HHsearch 1.5 NAME d1ppjg_ FAM FILE d1ppjg_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1ppjg_.a3m DATE Fri Mar 12 23:19:32 2010 LENG 73 match states, 73 columns in multiple alignment FILT 36 out of 40 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.3 EVD 0.4310 0.4462 SEQ >ss_dssp CCTTSSCCCCSCCCCCCCGGGSCSSTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCC >sa_dssp EEEEEDEEEEEEEEEEEDEEEDEEEDDEEEECDDDDEEEDEDDDEEDCDEEEDEEEEECECDEDEDDEEEEEE >ss_pred CCCCHHEEEEEEEEEEECHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >ss_conf 9201003442257887461220223215753279999997750103643899999999999999998517896 >Consensus xxFGxLxKxrGiitYslSPxeQrxxagxxxxxixNxxRRxxxxxlyvxpPfixxYxxxxWaxxxxexxxrKnP >d1ppjg_ RQFGHLTRVRHVITYSLSPFEQRAFPHYFSKGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKSKRKNP >UniRef50_UPI000180CF36(11-82:89) PREDICTED: similar to GF10534 n=1 Tax=Ciona intestinalis RepID=UPI000180CF36 E=1e-08 s/c=0.85 id=40% cov=99% --FGHLgVKVNKQIIYTMSAFEQNPIKGVLRKGVPNMIRRTRESFFVIAIPALLAYMAYDWGVTAQAKLDRKDP >UniRef50_B2VRB1(33-94:105) Putative uncharacterized protein n=2 Tax=Pleosporineae RepID=B2VRB1_PYRTR E=0.0002 s/c=0.76 id=41% cov=84% ---------KGVVTYALSPNRQRPMATFIAKGFWNVVRRSRNQVLYFIPPLVVAYGTMQWAIErnEFLNSK---- >UniRef50_UPI0000DB6D79(4-74:81) PREDICTED: similar to CG7580-PA n=1 Tax=Apis mellifera RepID=UPI0000DB6D79 E=1e-17 s/c=1.28 id=39% cov=99% -KFGNLKKLSGVTFFRLSPYEQRAFAG-VGEATGKMLKRLRSTILTAGPFFLLSYVIMEWATEENHKMHRKNP >UniRef50_P50523(14-85:92) Cytochrome b-c1 complex subunit 8 n=1 Tax=Schizosaccharomyces pombe RepID=QCR8_SCHPO E=1e-16 s/c=1.22 id=39% cov=97% --WGHLGgpKQKGIITYSLSPFQQRPMAGFFKTSTQNMFRRVMTEGLYVAIPFGIAYYIYCWGKERNEFLNSKH- >UniRef50_Q54V76(2-71:73) Probable cytochrome b-c1 complex subunit 8 n=1 Tax=Dictyostelium discoideum RepID=QCR8_DICDI E=8e-12 s/c=1.02 id=30% cov=96% ---GQASKVFGkQITYSVSPFQQKLFVNYFKNAIPHLRRGVKDNFFCSVPYFAALYITVNWANETYHNEMKDH- >UniRef50_O45525(10-83:90) Protein F45H10.2, confirmed by transcript evidence n=5 Tax=Caenorhabditis RepID=O45525_CAEEL E=2e-09 s/c=0.86 id=24% cov=101% KHFGNLGKMYGEHRFALAPNEQKAYKGFFDQAFVKTFKtYVWDQWYYYIPQTIGAYLLYDWAKKTNVAANRKNP >UniRef50_A8P0G7(29-92:103) Predicted protein n=2 Tax=Agaricales RepID=A8P0G7_COPC7 E=1e-06 s/c=0.85 id=28% cov=78% -------RQKGITTYTISPYQTKTAPHWARNYLFNFYRRIGGELLFFGIPFALGYATYAWAKK---------- >UniRef50_Q4P7K0(29-91:101) Putative uncharacterized