HHsearch 1.5 NAME d1q4ra_ FAM FILE d1q4ra_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1q4ra_.a3m DATE Tue Mar 9 00:05:15 2010 LENG 103 match states, 103 columns in multiple alignment FILT 101 out of 297 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 7.7 EVD 0.4549 0.7404 SEQ >ss_dssp CEEEEEEEEECTTCCHHHHHHHHHHHHTHHHHCTTCCEEEEEECCCSSSCSTTCCEEEEEEESCHHHHHHHHHSHHHHHHHHHHHHTEEEEEEEEECCCC SCC >sa_dssp EBCBBBCABBDEECDEEDBDEABECBCDACEEAEBADCBEDCEDEDEEEEDEDCCBDACACAECEEBBEEBDECECCEECCEDBDDBBEDDDDEDDEDEE EEE >ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHCCHHHHHHHHHHHHHHCCEEEEEEEECC CCC >ss_conf 9169999997899999999999999998653087400001567788422448823899999889899998716988999999998642444899875112 239 >Consensus pIxHiVlfkxkxxxxxexxxxxxxxlxxLxxxipxixxxxxGxxxxxxxxxxxxxxxlxxxFxsxexlxxYxxhPxHxxxxxxxxpxxxxxxvxDfexxx xxx >d1q4ra_ PVKHVLLASFKDGVSPEKIEELIKGYANLVNLIEPXKAFHWGKDVSIENLHQGYTHIFESTFESKEAVAEYIAHPAHVEFATIFLGSLDKVLVIDYKPTS VSL >UniRef50_Q0BAD4(2-101:116) Stress responsive alpha-beta barrel domain protein n=4 Tax=Proteobacteria RepID=Q0BAD4_BURCM E=2e-14 s/c=0.80 id=16% cov=95% -IRHIVMWRVRGDTPAERETAsnlVKTKFEALRGRIPGMLHLEVGLDYS--RVDYACDVVLVTEFDSRGALEAYACHPEHLRVRNEPGDLRIARFQVDYQ AGA--- >UniRef50_Q67XD6(57-151:276) Putative uncharacterized protein At2g32500 n=4 Tax=Arabidopsis thaliana RepID=Q67XD6_ARATH E=3e-10 s/c=0.70 id=19% cov=92% -VEHVCLLKAKEGLSEEVEKDMLDYLYTTQYQMRGIVAISVG--CIGDRNNEYFTHALYMRFQKKEDLDKFYENPFFLKVLNEYVtPFCHGLTNVDYE-- ---- >UniRef50_UPI0001BC3262(2-95:97) hypothetical protein BcroD2_01083 n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=UPI0001BC3262 E=1e-06 s/c=0.58 id=17% cov=91% -LKHFVIFTFEDNfFKEEHFNEYVDAFSRIKEEYPKIKEISIHKNCIDRPAN--MDLMIEMVLEDESVLSEYLNSPEHIRMGKKYNPHVANRVSFDY--- ---- >UniRef50_A9T9N1(112-201:209) Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9T9N1_PHYPA E=2e-05 s/c=0.55 id=16% cov=88% --KRITFVKIKPETTADDMRFLVESISQLPSKCPTVGQASAGSNFSPER-AKGFTYGIMEFFPSTQEEEEVYSSCEHMAWQDTKLKPVAAILI------- --- >UniRef50_Q27111(5-108:111) Diagnostic antigen n=6 Tax=Trypanosoma RepID=Q27111_TRYVI E=5e-08 s/c=0.57 id=18% cov=92% ---HAVFFSLDPEKMAANLpgNAVEENLQRLRDTVPGLLEVNMGRAETAlfpgyVACCGDYTHCLVSKHVDAAAFQACSTHPSQVAFAELLKASFASApI RIDFE------ >UniRef50_B5DCJ1(1-72:73) StcH n=1 Tax=Aspergillus ochraceoroseus RepID=B5DCJ1_9EURO E=0.0008 s/c=0.62 id=20% cov=40% -------------------------------------------------MAKGYDMGVVVLVDYVETLATFFTHPSHDEVHELYMQVCE----------- --- >UniRef50_A4TD49(105-199:214) Stress responsive alpha-beta barrel domain protein n=10 