HHsearch 1.5 NAME d1p9ka_ FAM FILE d1p9ka_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1p9ka_.a3m DATE Mon Mar 8 21:13:35 2010 LENG 79 match states, 79 columns in multiple alignment FILT 110 out of 457 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.5 EVD 0.4042 -0.1902 SEQ >ss_dssp CCCCCSSCCCCEEECCSCSCCCHHHHHHHHTSCSSSSTTSHHHHHHHHEETTBCCCCSSCCCCSSEEEEETTEEEEEEC >sa_dssp EEEEEEEEEECDBEBDEEECBCACDAADECEBBEDAEEDECBEBAAEDDBDECEDEEEEBECDDDCCACBEEDDBDAEE >ss_pred CCHHHHHCCCCEEEECCCCCEEHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCCCCCCCCEEEECCEEEEEEC >ss_conf 9322331023104426887087667897607768889999998429399989995045878579998999999999839 >Consensus xxxxxxmxxxxxxxlxxxxxirLxxxLkxxgxxxSrxxAkxlIxxGxVxVNGxxvxxxxxkVxxgDxVxvxGxxixvva >d1p9ka_ GSMIHRMSNMATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVVA >UniRef50_D0J9Y2(1-70:255) Pseudouridine synthase n=1 Tax=Blattabacterium sp. (Periplaneta americana) str. BPLAN RepID=D0J9Y2_BLASP E=3e-12 s/c=1.04 id=21% cov=90% --MIMKMNQK---KIEEEKFIRLNHYLSNAGIT-SRREADKLIQSGLIEVNGKIVTKFGTVVHKNDVIKFHGSRIK--- >UniRef50_Q0AS26(10-63:372) Pseudouridine synthase n=1 Tax=Maricaulis maris MCS10 RepID=Q0AS26_MARMM E=4e-07 s/c=1.03 id=24% cov=48% ---------------------------------------ERMIEGGRVKVDGKTLDTPAFKVTGSEHIEVDGKRIE--- >UniRef50_Q0VQK2(14-67:248) Pseudouridine synthase n=2 Tax=Alcanivorax RepID=Q0VQK2_ALCBS E=6e-05 s/c=0.90 id=29% cov=48% ---------------------------------------RLLLAAGRVRVNGQVERDRQRRIGLFDAVVCDGEILQ--- >UniRef50_Q04CX3(3-74:77) S4-like RNA binding protein n=23 Tax=Lactobacillus RepID=Q04CX3_LACDB E=3e-14 s/c=1.11 id=29% cov=92% -----KVKTIETFAING-EFITLGQFLKDECIVSSGGQAKWYLKDSPVLVNGDKEDRRGRKLYPGDRLTVAGKEYELV- >UniRef50_Q3KL69(76-146:209) 30S ribosomal protein S4 n=17 Tax=Chlamydiales RepID=RS4_CHLTA E=3e-08 s/c=0.84 id=21% cov=86% --VVNKQGNVAQMFLEKFEC-RLDNIVYRLGFAKTIFAAQQLVSHGHVLVNGKKVDRRSFFVRPGMQISL--------- >UniRef50_B2KBB0(1-68:299) Pseudouridine synthase n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KBB0_ELUMP E=3e-07 s/c=0.82 id=25% cov=87% ------MSNKETLTFSGT-SARLDLFLSENKPDYSRGLIQNLIKQGKVTVNGK-ERKPAWPLAEGDNVEIEWPSVE--- >UniRef50_A5G345(16-73:98) RNA-binding S4 domain protein n=2 Tax=Acetobacteraceae RepID=A5G345_ACICJ E=5e-05 s/c=0.84 id=23% cov=54% ------------------------------------GVAARLVAAGGVRINRQITEKPHARLRPGDVLTLAlPQGVQVV- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 1000 0 0 S 2 * * * * * * * * * * * * * * * 0 * * * * 2 0 * * * * * * 1790 0 0 M 3 * * * 2220 * * * * * * 757 * * * * * * 2367 * * 3 0 * * * * * * 2824 0 0 I 4 2220 * * * * * * 1272 * * * * * * * 