HHsearch 1.5
NAME  d1pvma3
FAM   
FILE  d1pvma3
COM   /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1pvma3.a3m 
DATE  Mon Mar  8 18:07:38 2010
LENG  36 match states, 36 columns in multiple alignment
FILT  1 out of 5 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
NEFF  1.0 
EVD   0.4559  2.5850 
SEQ
>ss_dssp
CCBCTTTSSSBEEEEECTTSCEEEEEESCTTCCCBC
>sa_dssp
EEEAEEDDEBCBDCCECEEEDDECDDBDCEECECDE
>ss_pred
CCCCCCCCCCEECCHHCCCCEEEEEEECCCCCCCCC
>ss_conf
963631181001000167770799982877677459
>Consensus
qhlcpkcgvgvlepvynekgeikvfrcsnpacdyee
>d1pvma3
QHLCPKCGVGVLEPVYNEKGEIKVFRCSNPACDYEE
#
NULL   3706	5728	4211	4064	4839	3729	4763	4308	4069	3323	5509	4640	4464	4937	4285	4423	3815	3783	6325	4665	
HMM    A	C	D	E	F	G	H	I	K	L	M	N	P	Q	R	S	T	V	W	Y	
       M->M	M->I	M->D	I->M	I->I	D->M	D->D	Neff	Neff_I	Neff_D
       0	*	*	0	*	0	*	*	*	*	
Q 1    *	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	1
       0	*	*	*	*	*	*	1000	0	0	

H 2    *	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	2
       0	*	*	*	*	*	*	1000	0	0	

L 3    *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	3
       0	*	*	*	*	*	*	1000	0	0	

C 4    *	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	4
       0	*	*	*	*	*	*	1000	0	0	

P 5    *	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	5
       0	*	*	*	*	*	*	1000	0	0	

K 6    *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	6
       0	*	*	*	*	*	*	1000	0	0	

C 7    *	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	7
       0	*	*	*	*	*	*	1000	0	0	

G 8    *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	8
       0	*	*	*	*	*	*	1000	0	0	

V 9    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	9
       0	*	*	*	*	*	*	1000	0	0	

G 10   *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	10
       0	*	*	*	*	*	*	1000	0	0	

V 11   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	11
       0	*	*	*	*	*	*	1000	0	0	

L 12   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	12
       0	*	*	*	*	*	*	1000	0	0	

E 13   *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	13
       0	*	*	*	*	*	*	1000	0	0	

P 14   *	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	14
       0	*	*	*	*	*	*	1000	0	0	

V 15   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	15
       0	*	*	*	*	*	*	1000	0	0	

Y 16   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	16
       0	*	*	*	*	*	*	1000	0	0	

N 17   *	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	17
       0	*	*	*	*	*	*	1000	0	0	

E 18   *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	18
       0	*	*	*	*	*	*	1000	0	0	

K 19   *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	19
       0	*	*	*	*	*	*	1000	0	0	

G 20   *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	20
       0	*	*	*	*	*	*	1000	0	0	

E 21   *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	21
       0	*	*	*	*	*	*	1000	0	0	

I 22   *	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	22
       0	*	*	*	*	*	*	1000	0	0	

K 23   *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	23
       0	*	*	*	*	*	*	1000	0	0	

V 24   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	24
       0	*	*	*	*	*	*	1000	0	0	

F 25   *	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	25
       0	*	*	*	*	*	*	1000	0	0	

R 26   *	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	26
       0	*	*	*	*	*	*	1000	0	0	

C 27   *	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	27
       0	*	*	*	*	*	*	1000	0	0	

S 28   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	28
       0	*	*	*	*	*	*	1000	0	0	

N 29   *	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	29
       0	*	*	*	*	*	*	1000	0	0	

P 30   *	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	30
       0	*	*	*	*	*	*	1000	0	0	

A 31   0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	31
       0	*	*	*	*	*	*	1000	0	0	

C 32   *	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	32
       0	*	*	*	*	*	*	1000	0	0	

D 33   *	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	33
       0	*	*	*	*	*	*	1000	0	0	

Y 34   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	34
       0	*	*	*	*	*	*	1000	0	0	

E 35   *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	35
       0	*	*	*	*	*	*	1000	0	0	

E 36   *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	36
       0	*	*	0	*	*	*	1000	0	0	

//