K 34 3517 4408 6426 4013 5294 6984 4130 * 2154 * * 4709 * 5459 4274 2217 4082 5115 6799 4259 34 71 4389 * 2322 322 * * 4624 2052 0 R 35 * * * 4506 * * 4103 5878 * 6121 * 5330 4976 3266 565 * 5691 * * 6546 35 44 5050 * 723 1343 * * 4624 1600 0 K 36 * * 6678 2820 6073 * * * 1604 * * 6894 2832 3111 2673 5010 6425 4613 * * 36 127 3569 * 1214 814 * * 4624 2430 0 K 37 5189 * * 5878 * * 6648 4412 3557 * * * * 5097 753 5330 4941 2903 * * 37 99 6040 4293 1000 1000 * * 4624 1000 0 E 38 2845 * 6836 2649 * * 4760 6823 2950 6783 * 6026 4490 3405 2208 4173 5221 4433 * 6755 38 143 * 3405 * * * 0 4573 0 2236 G 39 5226 * * * * 431 * * 3681 * * 6175 * 5199 3154 * * * * * 39 223 5761 3003 0 * 1638 559 4565 1000 3140 V 40 4322 5835 * * * 5668 * 4635 3688 4872 * * 4557 5223 1683 4751 2914 2249 * * 40 216 * 2848 * * 429 1958 4599 0 3351 K 41 4091 * * 3984 * 1539 * * 2743 * * 4239 * 2598 4117 5381 4091 5252 * * 41 142 * 3411 * * 833 1189 4557 0 3176 G 42 4936 * * * * 781 * 6506 3102 * * * * 5190 2390 4658 * * * * 42 131 5866 3845 1000 1000 649 1465 4830 1000 3040 G 43 * * * * * 305 * * * * * * 5957 * * 2840 4842 * * * 43 182 * 3074 * * 178 3108 4522 0 2928 K 44 * * * 5000 * 2516 * 6628 1149 * * 3403 4176 * 3679 6193 6168 3691 * * 44 135 * 3481 * * 1519 619 4741 0 2912 A 45 1644 * * * * 1211 * 4717 4841 4632 * 5917 * * 4616 * 4782 4598 * * 45 0 * * * * 811 1217 4710 0 2848 V 46 * * * 5534 1839 * 5933 4265 5710 2632 6140 6310 * * 4722 * 4527 2336 3371 4399 46 50 6007 5750 1000 1000 0 * 4700 1000 2227 E 47 5068 * * 173 6229 * * * 5787 5596 * * * * * * * 5000 * * 47 0 * * * * * 0 4724 0 1000 Y 48 * * * * 3454 * * * * * * * * * * * * 5655 4501 243 48 23 * 6000 * * 0 * 4724 0 1000 D 49 3840 * 4933 6162 * * 749 5873 * 4499 * 4488 5335 5245 * 3313 * 6045 * 5983 49 0 * * * * * 0 4698 0 1000 V 50 5241 * * * 4460 * * 1287 * 2661 6344 * 5311 * * * * 2590 3739 3611 50 0 * * * * * 0 4698 0 1000 M 51 3111 * 3227 * * 5959 6088 * * * 5888 3926 * 5040 5219 1097 3408 6085 6099 5998 51 0 * * * * 0 * 4681 0 1000 S 52 3254 3245 6018 * * 6317 * 4083 * 2513 * 6203 * * * 1019 * 5607 * * 52 0 * * * * * * 4708 0 0 M 53 * * * * 2973 * * 5883 * 392 3413 * * * * * * * * * 53 0 * * * * * * 4664 0 0 P 54 * * 5654 * * * * * * * * * 52 * * * 5989 * * * 54 47 * 4977 * * * * 4664 0 0 T 55 3052 * 5981 2303 * * 6331 3152 3828 3967 6232 * 2674 3901 5719 5945 4420 3596 * * 55 41 * 5170 * * * 0 4632 0 1753 K 56 3015 * 5820 1320 * 4283 * 5069 3937 6169 5961 * 4724 4691 3795 5201 4468 4041 * * 56 0 * * * * * 0 4613 0 2134 E 57 1765 * 5520 5737 * * * 3530 * 5799 * * * 4989 * 4161 1448 3225 * * 57 0 * * * * * 0 4614 0 2134 R 58 5792 * * 5784 5003 * * 6115 4567 4025 * * * 1301 1329 * * 6548 * * 58 0 * * * * 715 1355 4601 0 2134 E 59 1531 * 4105 3037 * * * * 4136 4065 5466 4388 * 2868 4238 6596 3528 * * * 59 0 * * * * 0 * 4608 0 1335 Q 60 1487 * * 3244 * 5642 4450 * 4072 4632 * 6535 4935 3712 3117 4021 5281 4941 * 5859 60 0 * * * * * * 4623 0 0 V 61 * * * * * * * 2678 * 564 * * * * * * * 2871 * 5019 61 0 * * * * * * 4623 0 0 I 62 3378 * * * * * * 3764 5168 1842 4354 * * 3690 1985 3525 * 4839 5466 * 62 19 6290 * 0 * * * 4611 1000 0 A 63 2426 * * 2892 * 5480 6303 * 2978 2652 5265 * * 2922 4042 4442 4421 5152 5752 * 63 0 * * * * * * 4549 0 0 H 64 2450 * 4058 5454 * * 3181 * 4102 * * 5559 * 5762 1125 5188 4641 * * * 64 0 * * * * * * 4546 0 0 L 65 3759 * * * 4193 * * * * 1150 4548 * * 2662 * * 3583 * * 2871 65 0 * * * * * * 4037 0 0 G 66 1771 * * * * 700 * * * 4334 4578 * * * * * * * * * 66 0 * * * * * * 3538 0 0 L 67 * * * * 2188 * * * * 1148 3663 * * * 4024 3419 * 3388 * * 67 0 * * * * * * 3107 0 0 S 68 1122 * * 2959 * 3132 * * * * * * * * * 2661 2838 * * * 68 0 * * * * * * 2760 0 0 T 69 * * * * * * * * * * * * * * * * 0 * * * 69 0 * * 0 * * * 1965 0 0 //