HHsearch 1.5 NAME d1ppjd2 FAM FILE d1ppjd2 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1ppjd2.a3m DATE Fri Mar 12 23:11:30 2010 LENG 46 match states, 46 columns in multiple alignment FILT 10 out of 14 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.6 EVD 0.4539 1.4018 SEQ >ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCC >sa_dssp EEDEEEEEECEEDEEDDEEDEDEEEDEDDEEDDEDEEEEEEEECEE >ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCC >ss_conf 9746898877999999999999999999761252112045621798 >Consensus PExDeRKxmgxKxlxixsxlxxlxxxxKRxKWsxiKsRKlvyxppx >d1ppjd2 PEHDHRKRMGLKMLLMMGLLLPLVYAMKRHKWSVLKSRKLAYRPPK >UniRef50_P07143(261-306:309) Cytochrome c1, heme protein, mitochondrial n=17 Tax=Fungi/Metazoa group RepID=CY1_YEAST E=1e-05 s/c=1.10 id=45% cov=102% PEHDERKRLGLKTVIILSSLYLLSIWVKKFKWAGIKTRKFVFNPPK >UniRef50_C4R673(242-287:288) Cytochrome c1, component of the mitochondrial respiratory chain n=22 Tax=Eukaryota RepID=C4R673_PICPG E=3e-05 s/c=1.07 id=43% cov=102% PEHDERKKMGLKAIIITSSLYLLAVWVKKFKWQPIKNRKIVWTPPR >UniRef50_C4JU96(614-658:663) Cytochrome c1 n=2 Tax=cellular organisms RepID=C4JU96_UNCRE E=1e-15 s/c=1.87 id=43% cov=100% PEMDDRKKMGLKTLVIAGTLFAISVWVRRYKWAPIKTRQIVYSPP- >UniRef50_B6K0T2(263-305:308) Cytochrome c1 n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K0T2_SCHJY E=7e-08 s/c=1.36 id=41% cov=96% PELDRRKKMGFQVLLTLSLMWSVTLWLKRFKWMPIKTRQLVYK--- >UniRef50_P08574(280-325:325) Cytochrome c1, heme protein, mitochondrial n=64 Tax=Eukaryota RepID=CY1_HUMAN E=1e-07 s/c=1.25 id=87% cov=102% PEHDHRKRMGLKMLMMMALLVPLVYTIKRHKWSVLKSRKLAYRPPK >UniRef50_Q9VAM8(265-308:344) CG14508 n=13 Tax=Endopterygota RepID=Q9VAM8_DROME E=5e-06 s/c=1.19 id=42% cov=98% PETDERRLLLIKVTLISTFLIGISYYIKRFKWSTLKSRKIFFIP-- >UniRef50_P25076(275-315:320) Cytochrome c1-1, heme protein, mitochondrial n=14 Tax=Embryophyta RepID=CY11_SOLTU E=9e-05 s/c=1.17 id=45% cov=91% PEMEERKLMGFKWIFVLSLALLQAAYYRRLRWSVLKSRKLV----- >UniRef50_C4PYA9(248-288:296) Cytochrome C1, putative n=1 Tax=Schistosoma mansoni RepID=C4PYA9_SCHMA E=0.0007 s/c=1.10 id=43% cov=91% --HDERKRILFKALVITSTLLVIMGIYKRKHWSDIKTRKLIYK--- >UniRef50_O59680(261-305:307) Cytochrome c1, heme protein, mitochondrial n=52 Tax=Eukaryota RepID=CY1_SCHPO E=7e-13 s/c=1.67 id=39% cov=100% PELDIRKKMGFQVITVLTILTALSMWYKRFKWTPIKNRKIFYQRP- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * P 1 * * * * * * * * * * * * 0 * * * * * * * 1 0 * * * * * * 2488 0 0 E 2 * * * 0 * * * * * * * * * * * * * * * * 2 0 * * * * * * 2488 0 0 H 3 * * * * * * 1130 * * 2265 2249 * * * * * 3004 * * * 3 0 * * * * * * 2633 0 0 D 4 * * 176 3126 * * * * * * * * * * * * * * * * 4 0 * * * * * * 2633 0 0 H 5 * * 3383 927 * * 2554 3358 * * * * * * 3178 * * * * * 5 0 * * * * * * 2633 0 0 R 6 * * * * * * * * * * * * * * 0 * * * * * 6 0 * * * * * * 2633 0 0 K 7 * * * * * * * * 192 * * * * * 3004 * * * * * 7 0 * * * * * * 2633 0 0 R 8 * * * * * * * * 1352 2063 * * * * 1438 * * * * * 8 0 * * * * * * 2633 0 0 M 9 * * * * * * * 3267 * 2187 564 * * * * * * * * * 9 0 * * * * * * 