HHsearch 1.5 NAME d1pjwa_ FAM FILE d1pjwa_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1pjwa_.a3m DATE Mon Mar 8 18:24:51 2010 LENG 111 match states, 111 columns in multiple alignment FILT 14 out of 18 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.9 EVD 0.3848 -1.5711 SEQ >ss_dssp CCCCCCCSSCCCCCCCEEEEEEEEECSSSCEEEEEEECCTTCSCBCCEEEEETTCSSSCCBCCSSSCSBCCSSSTTSEEEEEECCCSSCEEEEEECSSSE EEEEECSCCCC >sa_dssp EEEEEEEDEEEECACCBDCDDECDEEEEDDCCBCACAEBEDCDBCACBEBBBBEDEEEEDBECDDEDBCBEEEEAEDECEBCADBDEDDBDBCBBCEEED CEDDDEEDEEE >ss_pred CCEEEEEEEEEECCCEEEEEECCCCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCCCEEEEEEECCCEEEECCCCCEEEEEECCCCCCCEEEECCCCCC EEHHHHCCCCC >ss_conf 9507744235551870799972334567479999997488886464689841567882463687127336513677607999638998639998347751 20224136899 >Consensus xkLxlKGxTYxmCxxxfxxxKxPxdTgHgTVvmeVxyxgsdxPCkIPvxxxxxxxxxxxxGrLITxNPxvxxxxanxxvxIExepPfGdSyIxVGxgxxx lxxxWxkxGSS >d1pjwa_ DKLALKGTTYGMCTEKFSFAKNPADTGHGTVVIELSYSGSDGPCKIPIVSVASLNDMTPVGRLVTVNPFVATSSANSKVLVEMEPPFGDSYIVVGMGDKQ INHHWHKAGST >UniRef50_Q91KY8(178-280:280) Envelope protein (Fragment) n=2 Tax=Aroa virus RepID=Q91KY8_9FLAV E=4e-29 s/c=1.24 id=52% cov=94% DKMVIKGVTYAQCTGSFKMEKSPADTGHGTVVLDISYQGSEAPCKVPIVITPNLAEIEPVGRLVSAHPVV--TGKNVRTMIEVEPPYGDSYIIIGTGDGK LKQHW------ >UniRef50_B5KM05(573-680:3418) Polyprotein (Fragment) n=1 Tax=Barkedji virus RepID=B5KM05_9FLAV E=6e-22 s/c=0.97 id=47% cov=98% EALKIKGLSFVTCGGTFSFSKQPSDTGHGTVIMEVTTTTSSVPCRL-LMGFEDASGKTIKGRLITVNPIVIT--ANTGVIVEMEPPFGESFITVGSGTTM IKYAWHRKGSS >UniRef50_Q04538(573-677:3415) Methyltransferase/RNA-directed RNA polymerase NS5 n=425 Tax=root RepID=POLG_POWVL E=1e-18 s/c=0.90 id=48% cov=95% EKLKLKGTTYSMCDKaKFKWKRVPVDSGHDTVVMEVSYTGSDKPCRIPVRAVAHGVPAVNVAMLITPNPTIET---NGGGFIEMQLPPGDNIIYVG---- DLSQQWFQKGST >UniRef50_P27914(290-397:1683) Serine protease/NTPase/helicase NS3 (Fragments) n=3 Tax=Flavivirus RepID=POLG_DEN2T E=2e-38 s/c=1.48 id=50% cov=98% DKLQLKGMSYSMCTGKFKIVKEIAETQHGTIVIRVQYEGDGSPCKIPF-EIMDLEKRHVLGRLITVNPIV--TEKDSPVNIEAEPPFGDSYIIIGVEPGQ LKLDWFKKGSS >UniRef50_B9TRQ0(585-692:3442) Polyprotein n=705 Tax=Flavivirus RepID=B9TRQ0_9FLAV E=8e-36 s/c=1.40 id=39% cov=98% ENLKIKGATYPVCPNTVVLTKEPVDTGHSTVVVEVKLSTFTMACRLAV-TFTDAAGTKITGRLITVNPII--TAADEKVTIEMEPPFGESFIEIGVTADS VKHHWNRKGSS >UniRef50_Q1X881(479-779:3412) Methyltransferase/RNA-directed RNA polymerase NS5 n=397 Tax=Flavivirus RepID=POLG_YEFVN E=2e-84 s/c=0.33 id=52% cov=98% SALTLKGTSYKMCTDKMSFVKNPTDTGHGTVVMQVKVP-KGAPCKIPVIVADDLTAAVNKGILVTVNPIASTN--DDEVLIEVNPPFGDSYIIVGTGDSR