Tax=Mycobacterium RepID=A4TD49_MYCGI E=4e-06 s/c=0.55 id=20% cov=88% ----TLLLRVLPGTEPSVVARFEDELRLMPRYVRSITAWQLSRAQDPTGDA-GWTHVFEQQFTDEAGLMGpYLMHPIHWAVVDRwFDPETTDVIIRD--- ----- >UniRef50_B6QQ58(44-145:145) Stress responsive A/B barrel domain protein n=2 Tax=mitosporic Trichocomaceae RepID=B6QQ58_PENMQ E=2e-07 s/c=0.56 id=18% cov=96% -VERITLFNIPKEEHRAQLVEEYKRLVktAVKDGNPYITNVSFGPAL-PDPRNRGYNFGVKMTFATLEDLKFYdAECPAHQTFKAFLSGRKEgDVLTVYF ENAA--- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * P 1 * * * * * * * * * * * * 0 * * * * * * * 1 0 * * * * * * 5053 0 0 V 2 * * * * 5785 * * 1299 * 2660 * * * * * * * 1262 * * 2 0 * * * * * * 7586 0 0 K 3 5287 * 4820 2700 5974 * 4624 6233 2823 * 6201 * * 3680 1638 * 4058 3602 * 5749 3 0 * * * * * * 7672 0 0 H 4 * * * * * * 153 * * * * * * * 3588 5827 * * * * 4 0 * * * * * * 7992 0 0 V 5 6100 4259 * * 5596 6310 6677 1290 * 4530 4408 * * 6536 * 4499 3415 2047 * * 5 0 * * * * * * 8045 0 0 L 6 4177 5542 * * 6310 6515 * 4049 * 3664 * * * * * * 4658 472 * * 6 0 * * * * * * 8044 0 0 L 7 5089 4826 * * 2912 6171 6406 4015 * 1232 2887 * * * 4649 5435 4815 5552 * 4863 7 0 * * * * * * 8052 0 0 A 8 5925 5734 * * 975 6319 6271 3175 * 2783 4573 * * * * * * 3793 4377 6369 8 15 * 6607 * * * * 8052 0 0 S 9 4682 * * 4277 * * 5254 * 1333 * 6371 4100 * 5538 2766 3594 3254 * 4064 * 9 0 * * * * * 0 8040 0 1000 F 10 5012 * * * 1581 * * 4390 * 1699 5090 * 6406 * * * 5589 2840 4373 5097 10 33 6679 6262 1000 1000 * 0 8040 1000 1000 K 11 5297 6457 5339 4215 * * 6382 * 935 6284 * 4124 4677 5083 3458 5653 3698 6648 * 6287 11 15 * 6561 * * 0 * 8008 0 1764 D 12 3509 * 2256 2417 * 4850 6737 5559 3774 6849 * 4859 1976 5853 6567 5008 6717 * * 6446 12 41 7183 5565 1585 585 * 0 8044 1000 1000 G 13 3840 * 2202 2448 4914 2146 6906 * * 6568 * 4088 3359 6727 * 4407 4689 * * * 13 65 6566 4892 0 * 1576 590 8025 1000 2300 V 14 2675 6724 6653 4360 5686 4145 * 3053 5194 3489 6504 * * * * 5038 2492 2154 * 5751 14 27 5773 * 1000 1000 766 1279 7992 1421 3291 S 15 6406 * 3766 4760 * 3630 5368 6620 4786 4861 6144 4916 3597 5456 5515 1982 1919 * * * 15 27 6662 6893 2000 415 980 1020 8024 1000 1814 P 16 2505 * 3094 2370 * 5738 * 5077 4210 5652 5359 6349 2814 4317 5108 3724 4842 6391 6554 * 16 27 5774 * 1585 585 984 1016 8036 1401 1744 E 17 2550 * 2942 1322 5722 5690 * * 5433 * * 5088 5097 4198 6028 4183 5021 5414 * * 17 18 * 6361 * * * 0 8054 0 1000 K 18 4758 * 3090 2045 6548 5047 4542 * 4008 6424 * 4116 6631 2270 4072 4714 5650 4234 * * 18 24 5911 * 1627 564 0 * 8037 1610 1639 I 19 5114 6652 * 3422 