protein n=1 Tax=Ustilago maydis RepID=Q4P7K0_USTMA E=3e-06 s/c=0.84 id=24% cov=86% ---------RGIVQYSVSPFQQNAMKGALHSYIFYGFKRIMQQAPYFVLPFGFGYGLIAWAKGKNAYYNSK-- >UniRef50_A9VD05(4-75:82) Predicted protein (Fragment) n=1 Tax=Monosiga brevicollis RepID=A9VD05_MONBE E=5e-13 s/c=1.05 id=35% cov=99% --FGDLVKnSRGIVQFGLTPMRQQAVGNFFYKGPFNFVRRVAADGPVALPGILVLVGTIMWANNEFEARKRKNP # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * R 1 * * * * * * * * 1651 * * * * 1987 1220 * * * * * 1 0 * * * * * * 2034 0 0 Q 2 * * * 1112 * * 1542 * 2740 * * * * 4490 * * * * * * 2 0 * * * * * * 3238 0 0 F 3 * * * * 133 * * * * * * * * * * * * * 3504 * 3 0 * * * * * * 3725 0 0 G 4 * * * 3493 * 134 * * * * * * * * * * * * * * 4 58 * 4669 * * * * 3888 0 0 H 5 * * 3768 3994 * * 2031 * 3768 * * 1313 * 2805 * * * * * * 5 0 * * * * 0 * 3870 0 1000 L 6 3949 * * * 4669 * * 4554 * 229 * * * * * * * * * * 6 140 3435 * 0 * * * 3888 1538 0 T 7 2585 * * * * 2301 3712 5001 4359 * * * * * * 3949 2208 2972 * 3932 7 113 3735 * 1000 1000 * * 3888 1064 0 R 8 * * 5012 * * * * * 534 4979 * * * * 2228 * * * * 4905 8 134 3493 * 0 * * * 4328 1574 0 V 9 * * * 5158 * * * 2657 * 3087 2711 * * 2052 4905 4040 * 2268 * * 9 0 * * * * * * 4328 0 0 R 10 * * * * 4636 * 3759 * 1850 * * 4490 * * 1356 4690 * * 5249 3208 10 0 * * * * * * 4420 0 0 H 11 * * * * * 475 3367 * 4801 * * * * * 2761 * * * * * 11 54 4766 * 0 * * * 4387 1000 0 V 12 * * * 4449 * 3882 * 1303 * * * * * 2964 * * 5010 1635 * * 12 0 * * * * * * 4387 0 0 I 13 4880 * * * * * 4449 1627 4167 * * * * * * * 2155 1940 * 4171 13 0 * * * * * * 4387 0 0 T 14 * * * * 4827 * * 4801 4171 * * * * 3562 4449 3093 812 5325 * 5010 14 0 * * * * * * 4387 0 0 Y 15 * * * * 2392 * 4526 * * * * * * * * * 5353 * * 431 15 0 * * * * * * 4387 0 0 S 16 3026 * * * * 3288 * * 3881 * * * * * 3344 1329 2493 4925 * * 16 0 * * * * * * 4387 0 0 L 17 * * * * 3882 * * 3318 * 786 4278 * * * 4925 * * 2577 * * 17 0 * * * * * * 4387 0 0 S 18 2564 * * * * * * * * * * * * * * 364 4214 * * * 18 0 * * * * * * 4387 0 0 P 19 4801 * * * * * * * * * * * 243 * * 4913 * 3882 * 5794 19 0 * * * * * * 4387 0 0 F 20 * * * * 1431 * * * * 3882 3558 1841 * * * * * * * 2342 20 0 * * * * * * 4387 0 0 E 21 4722 * * 1140 * * * * * * * * * 2309 1706 * * * * * 21 0 * * * * * * 4387 0 0 Q 22 3882 * * * * * * * * 4139 * * * 254 * * 4759 * * * 22 0 * * * * * * 4387 0 0 R 23 * * * * * * * * 