LTYQWHKEGSS >UniRef50_Q7T918(481-787:3425) Polyprotein n=3 Tax=Flavivirus RepID=Q7T918_9FLAV E=1e-121 s/c=0.45 id=39% cov=98% QGLTMKGSTYTMCKGGYSFSKTPVDSGHQTVIMKVKVSKAT-PCRIPVAVIDSMQSNINRGVVVTTNPVAF--EAATEVMIEVVPPFGESVITIGNGEDR LTYQWHQEGST >UniRef50_C1KC23(194-497:497) Envelope protein (Fragment) n=1 Tax=Chaoyang virus RepID=C1KC23_9FLAV E=1e-119 s/c=0.50 id=54% cov=98% GNMKLKGSTYVTCAQAFTFAKRPVDTGHGTVVFQVSYAGTDAPCKIPV-AVTDKPNGEHVGRLVTAHPFIAKQ--NEKAVVEVEPPFGDSYIEIGAGTTK ISEAWHKPGSS >UniRef50_Q9JAD5(456-752:3379) Polyprotein n=215 Tax=root RepID=Q9JAD5_9FLAV E=4e-96 s/c=0.45 id=42% cov=95% LNLRMKGLTYQMCSSSFVWHKRPVATQHGTVAMEVKYKGSDAPCRIPVSVEKEGYNGKNFGNLITANPFAANNEA--VVFLELEAPLGVSTIKVGGAV-- --FQWKQEGSS # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * D 1 * * 1531 1527 * 3857 * * * 3554 * * * 3524 * 3922 * * * * 1 0 * * * * * * 2905 0 0 K 2 2823 * * * * 3524 * * 915 * * 2051 * * * * * * * * 2 0 * * * * * * 2905 0 0 L 3 * * * * * * * * * 226 2783 * * * * * * * * * 3 0 * * * * * * 2905 0 0 A 4 4256 * * * * * * * 1265 * * * * 3736 2651 * 2178 3712 * * 4 0 * * * * * * 2905 0 0 L 5 * * * * * * * 2066 * 938 2064 * * * * * * * * * 5 0 * * * * * * 2905 0 0 K 6 * * * * * * * * 0 * * * * * * * * * * * 6 0 * * * * * * 2905 0 0 G 7 * * * * * 0 * * * * * * * * * * * * * * 7 0 * * * * * * 2905 0 0 T 8 3519 * * * * * * * * 2136 2202 * * * * 2681 2085 3712 * * 8 0 * * * * * * 2905 0 0 T 9 * * * * * * * * * * * * * * * 1479 641 * * * 9 0 * * * * * * 2905 0 0 Y 10 * * * * 3730 * * * * * * * * * * * * * * 113 10 0 * * * * * * 2905 0 0 G 11 2733 * * * * 3204 * * 3922 * * * 3519 3554 * 2875 2699 2235 * * 11 0 * * * * * * 2905 0 0 M 12 * * * * * * * * * 3754 860 * * 3712 * * 2792 2697 * * 12 0 * * * * * * 2905 0 0 C 13 * 0 * * * * * * * * * * * * * * * * * * 13 0 * * * * * * 2905 0 0 T 14 3857 * 2963 * * 3730 * * 3524 * * * 3519 * * 3554 1095 * * * 14 0 * * * * * * 2905 0 0 E 15 * * 3922 3204 * 1133 * * 2963 * * 3519 * 3857 * 3554 * * * * 15 198 2963 * 0 * * * 2905 1127 0 K 16 2805 * * * * 3524 * * 1404 * * * * * * 2123 2621 * * * 16 0 * * * * * * 2905 0 0 F 17 * * * * 396 * * * * * 3922 * * * * * * 3519 * 3524 17 0 * * * * * * 2905 0 0 S 18 * * * * * * * * 1833 * * * * * * 1833 1909 2536 * * 18 0 * * * * * * 2905 0 0 F 19 * * * * 1059 * * 3736 * 2686 3712 * * * * * * * 2228 * 19 0 * * * * * * 2905 0 0 A 20 2355 * * 2792 * * 3554 * 2963 * * * * * * 2195 3519 2826 * * 20 0 * * * * * * 2905 0 0 K 21 * * * * * * * * 326 * * * * * 2305 * * * * * 21 0 * * * * * * 2905 0 0 N 22 3900 * * 2118 * * * * * * * 2519 * 