HHsearch 1.5 NAME d1pqsa_ FAM FILE d1pqsa_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1pqsa_.a3m DATE Mon Mar 8 16:15:09 2010 LENG 77 match states, 77 columns in multiple alignment FILT 70 out of 74 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.2 EVD 0.4259 0.4286 SEQ >ss_dssp CCEEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEETTTEEEECCSTTHHHHHHHHHHHHCCCEEEEECC >sa_dssp EDECEBEBEEEBEBEDABECABDECCEEEEDCECAEEDBCACBEDEECDDBDEDEDADEACEBBEEDECDCAAADAE >ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCEEEEECHHHHHHHHHHHHHCCCCEEEEEEC >ss_conf 93899997388998999999986741245577876069999817899999960257999999985158607999969 >Consensus xdxxtLxVxxxixfxxLxxxIxxrlrxxgxxxxxxxxxlkyxDxdgdxvxlxxdxDlxxaxdxxxxsxxrxLxixxx >d1pqsa_ SEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKEMLAENNEKFLNIRLY >UniRef50_Q4PBU1(1027-1092:1102) Putative uncharacterized protein n=1 Tax=Ustilago maydis RepID=Q4PBU1_USTMA E=4e-06 s/c=0.79 id=24% cov=87% -DRYVVVVLSSTPFSTLLEKVTKKIRLCSGKNLEHTLRMRYIDEDGDAVLISDDDDVQMAFDSARAS---------- >UniRef50_Q875H9(764-827:844) Guanine nucleotide exchange factor Cdc24 n=9 Tax=Saccharomycetales RepID=Q875H9_CANAL E=5e-11 s/c=1.07 id=35% cov=78% -----LIVNAQIEYNDLLQKIISQIITSNLVADDvNISRLRYKDDEGDFVNLNSDDDWGLVLDML------------- >UniRef50_C5GX11(957-1029:1046) Rho guanyl nucleotide exchange factor n=1 Tax=Ajellomyces dermatitidis ER-3 RepID=C5GX11_AJEDR E=9e-21 s/c=1.38 id=26% cov=94% -NYVTLVIASNILFRSLTDRVDAKLaRFTDRSIGNKSVRLRYRDEDGDFVTIDSDEAVQLAFMEWRDQHQNML----- >UniRef50_O22987(872-943:959) T19F6.16 protein n=7 Tax=rosids RepID=O22987_ARATH E=3e-13 s/c=1.06 id=17% cov=94% -DIIRFRISSGSGIMELKDEVAKRLK-----VDAGTFDIKYLDDDNEWVLIACDADLQECLEIPRSSRTKIVRLLVH >UniRef50_C4QYR2(758-831:838) Guanine nucleotide exchange factor (GEF or GDP-release factor) for Cdc42p n=1 Tax=Pichia pastoris GS115 RepID=C4QYR2_PICPG E=1e-10 s/c=0.91 id=33% cov=91% -----LSVPSSISFHELkLELIKNLRQNVGYELPEyESFRFKFKDEDDDYVRFQSSDDWVIAKEMLEEisdEEQRILEI--- >UniRef50_B9HN04(588-657:675) Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HN04_POPTR E=3e-05 s/c=0.71 id=29% cov=82% -----------WGFRDLQREIAKRFEIDDFSRIG----LKYLDNDHESILLTCDADLEECKDLLGFSQSRTIKITLY >UniRef50_C5Y5Q5(397-458:511) Putative uncharacterized protein Sb05g004570 n=1 Tax=Sorghum bicolor RepID=C5Y5Q5_SORBI E=2e-05 s/c=0.81 id=21% cov=82% --------------ESLDELMSSVIQRLGMGDEKSVIQLLYEDDEGDKVLLTTNSDLTGAVLYAKSSGLKALRLHM- >UniRef50_Q675Z5(19-82:484) PB1 domain-containing protein n=1 Tax=Oikopleura dioica RepID=Q675Z5_OIKDI E=0.0003 s/c=0.73 id=26% cov=79% ------------TFDDLLLMLCRIYS----ADIGDDDLVKYLDSENDWITMNDSNDLSFAIQLAEDDGRKFLKIKV- >UniRef50_Q8J0E4(575-628:639) YALI0F27643p