4692 5663 5823 2923 3108 2987 5179 * * 4511 3252 7196 4232 2672 6369 6342 19 29 5630 * 1424 673 * * 8052 1624 0 E 20 2719 * 3298 2402 * 5355 5470 * 2864 4242 5621 4645 6496 3679 3658 4830 5468 4896 * * 20 14 6677 * 2000 415 * * 8052 1000 0 E 21 2374 * 3457 2111 6004 5498 5859 6951 3534 * 6652 4885 * 3467 3907 4309 3577 * * * 21 15 6565 * 1585 585 * * 8052 1000 0 L 22 3449 * * 6393 2451 5674 6122 2644 6831 2965 2872 * 6690 * 5440 * 6906 2601 5503 5761 22 0 * * * * * * 8052 0 0 I 23 3506 5705 6563 3617 5238 5999 6840 3410 3708 2139 3834 * * 4655 4690 4676 5097 3227 * 5127 23 13 * 6831 * * * * 8052 0 0 K 24 2497 * 2562 2095 * 4605 6562 6590 3169 * * 4077 * 4686 4600 3868 4699 * * * 24 15 * 6579 * * * 0 8053 0 1000 G 25 2034 * 3550 3640 * 3544 6598 3936 4246 4733 5445 5509 * 4057 4036 4088 3800 * * 4572 25 0 * * * * 951 1051 8046 0 1678 Y 26 4078 4712 * * 3023 4002 * 2911 6333 1238 4846 * * * 6590 6951 5964 4486 7084 5229 26 16 6492 * 0 * * 0 8053 1000 1000 A 27 3617 * 5503 3510 5654 3988 5454 6203 3256 4167 5395 3728 * 4566 2319 3621 * 4553 6595 4238 27 17 6398 * 1000 1000 0 * 8053 1000 1000 N 28 2338 * 3393 4500 * 4663 5473 6629 3977 6318 * 3834 6640 4347 3095 3074 2740 * * * 28 48 5593 6421 2000 415 * * 8060 1758 0 L 29 4754 * * * 4509 * 6872 4238 * 757 2765 * * 5343 * 5618 5067 5530 * 5505 29 132 5068 4124 2238 344 * 0 8033 1998 1000 V 30 3259 * 6261 6684 * 5094 * 6268 2052 3593 4982 5223 2323 3832 3885 4542 6281 5105 * 5300 30 106 4897 4753 426 1968 472 1840 7991 2315 3949 N 31 2909 * 2895 4104 * 2654 5223 5752 4342 5600 * 4131 5401 5669 4118 2861 5062 6583 * 3963 31 84 5852 4670 1028 973 344 2235 8005 1730 3193 L 32 3461 4802 5042 2819 * 4952 5068 6292 3621 3822 * 4728 * 2910 4261 4608 3110 3620 * 6232 32 15 * 6573 * * 0 * 8035 0 3095 I 33 * 3588 * * 5175 * 5275 1321 4731 3615 4642 5394 6149 * 6769 5527 5566 2377 * 5547 33 55 4729 * 2694 242 0 * 8042 2502 1000 E 34 5102 * 4324 3621 * 4587 6535 * 4056 5756 * 5206 1000 5583 3927 3997 5544 6524 * * 34 30 6206 7205 3000 193 * * 8060 1000 0 P 35 5594 * 4918 3457 * 1327 5674 6738 4327 4618 5130 6342 4385 4956 6481 3605 6004 4815 6319 4085 35 11 7041 * 1000 1000 0 * 8052 1000 1000 X 36 3848 6477 6830 6511 6153 6192 6506 2049 * 2366 4177 * * 6497 5070 5760 5688 1780 * * 36 0 * * * * * * 8063 0 0 K 37 6624 * 5123 4565 * 5384 * 3851 2646 2435 6496 6329 6496 6785 2818 5043 2777 3067 * * 37 0 * * * * * * 8060 0 0 A 38 3343 * 4244 3138 4765 4287 4004 6673 4873 4540 6856 3573 5490 4766 4541 2098 5262 6779 * 4855 38 29 5652 * 0 * * * 8060 