2495 * 2367 * * 4 0 * * * * * * 2824 0 0 H 5 * * * * * 2683 1474 * * * 2498 2730 * * 2675 * * * * * 5 0 * * * * * * 3056 0 0 R 6 * * * * * * * * 1204 * * * * * 821 * * * * * 6 0 * * * * * * 3311 0 0 M 7 * * * * * * * 3511 2744 * 716 * * 3729 * * * 3664 * * 7 0 * * * * * * 4223 0 0 S 8 * * * * * 3836 * * 1606 3937 * 2714 * * * 1695 3736 * * * 8 0 * * * * * * 4350 0 0 N 9 * * * 3666 * 2579 * * * * * 2119 * 2876 2669 2675 3763 * * * 9 0 * * * * * * 4350 0 0 M 10 * * * * * * 4002 4086 2865 3860 1869 * * 2974 * 3973 * 2266 * * 10 92 * 4016 * * * * 4477 0 0 A 11 2213 * * 2787 * * * 3916 * 4099 * 3596 * 3765 4008 2869 2648 * * * 11 0 * * * * * 0 4397 0 1000 T 12 3913 * 4099 * * 3424 3596 3891 3916 * * * * 4015 * * 989 * * * 12 0 * * * * * 0 4397 0 1000 F 13 * * * * 1146 * * 2954 * 3727 4096 3536 3951 * * * * 2897 * * 13 0 * * * * 0 * 4527 0 1000 S 14 3367 * 3177 2449 4200 * * * 3288 3867 * 3639 * * * 3007 3001 * * 4200 14 0 * * * * * * 4565 0 0 L 15 * * * * 4349 * * 2653 4482 1033 3050 * * 4425 * 4557 * 4361 * * 15 63 4548 * 0 * * * 4922 1000 0 G 16 * 4623 * 1608 * 3572 * 3376 4675 4059 4608 3703 3722 * 5125 3481 4644 * * * 16 0 * * * * * * 4985 0 0 K 17 4001 * * 2632 * 2016 * * 2365 * * 4826 * 4691 3316 3426 * 3892 * * 17 212 * 2873 * * * * 4957 0 0 H 18 4554 * 2841 2763 4702 4233 4430 * 3414 3365 * 4648 * 4851 2773 3694 4519 * * * 18 64 * 4519 * * 0 * 4821 0 2203 P 19 * * 2078 1156 * 4011 * * 5174 4253 4341 * 3562 * * * 4713 * * * 19 35 * 5389 * * 0 * 4940 0 1000 H 20 * 4957 * 2510 1776 5053 5019 * 4990 3948 * * 5022 * * 3000 5366 * * 2617 20 47 * 4957 * * 0 * 5043 0 1000 V 21 4762 * * * * * * 733 * 3301 3730 * * * 4485 * 5175 3156 * * 21 0 * * * * 0 * 5082 0 1000 E 22 5784 * 5705 4555 * * 4973 * 3537 * * * 5295 3719 1014 * 2283 * * * 22 0 * * * * * * 5101 0 0 L 23 * * * * * * * 2932 * 203 * * * * * * * * * * 23 0 * * * * * * 5276 0 0 C 24 5432 5710 1426 * * 2575 * 5487 5472 5271 * 2475 * 3573 * 3950 * * * 5765 24 0 * * * * * * 5276 0 0 D 25 4796 * 4121 5584 * * 5690 * 1834 5041 * 3655 * 1521 3861 * 4751 5530 * * 25 0 * * * * * * 5276 0 0 L 26 5963 * * * 2041 * * 3299 * 1417 * * * * * * 4196 4131 4091 3405 26 0 * * * * * * 5312 0 0 L 27 * * * * * * * 2955 * 377 5360 * * * * * * 3707 * * 27 0 * * * * * * 5312 0 0 K 28 2708 * * * 4519 5668 * * 1100 * * * 5306 * 5333 3139 5630 4460 4518 4497 28 0 * * * * * * 5312 0 0 L 29 3127 * 4223 3272 5468 * 4209 3581 3347 2713 5508 4739 * 4722 2508 * 5541 * 5452 * 29 0 * * * * * * 5346 0 0 E 30 2329 5956 * 3037 * * * 4656 * 2815 4369 5210 * 5890 3779 2519 3334 4555 * * 30 0 * * * * * * 5346 0 0 G 31 4674 5460 3979 * * 688 5414 * 4581 * * 3145 * * 4548 4917 * * * * 31 0 * * * * * * 5600 0 0 W 32 5642 * * * 1979 * * 2783 * 1800 * * 5472 * * * 5776 2853 5123 3540 32 43 * 5091 * * * * 5633 0 0 S 33 2305 2244 5612 5720 4032 * * 2630 * 4453 * * * * * 4236 4303 2513 * * 33 359 * 2182 * * 0 * 5707 0 1540 E 34 * * 3615 3230 * 3066 3415 5216 3657 * * 3799 3079 5575 5360 2966 * * * 2956 34 0 * * * * 0 * 5557 0 3357 S 35 * * 4237 * * * * * * * * 5505 * * * 446 2390 * * * 35 0 * * * * * * 5936 0 0 G 36 6020 5831 * * 6284 1694 * 4188 * * * * * * 851 5790 * 5793 * * 36 19 * 6273 * * * * 5936 0 0 A 37 3387 * * 5498 6369 1758 * * * 4866 * 4938 5469 * 2401 2285 5101 5126 * 4939 37 0 * * * * 0 * 5987 0 1000 Q 38 4095 * 6227 1787 * * * 5327 3315 3491 5066 * * 1796 4124 6698 * 5728 * 5616 38 0 * * * * * * 6323 0 0 A 39 519 5116 * * * * * 3448 * 5923 * * * * * 4759 4334 3665 * * 39 0 * * * * * * 6401 0 0 K 40 3893 * 4172 2876 * 5762 * * 1205 * * 6823 * 3267 2721 6072 * 6739 * * 40 0 * * * * * * 6597 0 0 I 41 3468 * 4418 3713 4722 5611 * 5947 2600 5389 5497 5268 * 2741 2570 4496 4237 6407 5367 5395 41 0 * * * * * * 6591 0 0 A 42 3708 * 6942 6721 2778 6347 * 3630 * 1390 3484 * * * 6862 6517 * 4098 3969 4208 42 0 * * * * * * 6616 0 0 I 43 5876 6174 * * * * * 666 * 2823 6358 * * * * * * 2433 * * 43 0 * * * * * * 6637 0 0 A 44 3006 * 5252 2636 6504 5823 * 4825 2608 3498 6296 5283 * 3295 3405 4003 4869 5650 * 5598 44 12 6968 * 1000 1000 * * 6637 1000 0 E 45 3099 * 2989 2353 * 4465 3116 * 3687 * 6793 4285 * 3355 5819 3306 4829 6464 * * 45 0 * * * * * * 6637 0 0 G 46 * * * 4816 * 483 4257 * 4021 * * 3916 * 5704 4964 5842 * * * * 46 0 * * * * * * 6637 0 0 Q 47 4711 6504 5392 4689 6129 4952 3747 5749 2972 3511 6366 4027 6482 3501 2177 5253 5032 5992 6365 4193 47 0 * * * * * * 6637 0 0 V 48 * * * * 5120 * * 2355 * 4442 * * * * * * * 454 * * 48 0 * * * * * * 6637 0 0 K 49 5030 6408 * 6352 3912 * 5775 6446 2571 2522 4803 5911 * 3930 2622 4327 2844 7153 6706 5591 49 0 * * * * * * 6637 0 0 V 50 * 5505 * 6621 6295 * * 3068 * 2685 * * * * 5639 * * 643 * 5665 50 0 * * * * * * 6637 0 0 D 51 6437 * 2677 * * 6455 5876 * * 6556 * 378 * * 6648 6222 * * * * 51 0 * * * * * * 6637 0 0 G 52 6813 * 4026 6257 6724 353 * * 5495 * * 3645 * 6705 6323 * * * * * 52 0 * * * * * * 6393 0 0 A 53 5310 * 5292 2217 * * * 4491 2075 4958 * 4803 * 2698 4367 5045 4457 3348 * 7014 53 12 * 6939 * * * * 6393 0 0 V 54 * * 5500 5860 6450 * * 2809 3463 3026 6380 5524 3607 4914 4006 5579 3584 1911 6404 * 54 12 * 6908 * * 0 * 6383 0 1000 E 55 3573 3696 6488 2569 * * 6332 2435 6617 4829 5290 * 5892 5415 * * 3972 1801 * * 55 54 * 