3730 2698 3712 2634 4029 * * 22 0 * * * * * * 2905 0 0 P 23 * * * * * * * 3736 * * * * 223 * * * * 3876 * * 23 0 * * * * * * 2905 0 0 A 24 1608 * * * * * * * * * * * * * * 2742 2911 1360 * * 24 0 * * * * * * 2905 0 0 D 25 3554 * 520 2202 * * * * * * * * * * * * * * * * 25 0 * * * * * * 2905 0 0 T 26 * * * * * * * * * * * * * * * 2216 350 * * * 26 0 * * * * * * 2905 0 0 G 27 * * * * * 520 * 3754 * * * * * 2131 * * * * * * 27 0 * * * * * * 2905 0 0 H 28 * * * * * * 0 * * * * * * * * * * * * * 28 0 * * * * * * 2905 0 0 G 29 * * 2963 * * 520 * * * * * * * 3524 * 3519 * * * * 29 0 * * * * * * 2905 0 0 T 30 * * * * * * * * * * * * * * * * 0 * * * 30 0 * * * * * * 2905 0 0 V 31 3754 * * * * * * 3736 * * * * * * * * * 233 * * 31 0 * * * * * * 2905 0 0 V 32 3554 * * * * * * 2623 * 3876 * * * * * * 3754 712 * * 32 0 * * * * * * 2905 0 0 I 33 * * * * 3857 * * 2973 * 2916 1179 * * * * * * 2124 * * 33 0 * * * * * * 2905 0 0 E 34 * * 3712 840 * * * * 3524 * * * * 2300 3736 * * * * * 34 0 * * * * * * 2905 0 0 L 35 * * * * * * * 3712 * 2453 * * * * * * * 432 * * 35 0 * * * * * * 2905 0 0 S 36 * * * * * 3900 * * 1346 * * * * 2284 * 1949 3730 * * * 36 0 * * * * * * 2905 0 0 Y 37 * * * * 3900 * * * * 3519 * * * * * * 3730 2709 * 696 37 0 * * * * * * 2905 0 0 S 38 2805 * * 2804 * * * * 3554 * * * 3922 3712 * 1768 2375 * * * 38 98 * 3922 * * * * 2905 0 0 G 39 * * * * * 454 * * 3365 * * * * * * * 2532 * * * 39 0 * * * * 0 * 2874 0 1000 S 40 3524 * 3736 3754 3519 * * * 3922 * * * * * * 1298 2292 * * * 40 100 * 3900 * * * * 2905 0 0 D 41 * * 965 3677 * 2764 * * * * * * * * * 3658 2450 * * * 41 139 * 3448 * * 0 * 2871 0 1000 G 42 1328 * * * * 2326 * * 3882 * 3377 * * * 3758 3639 * 3572 * * 42 0 * * * * 0 * 2801 0 1000 P 43 3519 * * * * * * * * * * * 132 * * * * * * * 43 0 * * * * * * 2905 0 0 C 44 * 0 * * * * * * * * * * * * * * * * * * 44 0 * * * * * * 2905 0 0 K 45 * * * * * * * * 897 * * * * * 1111 * * * * * 45 0 * * * * * * 2905 0 0 I 46 * * * * * * * 542 * 2621 * * * * * * * 2733 * * 46 113 * 3730 * * * * 2905 0 0 P 47 3310 * * * * * * * * * * * 153 * * * * * * * 47 0 * * * * 0 * 2850 0 1000 I 48 * * * * 2804 * * 1949 * 3730 * * * * * * * 936 * * 48 380 * 2112 * * * * 2905 0 0 V 49 3216 * * * * * * 3548 * * 3280 * * * 2650 1850 * 1904 * * 49 0 * * * * 0 * 2697 0 1818 S 50 2342 * * 3736 * 3730 * 2733 * * * * * * * 3204 2686 2071 * * 50 0 * * * * * * 2905 0 0 V 51 3922 * * 3554 2621 * * 2626 * * * * * 3876 * * 2733 1709 * * 51 0 * * * * * * 2905 0 0 A 52 2078 * 2178 3730 * * * * 3554 * 3736 * 3712 * * 3754 