1727 0 F 39 4433 6386 * 6779 2301 * * 2708 6535 2763 4945 6435 * 5908 * * * 2329 4090 3321 39 17 6397 * 1585 585 * * 8060 1000 0 H 40 4740 * 4138 2619 5494 * 3869 5406 5101 4852 5878 4952 4609 3818 4450 2393 3113 4583 * 6589 40 0 * * * * * * 8060 0 0 W 41 3154 4501 6529 * 3152 5045 4171 3618 6354 3021 6213 6524 * * * 5078 4470 2125 4436 4538 41 29 5642 * 2701 241 * * 8060 1654 0 G 42 3687 * * 5360 5098 522 4858 5872 6397 6493 6529 6188 6206 * * 5562 5176 6496 * * 42 81 4806 5706 1677 541 * * 8060 2248 0 K 43 4232 6409 4898 4929 5700 6861 6093 4347 3303 4323 6553 * 2734 * 2120 4075 3519 3963 6976 5953 43 51 5507 6266 2862 214 * 0 8053 1691 1688 D 44 3601 * 2591 6364 6352 4631 6110 4362 6626 * * 1602 3185 4253 * 4467 4981 4477 * * 44 54 6134 5486 3170 170 516 1733 8038 1000 1841 V 45 3338 4627 5066 4266 3910 * 6320 3395 6764 2440 5103 4096 * 4457 5351 5043 4221 2653 * 6550 45 110 5067 4516 994 1006 593 1569 8020 2311 2320 S 46 3501 * 3309 * * 3660 6462 4507 4075 5069 * 4309 4850 * 4268 1570 4109 5189 * 5157 46 84 * 4141 * * 1247 789 8011 0 3222 I 47 4902 * 3603 4829 4124 4260 6532 4284 6268 3157 6415 5164 1989 6410 6263 3149 3793 5225 5357 * 47 129 4829 4307 1942 435 2081 389 7984 2170 4070 E 48 5101 6000 2498 1847 6507 6292 6059 * 5040 6386 * 6426 4108 6523 3225 2930 4649 4042 * * 48 134 4770 4267 687 1400 501 1768 7894 2267 4590 N 49 2679 * 2807 3112 6394 3066 6909 * 4539 5466 * 3851 3638 4401 3171 4699 6683 5398 * * 49 114 4647 4783 1151 864 1802 488 8014 2435 3875 L 50 3722 5247 4501 4843 5717 6777 5665 3970 3931 3654 4707 3534 4890 4830 2224 4281 4455 4326 * 7004 50 126 4864 4351 1265 776 812 1216 7989 2091 4181 H 51 2590 6074 2950 4933 * 4015 5661 5533 5947 * 6287 3205 5030 4013 5753 2470 3679 4860 * 6381 51 102 * 3877 * * 1947 433 7930 0 3920 Q 52 4138 6383 4198 2808 6184 2763 5761 * 2140 * 6892 5313 6542 3361 3667 3758 5515 * * 6456 52 63 * 4560 * * 1937 437 7816 0 5071 G 53 5633 * 2579 5987 * 1262 6513 6081 4677 * * 3741 4407 * 4669 3092 5349 * * 6399 53 20 * 6178 * * 795 1239 7909 0 4949 Y 54 * 6385 * * 1467 * 4476 5499 * 5062 4755 5409 * * * * 6557 4938 4483 1393 54 93 5482 4639 0 * 791 1245 8032 1656 3580 T 55 5293 * 1704 5038 * 6540 4785 6432 6652 5364 * 4058 6321 4152 6187 3917 1575 * * * 55 0 * * * * 1729 518 8015 0 3666 H 56 6034 * 7100 * 3206 * 1735 3607 * 4582 3955 * * 4949 * 6487 6823 2880 5127 2612 56 14 * 6669 * * 0 * 8030 0 3054 I 57 1493 4097 * * 4853 1864 * 3879 6479 * 4318 * * * * 4278 * 3379 * * 57 0 * * * * * 0 8058 0 1000 F 58 4927 * * * 2145 * 6119 3062 * 1403 6387 * * * * 6332 6555 3161 4772 4461 58 16 * 6536 * * 0 * 8058 0 1000 E 59 6672 5086 6780 4374 4901 * 6351 2797 6393 3140 4926 5730 * 6732 5326 4189 3614 1917 * 3307 59 0 * * * * * 0 8057 0 1000 S 60 2333 4282 * 5446 * 4704 * 4168 * 4186 2841 * * 5452 * 2410 4346 2575 * 6550 60 0 * * * * 0 * 8057 0 1000 T 61 4633 6925 2742 2976 4819 5104 6547 6335 5494 4414 5517 * * 4909 2582 6816 2739 2978 * 6563 61 0 * * * * * * 8063 0 0 F 62 * 6189 * * 466 * 4458 4722 * 3398 * * * * * * * 4015 * 5496 62 0 * * * * * * 8063 0 0 E 63 3015 * 2260 2242 * * 5567 * 3492 6929 6550 6011 3048 4540 4549 4955 5041 4553 * * 63 0 * * * * * * 8063 0 0 S 64 5422 * 1617 * * 4513 * * 5527 * * 3123 * 6604 6581 1541 3322 * * 7379 64 0 * * * * * * 8063 0 0 K 65 3646 * 6613 2154 6611 6430 6782 5092 2771 3127 5586 6690 3776 4092 4197 4890 4517 4076 * 6554 65 0 * * * * * * 8059 0 0 E 66 2212 * 2904 1483 * 5053 * * 4827 * * 4586 * 2913 * 5552 5649 6413 * * 66 0 * * * * * * 8059 0 0 A 67 1413 * 1641 4531 6189 3750 5628 * * * * 5591 * 6531 * 4978 5568 4466 * 5474 67 0 * * * * * * 8059 0 0 V 68 6128 6421 * 6023 4265 * 4053 4280 * 1200 5566 * * 6410 3052 * * 3550 5577 3323 68 0 * * * * * * 8059 0 0 A 69 2959 * 2277 2389 * 6576 6519 * 3687 5677 6309 4041 * 3092 3568 4315 6683 6665 6532 * 69 0 * * * * * * 8059 0 0 E 70 2052 * 4429 2999 5776 4191 6786 5137 4988 5772 6430 5062 * 5397 3425 4547 3711 3780 * 3703 70 18 6309 * 0 * * * 8059 1000 0 Y 71 * 6214 * * 3020 * * * * 6330 6413 * * * * * * 6023 6054 306 71 32 5499 * 0 * * * 8059 1596 0 I 72 2968 * 3940 7126 7373 5110 4869 5132 5007 2640 4003 4101 * 2707 5070 3855 4716 4203 6796 4773 72 42 5132 * 0 * * * 8059 2032 0 A 73 3531 6523 3447 3241 * 4250 5212 6641 3172 6211 6309 3911 4546 4222 5472 3972 3053 3199 * * 73 56 4721 * 2863 213 * * 8059 2191 0 H 74 5581 4934 2178 * * * 910 * * * * 3631 * * * 3511 * 6491 * 6189 74 0 * * * * * * 8059 0 0 P 75 4403 6023 4372 4552 * * 5725 * * * * 5561 368 6491 * 6507 6703 * * * 75 0 * * * * * * 8059 0 0 A 76 1946 6594 3177 2786 4766 4735 5513 4366 5719 3703 * 5784 * 6665 6188 4171 4834 3767 * 5139 76 0 * * * * * * 8059 0 0 H 77 * * * * 6545 * 293 * * 6330 * * * 5299 4827 6189 * 6188 * 3787 77 13 6845 * 0 * * * 8059 1000 0 V 78 4067 * 4111 5091 * 6730 5263 4161 3786 2808 3587 * * 2583 4140 * 4627 2504 6309 6597 78 0 * * * * * * 8059 0 0 E 79 1608 * 4287 2616 * 4971 6461 * 3295 5424 * 4157 5315 4077 3003 6352 6397 * * * 79 65 5046 6171 1078 926 * * 8047 2357 0 F 80 3536 * * * 1802 5256 6349 3430 6429 2573 5530 * * * * 6403 6351 2187 