2633 0 0 G 10 * * * * * 374 * * * 2129 * * * * * * * * * * 10 0 * * * * * * 2633 0 0 L 11 * * * * 1229 * * 3004 * 1156 * * * * * * * * * * 11 0 * * * * * * 2633 0 0 K 12 * * * * * * * * 336 * * * * 2265 * * * * * * 12 0 * * * * * * 2633 0 0 M 13 2383 * * * * * * * * * 2554 * * * * * 2390 1588 3126 * 13 0 * * * * * * 2633 0 0 L 14 * * * * * * * 1737 * 1058 * * * * * * 3004 3397 * * 14 0 * * * * * * 2633 0 0 L 15 * * * * 3126 * * 2452 * 1655 3509 * * * * * 3358 2324 * * 15 0 * * * * * * 2633 0 0 M 16 * * * * * * * 979 * * 2554 * * * * * 3178 2237 * * 16 0 * * * * * * 2633 0 0 M 17 3383 * * * * * * * * 1260 2554 * * * * 3004 2383 * * * 17 0 * * * * * * 2633 0 0 G 18 3509 * * * * 2488 * * * * * * * * * 967 2170 * * * 18 0 * * * * * * 2633 0 0 L 19 * * * * 3004 * * 3358 * 1339 * * * * * 2452 2324 * * * 19 0 * * * * * * 2633 0 0 L 20 3126 * * * * * * * * 368 3178 * * * * * * * * * 20 0 * * * * * * 2633 0 0 L 21 * * * * 3383 * * 3004 * 1733 * * * * * * 3358 3509 3178 2452 21 0 * * * * * * 2633 0 0 P 22 2370 * * * * 3004 * * * 1750 * * 2554 * * 3178 * 3267 * * 22 0 * * * * * * 2633 0 0 L 23 * * * * * * * 1624 * 1150 * * * 3126 * * * 3178 * * 23 0 * * * * * * 2633 0 0 V 24 2305 * * * * * * * * * 3267 * * * * 1276 3178 2554 * * 24 0 * * * * * * 2633 0 0 Y 25 3126 * * * * 3267 * 3397 * 3178 3358 * * * * * * 2445 * 1762 25 0 * * * * * * 2633 0 0 A 26 3601 * * * * * * 3267 * * * * * * * * 3509 * 1039 2063 26 0 * * * * * * 2633 0 0 M 27 * * * * * * * 2234 * 3178 3601 * * * * * * 1844 * 1662 27 0 * * * * * * 2633 0 0 K 28 * * * * * * * * 341 * * * * * 2249 * * * * * 28 0 * * * * * * 2633 0 0 R 29 * * * * * * * * 2452 * * * * * 291 * * * * * 29 0 * * * * * * 2633 0 0 H 30 * * * * 956 * 2554 * 3267 3126 * * * * * * * * * 3383 30 0 * * * * * * 2633 0 0 K 31 * * * * * * 3267 * 356 * * * * * 3126 * * * * * 31 0 * * * * * * 2633 0 0 W 32 * * * * * * * * * * * * * * * * * * 0 * 32 0 * * * * * * 2633 0 0 S 33 2390 * * * * * * * * * 3178 * * 3510 * 962 3358 * * * 33 0 * * * * * * 2633 0 0 V 34 * * 3267 * * 3397 * * * * * * 1352 * * * 3004 1812 * * 34 0 * * * * * * 2633 0 0 L 35 * * * * * * * 760 * 1288 * * * * * * * * * * 35 0 * * * * * * 2633 0 0 K 36 * * * * * * * * 0 * * * * * * * * * * * 36 0 * * * * * * 2633 0 0 S 37 * * * * * * * * * * * 2432 * * * 1288 1304 * * * 37 0 * * * * * * 2633 0 0 R 38 * * * * * * * * * * * * * * 0 * * * * * 38 0 * * * * * * 2633 0 0 K 39 * * * * * * * * 333 * * * * 2277 * * * * * * 39 0 * * * * * * 2633 0 0 L 40 * * * * 3397 * * 1301 * 1002 * * * * * * * * * * 40 0 * * * * * * 2633 0 0 A 41 2554 * * * 2170 * * 3267 * * * * * * * * * 990 * * 41 0 * * * * * * 2633 0 0 Y 42 * * * * 2044 * * * * * * * * * * * * * 3350 601 42 0 * * * * * * 2645 0 0 R 43 * * * * * * * 2837 2013 * * 3285 * 3187 2400 3156 3350 * * * 43 0 * * * * * * 2645 0 0 P 44 * * * * * * * * * * * * 258 * 2608 * * * * * 44 0 * * * * * * 2278 0 0 P 45 * * * * * * * * * * * * 0 * * * * * * * 45 0 * * * * * * 2058 0 0 K 46 * * * * * * * * 454 * * * * * 1889 * * * * * 46 0 * * 0 * * * 1685 0 0 //