1550 * * 3053 * 4214 1265 3882 * * * * 23 0 * * * * * * 4387 0 0 A 24 1162 * * * * * 3882 * * 4202 * * 1635 * * * 4759 3798 * * 24 0 * * * * * * 4387 0 0 F 25 4759 * * * 1244 * * 4801 * 1989 2871 * * * * * * 4214 * 4000 25 0 * * * * * * 4387 0 0 P 26 1128 * * * * 4214 * * 2378 * * * 2339 4722 * 5389 * 4766 * * 26 0 * * * * * * 4387 0 0 H 27 * * * * * 676 3395 * * 3882 * 2540 * * * * 4677 * * * 27 52 * 4827 * * * * 4387 0 0 Y 28 2843 4886 * * 1825 * 3843 3610 * 3656 5279 * * * * * 5360 3537 4137 3052 28 0 * * * * 0 * 4343 0 1000 F 29 4053 * * * 1099 4963 * 4130 * 2107 * * * * * * * 4055 3449 * 29 0 * * * * * * 4387 0 0 S 30 4677 * 4449 * * 3279 2401 * 2310 * * * * * 3352 2299 3917 * * 4214 30 0 * * * * * * 4387 0 0 K 31 3254 * 3305 4827 * 5032 3402 * 1599 * * 2810 * 4449 * 4001 4246 * * * 31 0 * * * * * * 4387 0 0 G 32 1513 * * * * 1122 * * * * * * * * * 3904 * * * 3019 32 0 * * * * * * 4387 0 0 I 33 * * * * 2488 * * 1412 * 3879 5032 * 4214 * * * 3829 2164 * * 33 0 * * * * * * 4387 0 0 P 34 * * * * 1574 4827 * 4171 * 5756 * * 1397 4832 4981 5403 * 4449 4677 * 34 0 * * * * * * 4387 0 0 N 35 * * * * * * 4766 * 2872 * * 458 * * 3882 * * * * 5022 35 0 * * * * * * 4387 0 0 V 36 5756 * * * 3461 3082 * 5325 * 3163 3235 * * * * 3536 2858 1710 * * 36 0 * * * * * * 4387 0 0 L 37 4925 * * * 1492 * * 3326 * 2397 5486 * * * 3258 5315 * 3427 4641 4759 37 0 * * * * * * 4387 0 0 R 38 * * * * * * * * 2205 * * * * * 353 * * * * * 38 68 4449 * 0 * * * 4387 1000 0 R 39 * 5403 * * * 4766 3882 * * * * 4171 * * 437 * 4981 * * 4449 39 0 * * * * * * 4387 0 0 T 40 3346 4925 * * 2137 * * 2559 * 4827 * * * * * 4677 2304 2359 * * 40 0 * * * * * * 4387 0 0 R 41 3674 * * * * 4046 * * 2454 * 3458 * * 3882 1531 4580 * 5032 3303 * 41 0 * * * * * * 4387 0 0 A 42 2855 * 2969 3101 * 4759 4332 4171 5032 * * 4677 * 3493 5010 1995 4832 * * * 42 0 * * * * * * 4387 0 0 C 43 * 3568 3192 3382 * * 5032 * 5486 * * 2748 * 1413 * 3354 4827 * * * 43 0 * * * * * * 4387 0 0 I 44 3391 * * * 2565 3490 * 1996 * 4010 5032 * * * 4171 * 5403 2487 4449 * 44 0 * * * * * * 4387 0 0 L 45 * * * * 2365 * * * * 975 * * 2601 * * * * 5010 4171 4449 45 0 * * * * * * 4387 0 0 R 46 * 4766 * * 3879 3882 * 4616 5535 * * * * * 3318 * 4827 3478 * 889 46 0 * * * * * * 4387 0 0 V 47 3488 * * * 3227 * * 2118 * 3659 * * * * * 3893 * 1482 5422 4449 47 82 4171 * 0 * * * 4387 1000 0 A 48 1607 * * * * 3000 * 3558 * 2482 * * * * * * 5760 1919 * * 48 0 * * * * * * 4387 0 0 P 49 * * * * * * * 2265 * 5022 * * 575 * * 3882 5486 * * * 49 0 * * * * * * 4387 0 0 P 50 * * * * 4818 4230 * * * * * * 456 3037 * 5394 * * * 4766 50 0 * * * * * * 4390 0 0 F 51 3761 * * * 1063 4126 * 4230 * 2589 4144 * * * * 3903 4401 * * * 51 0 * * * * * * 4390 0 0 V 52 3377 * * * * 2877 * 1629 * 2480 * * * * * * * 1915 * * 52 0 * * * * * * 4390 0 0 A 53 3430 * * * 4109 3932 * 2768 * 2409 4455 * * * * 4991 5008 1554 * * 53 0 * * * * * * 4390 0 0 F 54 1948 * * * 2264 1945 * * * 3473 * * * * * 3910 4409 4991 * 4729 54 0 * * * * * * 4390 0 0 Y 55 * * 3903 * 4991 * * * * * * * * * * * * 4230 4729 303 55 0 * * * * * * 4390 0 0 L 56 3523 * * * 3515 2724 * 4015 * 1769 3647 * * * * 5793 * 3440 * 2957 56 0 * * * * * * 4390 0 0 V 57 3290 * * * * * * 1689 * 2775 4126 * * * * * 2398 2673 4729 * 57 0 * * * * * * 4390 0 0 Y 58 * * * * * * 3903 3189 * 4942 2335 * * * * * 4126 4766 3862 1218 58 0 * * * * * * 4390 0 0 T 59 3862 4803 1995 4042 * * 4991 5411 3396 4942 4230 3186 * 4639 * 4358 3030 * * 5218 59 0 * * * * * * 4390 0 0 W 60 * * * * * * * * * 4126 * 4729 * 4220 * * * * 269 5544 60 0 * * * * * * 4390 0 0 G 61 910 4126 * * * 1576 * * * * * * * * * 5544 * 4220 * * 61 0 * * * * * * 4390 0 0 T 62 * * 4942 3561 * * * 3358 2195 * * 1943 * * * * 2694 2716 * * 62 0 * * * * * * 4390 0 0 Q 63 * * * 1225 * 5007 4413 * 2308 * * 4230 5411 5917 2879 * 3990 * * * 63 60 4628 * 1000 1000 * * 4390 1430 0 E 64 3991 * * 1307 * * * * 3406 * 4105 * * * 2572 4879 3103 5415 * 4699 64 0 * * * * * * 4317 0 0 F 65 * * * * 2035 * 3019 * * * * 1364 * 3811 * * * * * 2532 65 0 * * * * * * 4317 0 0 E 66 3340 * 4918 1040 * * 2553 * 5206 4551 * * * * * * 4965 4361 * 4039 66 0 * * * * * * 4388 0 0 K 67 2821 * * 2973 3926 * * * 2450 * * 3326 5584 3850 2753 * * * * 2795 67 0 * * * * * * 4202 0 0 S 68 3141 4884 * 4220 4629 * * * * 1976 4545 * * * 4078 1764 * * * 3208 68 0 * * * * * * 4202 0 0 K 69 * * 4419 * * 4913 4533 5251 1568 5052 3534 1895 * 4608 * 5438 * * * 3966 69 0 * * * * * * 4208 0 0 R 70 * * * * * 3665 * * 3450 * * * * * 780 2016 * * * * 70 0 * * * * * * 4209 0 0 K 71 * * 4142 * * * * * 138 * * * * * 4843 * * * * * 71 0 * * * * * * 4209 0 0 N 72 * * 3887 * * * 2027 * 3575 * * 729 * * * * * * * * 72 0 * * * * * * 3798 0 0 P 73 * * * * * * * * * * * * 0 * * * * * * * 73 0 * * 0 * * * 3476 0 0 //