n=1 Tax=Yarrowia lipolytica RepID=Q8J0E4_YARLI E=0.001 s/c=0.83 id=21% cov=69% -DLIAIRVPSDIDYATLHDRLCERLRV-------ETLSLLYKADDGSRVVISNDEDLGAA----------------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 * * * * * * * * * * * 538 * * * 1683 * * * * 1 0 * * * * * * 2806 0 0 E 2 * * 759 3121 * * * * * * * 1765 * * * * * * * * 2 0 * * * * * * 3874 0 0 I 3 4361 * * * 4261 * * 1712 * 3771 * * * 3615 4149 * * 4444 * 1570 3 0 * * * * * * 3874 0 0 F 4 * * * * 1752 4361 * 1757 * * * * * * * * * 2268 * 2727 4 0 * * * * * * 3874 0 0 T 5 3771 * * * * * * 3615 * * * * * * 2356 * 890 3183 * * 5 0 * * * * * * 3874 0 0 L 6 * * * * 3386 * * 3105 * 528 * * * * * * * 3398 * * 6 0 * * * * * * 4654 0 0 L 7 * * * * 4473 4435 * 2405 * 3017 * * * 3780 2477 4363 * 1940 * 4849 7 0 * * * * * * 4654 0 0 V 8 * * * * * * 4452 3455 * 3221 4268 * * * * * * 506 * * 8 0 * * * * * * 4712 0 0 E 9 2713 * 5302 4043 * * 4762 * * 4480 * 3642 1554 3611 * 2496 * * * * 9 0 * * * * * * 4782 0 0 K 10 2748 5050 * 4429 3037 * 5385 * 3666 5468 * 3918 3900 4652 5186 2203 5130 4968 * 4339 10 0 * * * * * * 4782 0 0 V 11 * * 2151 4463 * 3564 * * 4604 * 5583 2491 * 4179 * 2200 4151 3718 * * 11 45 5010 * 0 * * * 4792 1124 0 W 12 5221 * * * * * * 1136 5208 4444 * * * * * 3737 4362 3295 2187 * 12 0 * * * * * * 4824 0 0 N 13 * 6284 3866 4282 * 1853 * * * 5777 5777 4325 5388 * * 2134 1987 * * * 13 0 * * * * * * 4927 0 0 F 14 * 5473 * * 1241 * * 3782 * 3586 * * * * * * * 5419 * 1415 14 0 * * * * * * 4921 0 0 D 15 4051 * 2323 3075 * * 4743 5193 5235 5475 6383 4321 4766 3026 2835 3547 5322 4830 * * 15 0 * * * * * * 5016 0 0 D 16 5570 * 1978 1848 * * 6320 * 6440 * * 3285 * 4380 5839 2586 3495 * * * 16 0 * * * * * * 5016 0 0 L 17 * * * * * * * * * 124 5172 * * * * * * 4202 * * 17 52 4809 * 0 * * * 5014 1000 0 I 18 5553 * 5458 * * * 3459 2748 3285 2048 * 5654 * 3140 4700 * 4474 3872 * 3527 18 0 * * * * * * 5014 0 0 M 19 3849 * 2016 2260 * * * * * 2566 5465 * * 2308 4800 4463 * * * * 19 0 * * * * * * 5014 0 0 A 20 5465 * * 2091 * * * 4442 2358 3165 3123 * * 5488 2244 5553 * 5587 * * 20 0 * * * * * * 5014 0 0 I 21 * * * * * * * 908 * 3925 3190 * * * * * 6174 1848 * * 21 0 * * * * * * 5014 0 0 N 22 2530 3925 2671 4901 * 3469 4096 5146 3280 * * 3858 * 3526 * 3548 5507 5196 * * 22 0 * * * * * * 5014 0 0 S 23 3046 * * 4721 * * 4019 * 2150 * * 3532 * 5553 1745 2758 * * * * 23 0 * * * * * * 5014 0 0 K 24 * * * * 5565 * * 4445 1627 4184 * * * 5146 1408 4999 * 3412 5378 * 24 0 * * * * * * 5014 0 0 I 25 * * * * 1787 * * 2464 * 1534 * * * * 4809 * * 3057 * 5161 