5133 5482 80 34 5414 * 0 * 0 * 8007 1697 1000 A 81 2616 * 4602 * 6323 3955 7390 3119 2891 3919 5567 6938 * 4674 3609 4725 4851 2729 6571 6319 81 97 3941 * 0 * * * 8025 3528 0 T 82 2339 * 2811 2418 * 6747 * * 2372 * * 3444 5842 4954 4280 5206 4932 5850 * * 82 32 5500 * 1310 745 * * 8020 1659 0 I 83 4675 6933 * 2645 2956 6556 6033 3564 2993 3397 6665 6419 * 4682 2777 5541 4222 * * 4283 83 171 3165 * 0 * * * 8020 4525 0 F 84 3638 5609 * * 3314 5387 4751 3092 6008 2391 5476 6124 6486 * 5491 6865 5442 2337 5108 3548 84 44 5042 * 1087 918 * * 8020 2412 0 L 85 4258 * 5180 3809 6861 4499 * 4626 2348 2366 4640 5449 * 6686 3026 4158 6302 3990 4717 * 85 66 4488 * 0 * * * 8017 2552 0 G 86 3809 * 4149 4847 * 3843 4859 * 4731 6613 * 4370 989 6088 6147 3606 6299 6690 * * 86 35 5390 * 0 * * * 8017 1674 0 S 87 4378 * * 5434 3699 4921 4004 3198 6573 2457 7066 5179 5027 6106 4804 5004 4645 2990 * 2817 87 0 * * * * * * 8010 0 0 L 88 3046 3853 * 6236 4334 * 6553 3347 4585 2576 * * * * 4389 4014 4269 2348 4065 6517 88 40 5209 * 2132 373 * * 8010 2145 0 D 89 2670 5399 2240 1893 * 6850 5411 4833 4250 * * 5118 6148 * 4964 4528 3654 6671 * 6507 89 48 4936 * 1442 662 * * 7992 2226 0 K 90 4323 * 2302 4203 * 2464 * 6318 2858 * * 4745 * 3846 2825 3835 5416 * 5663 * 90 32 5500 * 0 * * * 7938 1590 0 V 91 3507 6222 * 6106 4805 6401 * 2846 * 2882 * * * * 2417 4772 4743 1798 * 6253 91 23 5984 * 0 * * * 7798 1000 0 L 92 3848 * * 6147 4635 * * 2539 5593 2040 3649 * * 4963 5297 4962 3521 2572 * 5991 92 0 * * * * * * 7787 0 0 V 93 2888 4121 * 5326 6249 * * 3235 * * 5333 6303 * 6253 4622 3343 4009 1377 6179 6321 93 15 * 6554 * * * * 7756 0 0 I 94 3649 * * * 2217 * * 2917 * 3273 6339 * * * 5908 * * 1827 * 2658 94 0 * * * * 0 * 7702 0 1000 D 95 * * 167 * * 6092 * * * * * 5863 * 4100 * * * * * 5700 95 0 * * * * * * 7694 0 0 Y 96 * * * * 1046 5931 5583 5955 * 3757 * * * * * * * * 5819 1432 96 0 * * * * * * 7384 0 0 K 97 * * * 807 * * * * 3454 * 4470 5783 5520 4521 5627 4830 4421 3232 * * 97 0 * * * * * * 6842 0 0 P 98 2111 * * 5036 * * * * * 3834 * 3749 4014 * * 5226 * 986 * * 98 0 * * * * * * 6263 0 0 T 99 2540 * 3846 * * 3869 * * * 3973 * * 3074 * * 2402 3009 2365 * * 99 0 * * * * * * 5293 0 0 S 100 987 * 2567 * * * * * * * * 3491 * * * 3580 3789 3611 * * 100 0 * * * * * * 4627 0 0 V 101 * * * * * * * 2104 * * 3146 3308 * * * 3107 * 1193 * * 101 0 * * * * * * 4136 0 0 S 102 1835 * * * * * * * * * * * * * * 474 * * * * 102 0 * * * * * * 3712 0 0 L 103 * * * * * * * * * 0 * * * * * * * * * * 103 0 * * 0 * * * 1658 0 0 //