4766 * * * 0 6376 0 1000 T 56 5156 * 3827 4310 5645 * 5471 * 3354 5830 * 3551 * 4722 3000 4127 1544 6656 * 4838 56 0 * * * * 0 * 6344 0 2481 R 57 5502 * 3154 3211 * 5069 5599 5208 2300 5172 * 3806 * 4329 2592 3935 4277 4817 * 6663 57 11 * 7041 * * * * 6373 0 0 K 58 2864 * * * 6405 4944 6233 * 3695 4137 5030 * 1423 6294 2432 3845 * * * * 58 0 * * * * 0 * 6386 0 1000 R 59 3462 * 3802 5182 6520 1662 6346 * 4773 * * 3203 * 5546 3547 2363 * * 6044 6780 59 0 * * * * * * 6389 0 0 C 60 3620 5865 * 4887 3053 * 4391 6349 3173 4436 5174 * * 5337 2806 6394 2712 4388 5352 3351 60 0 * * * * * * 6389 0 0 K 61 4512 * 5890 6390 6947 6622 5502 5728 1307 3885 4245 5465 5753 3239 3004 5557 4684 6420 * * 61 0 * * * * * * 6398 0 0 I 62 6043 5914 * * * * * 2149 * 1872 * * * * * * * 1091 * * 62 0 * * * * * * 6398 0 0 V 63 4845 6389 3831 5356 * 6445 4333 6932 2738 4326 * 4827 6288 4317 2055 3956 3239 5390 * 4146 63 13 6757 * 0 * * * 6370 1000 0 A 64 2815 6787 3745 3302 * 4059 6160 5386 3570 4314 * 4233 2356 * 5115 3790 5024 4057 * * 64 11 7068 * 0 * * * 6370 1000 0 G 65 6537 * 4174 5180 6443 760 5949 * 5764 5013 * 3152 * 5292 5933 5079 4624 6160 * * 65 56 4714 * 0 * * * 6375 2329 0 Q 66 4613 * 508 4211 * * * 5986 5841 * 5442 5416 * 3332 * 6244 6648 * * * 66 0 * * * * * * 6354 0 0 T 67 3658 * 4536 4444 4925 5841 6855 3509 4095 4535 5007 6943 * 4138 4205 5986 2664 1947 * * 67 0 * * * * * * 6354 0 0 V 68 * * * * 4556 * * 1384 * 3112 * * * * * * * 1124 * * 68 0 * * * * * * 6354 0 0 S 69 3807 * 5312 1695 * * 5552 6472 3951 6317 * * * * 4874 2530 2225 4586 6397 6631 69 0 * * * * * * 6274 0 0 F 70 * 4404 * * 2465 * * 2557 * 2146 * * * * * * * 1661 * 4068 70 0 * * * * * * 6281 0 0 A 71 3392 * 1700 3007 * 6269 5999 * 3577 5132 5992 3260 3755 5415 5013 4338 5641 * * 6197 71 90 4044 * 0 * * * 6195 2111 0 G 72 4735 * 3736 * * 554 * * * 6209 * 4313 3835 6092 6217 * 4996 * 6252 * 72 13 6798 * 0 * * * 6188 1000 0 H 73 6307 * 6239 1947 4846 * 4168 * 2025 5390 * 3967 4867 3181 3720 4355 * 5529 * * 73 29 5659 * 1000 1000 * * 6200 1000 0 S 74 6526 * 3222 4231 * 5755 4887 4056 3586 3630 * * 2614 4237 2879 3416 4661 3906 * * 74 0 * * * * * * 6031 0 0 V 75 * * * * 5521 * * 1430 * 2765 * * * * 5689 * * 1450 * 3744 75 0 * * * * * * 6018 0 0 Q 76 5117 * 4207 1925 * * 5688 * 3908 5327 * 4443 5115 2423 2658 5974 3224 * * * 76 0 * * * * * * 5818 0 0 V 77 * * * * * * * 1748 * 2376 * * * * * * * 1195 * 3776 77 0 * * * * * * 5521 0 0 V 78 3405 * * 4438 * * * 1819 4458 3381 * * * 4545 * * * 1352 * * 78 0 * * * * * * 5116 0 0 A 79 417 * * * * * * * * * * * * * * 1995 * * * * 79 0 * * 0 * * * 4050 0 0 //