25 364 3108 3225 0 * * * 5014 1749 0 S 26 4713 * * 4440 * 4794 * 5060 2739 5589 * 4312 * 3567 1471 2743 4864 * * * 26 273 * 2537 * * * 0 5014 0 2445 N 27 * * * * 3123 * 4700 3024 5865 1575 * 3661 * * 3412 3456 4869 3783 * * 27 173 * 3147 * * * 0 4742 0 3395 T 28 4977 2454 3212 * 4148 5238 * * 4852 3862 6018 * * 5012 * 2845 2283 3315 * * 28 73 * 4336 * * 2047 400 4594 0 3616 H 29 * * 2515 * * 1047 5110 * * * * 3780 * 5094 * 2799 3911 * * * 29 130 4139 5094 1000 1000 1570 593 4717 1590 3400 N 30 * * 5555 3578 3848 5160 * 4439 3070 3537 4623 2192 5443 6124 4630 3268 4899 5136 * 4526 30 38 * 5247 * * 1768 501 4734 0 3121 N 31 4328 * 5205 3826 * 5206 * 3037 4243 2976 * 4150 * 5650 5501 2008 4415 2943 * * 31 40 * 5177 * * 3505 133 4861 0 2637 N 32 3240 * 2495 * * 2871 5312 3194 5576 3658 * 2588 * * 4486 3683 5686 4746 * * 32 123 * 3610 * * 2027 406 4835 0 2790 I 33 4738 * 2131 3855 * 3007 * 2447 * 5196 5430 * 3127 * 4861 3237 5008 5584 * * 33 0 * * * * 876 1135 4868 0 3459 S 34 4181 * 3255 2633 * 2994 * 4834 3568 * 5215 3640 3518 * 6154 2654 4571 5345 * * 34 194 3955 4026 0 * 1963 427 4906 1624 2444 P 35 4323 6238 2946 3117 5708 1913 4807 5447 3360 * * 4668 5341 * 4951 4006 3433 * * * 35 45 5032 * 0 * * 0 4879 1179 2250 I 36 3370 * 3280 4126 * 4731 4242 3271 6005 4153 * 3803 4670 5439 4475 3709 2672 3947 * * 36 102 3874 * 1747 510 1328 733 4879 1876 2250 T 37 * * 5078 * 2480 * * 3083 * 1900 3569 * 5909 5818 * 4286 4157 2599 * 6140 37 33 5462 * 0 * 1422 674 4963 1000 1879 K 38 * * 2987 * * * 5941 * 2489 4280 * * * 2494 1670 4758 3985 4794 * * 38 0 * * * * 0 * 4860 0 1304 I 39 * * * * 4169 * * 2162 * 832 3813 * * * * * * 3506 * * 39 0 * * * * * * 3340 0 0 K 40 * * * * * * * * 772 3102 * 4617 * * 2213 * * * * 4588 40 0 * * * * * * 3340 0 0 Y 41 * * * * 4588 * 4588 * * * * * * * * * * 5522 * 160 41 0 * * * * * * 3340 0 0 Q 42 6228 * 5497 4567 * * * 4071 1781 1847 4150 * * 3630 3329 * * 4126 * * 42 0 * * * * * * 3340 0 0 D 43 4262 * 77 * * * * * * * * * * * * * * * * * 43 39 5244 * 0 * * * 3340 1000 0 E 44 6361 * 1385 1081 * * * 6005 * * * 4315 * 6004 * 4299 * * * * 44 0 * * * * * * 3340 0 0 D 45 * * 367 2443 * * * * * * * 4617 * * * * * * * * 45 0 * * * * * * 3340 0 0 G 46 * * 3636 4138 * 554 4094 * * 5182 * 4402 * 5404 * 5358 * * * * 46 0 * * * * * * 3340 0 0 D 47 * * 739 1633 * * * * * * * * * * * 4262 5244 * * * 47 0 * * * * * * 3340 0 0 F 48 5803 * * 4732 2778 * * * 5043 2908 5974 * * * 2969 4801 * * 1613 2958 48 0 * * * * * * 3340 0 0 V 49 * 5246 * * * * * 2595 * * 5208 * * * * * * 357 * * 49 0 * * * * * * 3340 0 0 V 50 4465 * * * * * * 5589 6234 2169 