2678 * * * 52 0 * * * * * * 2905 0 0 S 53 * * 1162 2706 * * 2963 * * * * 3712 * * * 2355 * * * * 53 102 * 3876 * * * * 2905 0 0 L 54 2536 * * * * 2143 * * 3767 1488 3443 * * * * * 3660 * * * 54 0 * * * * * 0 2876 0 1000 N 55 2516 * * 3510 * * * * * * * 2353 3767 3443 * 3656 3826 2882 * 3462 55 0 * * * * 0 * 2876 0 1000 D 56 3922 * 3204 3712 * 2621 * * 2804 * * 2698 2963 * * 2634 * * * * 56 0 * * * * * * 2905 0 0 M 57 2974 * * 3900 * 2170 * 3712 3730 * 2453 3524 * * 3736 * 3519 * * * 57 0 * * * * * * 2905 0 0 T 58 3754 * * 2783 * * 3736 3524 2536 * * * * * * * 2443 1930 * * 58 0 * * * * * * 2905 0 0 P 59 * * * * * * 3857 2621 * * * 1449 2436 * * 3754 3876 3736 * * 59 0 * * * * * * 2905 0 0 V 60 * * * * 3554 * * * 2823 3736 * * * 3876 3524 * 2632 1388 * * 60 0 * * * * * * 2905 0 0 G 61 2963 * * * * 315 * * * * * 3876 * * * * * * * * 61 0 * * * * * * 2905 0 0 R 62 * * * * * * * 3922 * * 2963 3554 * * 658 * * 3524 * * 62 0 * * * * * * 2905 0 0 L 63 * * * * * * * * * 223 4154 * * * * * * 3524 * * 63 0 * * * * * * 2905 0 0 V 64 * * * * * * * 753 * * * * * * * * * 1298 * * 64 0 * * * * * * 2905 0 0 T 65 * * * * * * * * * * * * * * * 3712 114 * * * 65 0 * * * * * * 2905 0 0 V 66 1222 * * * * * * * * * * * 2963 * * * 3524 1490 * * 66 0 * * * * * * 2905 0 0 N 67 * * * * * * 2783 * * * * 226 * * * * * * * * 67 0 * * * * * * 2905 0 0 P 68 * * * * * * * * * * * * 0 * * * * * * * 68 0 * * * * * * 2905 0 0 F 69 * * * * 2276 * * 1428 * * * * * * * * 2963 2075 * 4154 69 0 * * * * * * 2905 0 0 V 70 2071 * * * * * * 2201 * * 3900 * * * * * * 1067 * * 70 528 * 1705 * * * * 2905 0 0 A 71 1385 * * 2512 3072 * * 3146 * * * * * * * 3371 3143 * * * 71 183 * 3072 * * * 0 2569 0 1987 T 72 * * * 2990 * * * * 3106 * * 2102 * * * 3444 1207 * * * 72 570 * 1616 * * 373 2133 2436 0 2260 S 73 * * * * * * * * * * * 2137 * 3384 * 1940 1265 * * * 73 322 * 2322 * * 1752 508 2571 0 1885 S 74 2907 * 3333 1432 * 2137 * * * * * * * * * 3605 3520 * * * 74 0 * * * * 2126 375 2652 0 2044 A 75 489 * * * * * * * 1798 * * * * * * * * * * * 75 183 * 3068 * * 0 * 2690 0 1840 N 76 3396 * 1994 3719 * * * * * * * 791 * * * * * * * * 76 0 * * * * * 0 2809 0 1000 S 77 4037 * 3771 2539 * 2809 * * 3719 * * * * * * 2196 2508 3624 * * 77 0 * * * * 0 * 2809 0 1000 K 78 * * * 2709 * 2296 * * 1561 * * * 2804 * 3712 * * 3554 * * 78 0 * * * * * * 2905 0 0 V 79 3857 * * * * 2963 * * * * 3754 * * * * * 3712 616 * * 79 0 * * * * * * 2905 0 0 L 80 * * * * 2228 * * 3730 * 2519 2075 2804 * * * * 3519 3857 * * 80 0 * * * * * * 2905 0 0 V 81 * * * * * * * 