3264 6355 * 4732 3255 4015 2059 2859 * * 50 0 * * * * * * 3340 0 0 L 51 * * * * 4588 * * 1576 * 1011 3846 * * * * * * 4126 * * 51 0 * * * * * * 3340 0 0 G 52 2946 * 3979 3485 3755 5115 5960 * 4704 4585 * 3821 * 3862 * 3403 1974 5061 * * 52 0 * * * * * * 3339 0 0 S 53 * 1895 2576 6315 4704 4457 * * * * * 3728 * * 5999 1660 4070 * * * 53 0 * * * * * * 3339 0 0 D 54 * * 457 5388 * 5814 * * * * * 4070 * * * 2735 5646 * * * 54 0 * * * * * * 3339 0 0 E 55 2303 * 1892 2320 * 4337 * * * * * 5315 * 5654 * 2245 5493 * * * 55 0 * * * * * * 3339 0 0 D 56 4602 * 61 * * * * * * * * * * * * * * * * * 56 0 * * * * * * 3339 0 0 W 57 * * * * 4182 * * 3286 * 849 * * * * * * * 2941 2670 * 57 0 * * * * * * 3542 0 0 N 58 3005 * * 2552 5868 3753 6064 * * 3732 5375 3959 * 1997 * 3268 4593 4672 * * 58 0 * * * * * * 3539 0 0 V 59 3848 * * 1690 2930 4164 * 2953 * 3035 3518 * * * * * 4638 4182 * * 59 0 * * * * * * 3517 0 0 A 60 577 1812 * * * * * * * * * * * * * * * 4482 * * 60 31 * 5556 * * * * 3517 0 0 K 61 * * * * 1976 * * 3162 1754 3432 3994 * * * 5918 * * 2593 * * 61 0 * * * * * 0 4739 0 1000 E 62 * * 1348 1640 * * * * * 3793 3266 * * 4062 * 4311 * * * * 62 0 * * * * * 0 4739 0 1000 M 63 * * 5709 2821 * * 3295 2521 * 2781 2235 4995 * * * 4848 * 3247 * 4877 63 47 * 4973 * * 0 * 4810 0 1000 L 64 2520 4888 * * * * 4141 * * 1639 4273 * 5619 * * * * 3359 2530 3807 64 0 * * * * * 0 3639 0 1000 A 65 5222 * 3498 2494 * 3925 * * 2066 * * * * * 1571 5202 4685 * * * 65 0 * * * * * 0 3653 0 1000 E 66 4496 * 2907 1445 4793 * * * * 3788 * * * 5016 * 1876 5435 * * 5619 66 104 3843 * 1585 585 * 0 3567 1000 1000 N 67 * 5658 3832 3894 * * * 4941 4344 * * 3595 * 2937 * 946 5131 * * * 67 0 * * * * * 0 4446 0 1000 N 68 * * * 2913 * 1962 2952 * 5563 * * 2753 * 2651 4005 3468 * * * * 68 0 * * * * 0 * 4326 0 1000 E 69 * * * 2855 * * * 4948 * 2179 5487 3728 * 3025 3067 2410 3636 * * * 69 0 * * * * * * 4373 0 0 K 70 * * 4249 4253 * * 3849 * 1713 * * 3771 * 4699 1290 * * * * * 70 0 * * * * * * 4373 0 0 F 71 3814 * * * 3110 * * 1732 * * 3272 * * 4253 * 4422 2111 3680 * * 71 0 * * * * * * 4373 0 0 L 72 * * * * * * * 2121 * 629 * * * * * * * 3020 * * 72 0 * * * * * * 4373 0 0 N 73 * * * 3602 * * * 5250 1367 * * 2123 * * 1867 * * * * * 73 0 * * * * * * 4066 0 0 I 74 * * * * * * * 1146 * 1285 5015 * * * * * * 3227 * * 74 0 * * * * * * 4066 0 0 R 75 4074 * * * * * 2794 * 3247 4208 * * * 3188 3291 1723 3033 * * * 75 0 * * * * * * 3091 0 0 L 76 * * * * * * * 2317 * 1145 3682 * * * * * * 1894 * * 76 0 * * * * * * 3091 0 0 Y 77 * * * * 1644 * 1180 * * * * * * * * * * * * 2067 77 0 * * 0 * * * 2551 0 0 //