766 * 3554 * * * * * * * 1613 * * 81 0 * * * * * * 2905 0 0 E 82 * * * 0 * * * * * * * * * * * * * * * * 82 0 * * * * * * 2905 0 0 M 83 3736 * * * * * * 2940 * 3554 1543 * * * * * 3876 1746 * * 83 0 * * * * * * 2905 0 0 E 84 * * 3754 633 * * * * * * * 3922 * 2963 * * * 3524 * * 84 0 * * * * * * 2905 0 0 P 85 3554 * * * * * * * * 2963 * * 346 * * * * * * * 85 0 * * * * * * 2905 0 0 P 86 * * * * * * * * * * * * 0 * * * * * * * 86 0 * * * * * * 2905 0 0 F 87 * * * * 493 * * * * 3554 * * 2963 * * * * * * 3712 87 0 * * * * * * 2905 0 0 G 88 * * * * * 0 * * * * * * * * * * * * * * 88 0 * * * * * * 2905 0 0 D 89 * * 744 1654 * * * * * * * * * * * * * 3554 * * 89 0 * * * * * * 2905 0 0 S 90 * * * * * * * * * * * 2963 * * * 198 * * * * 90 0 * * * * * * 2905 0 0 Y 91 * * * * 2621 * * 2963 * * * * * * * * 3554 3524 * 897 91 0 * * * * * * 2905 0 0 I 92 * * * * * * * 0 * * * * * * * * * * * * 92 0 * * * * * * 2905 0 0 V 93 * * * 2678 * * * 1779 3554 * * * * * * * 2623 2501 * 2963 93 0 * * * * * * 2905 0 0 V 94 * * * * * * * 1342 * * * * * * * * * 724 * * 94 0 * * * * * * 2905 0 0 G 95 * * * * * 0 * * * * * * * * * * * * * * 95 198 * 2963 * * * * 2905 0 0 M 96 2674 * * * * 3302 * * * * 4028 3279 * * 3947 3536 2026 2466 * * 96 0 * * * * * 0 2776 0 1127 G 97 3302 * * 3591 * 479 * * * * * * * * * * 3350 * * * 97 0 * * * * * 0 2776 0 1127 D 98 3350 * 1799 2471 * * * * * * * * 3591 * * * 2001 3302 * * 98 154 * 3302 * * * 0 2776 0 1127 K 99 * * 2144 * * 2445 * * 2139 * * * * * * 3526 1855 * * * 99 0 * * * * 763 1284 2651 0 1470 Q 100 3719 * 2809 * * * * * 2078 * 3629 * * 2326 2571 3380 * * * * 100 0 * * * * * 0 2809 0 1000 I 101 * * * * * * * 1497 * 863 * * * * * * * 3380 * * 101 0 * * * * * 0 2809 0 1000 N 102 * * * * * * * * 1267 * * 2377 * * * 2798 2012 * * * 102 0 * * * * 0 * 2809 0 1000 H 103 * * * 3857 3554 * 1570 * * 3736 * * * 2282 * * * * * 2131 103 0 * * * * * * 2905 0 0 H 104 2792 3876 3736 * * * 1531 * * * * * * 1449 * * * * * * 104 0 * * * * * * 2905 0 0 W 105 * * * * * * * * * * * * * * * * * * 0 * 105 0 * * * * * * 2905 0 0 H 106 * * * * 1769 * 931 * 3478 * * 3437 * * * * * * * * 106 0 * * * * * * 2845 0 0 K 107 * * * * * * * * 1231 * * * * 1654 1964 * * * * * 107 0 * * * * * * 2845 0 0 A 108 2817 * * 1673 * * * * 1103 * * * 3661 * * * * * * * 108 0 * * * * * * 2845 0 0 G 109 * * * * * 0 * * * * * * * * * * * * * * 109 0 * * * * * * 2845 0 0 S 110 * * * * * * * * * * * * * * * 0 * * * * 110 0 * * * * * * 2845 0 0 T 111 * * * * * * * * * * * * * * * 349 2219 * * * 111 0 * * 0 * * * 2845 0 0 //