HHsearch 1.5 NAME d1p6ra_ FAM FILE d1p6ra_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1p6ra_.a3m DATE Wed Mar 10 01:37:32 2010 LENG 82 match states, 82 columns in multiple alignment FILT 103 out of 366 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.5 EVD 0.4402 0.7947 SEQ >ss_dssp CCCCCCCCHHHHHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEESCSSSTTCCCCC >sa_dssp EEDCACADECACCAADCACECECBCBDDACDCACEECECEDEDADDBAEDADEBCAADCDEEEEDCCACCEBDECECEDEEE >ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEECCCCEEEEEEEECHHHHHHHHC >ss_conf 9755218999999999999589999899999721036988778999999999778656763587189898417999997419 >Consensus MxxxxxLtxxExxIMxxlWxxxxxtxxeixxxlxxxxxxxxsTvxtxLxrLxxKgxvxxxxxgrxxxYxpxixxeeyxxxes >d1p6ra_ MKKIPQISDAELEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHKEGRVFVYTPNIDESDYIEVKS >UniRef50_B5L5W9(20-100:147) Putative transcriptional repressor n=1 Tax=uncultured bacterium BLR5 RepID=B5L5W9_9BACT E=3e-07 s/c=0.70 id=22% cov=98% -KTLPAPTNTELSILTVLWHLGPGTVREILKRFNQDREAEagYTTILKMLQVMYEKGLVDRDNSQRPQVYRAVLLEEETQQQ-- >UniRef50_C3JAJ9(4-79:125) Putative transcriptional regulator n=2 Tax=Bacteria RepID=C3JAJ9_9PORP E=2e-05 s/c=0.66 id=17% cov=93% -TKLTPLTPQEESVMQIIWELGDgVAIRQILDKIPEPKP-PYTTLASIVKNLHTKEYIQPEKSGKTMLYGIEVTQEQY----- >UniRef50_C0GF11(12-92:144) Transcriptional repressor, CopY family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GF11_9FIRM E=4e-14 s/c=0.98 id=21% cov=98% MQGLNKiLGNLESEIMDIIWRKDcEVCVRDVFEDLAARRKIAYTTVMTIMGRLSDKKILEKRKQGNTSFFIPAMSRDEFTQ--- >UniRef50_B0MES9(1-84:125) Putative uncharacterized protein n=1 Tax=Anaerostipes caccae DSM 14662 RepID=B0MES9_9FIRM E=2e-09 s/c=0.76 id=21% cov=100% MRE-KDLTNREILIMKCAWgSEKELSVMEMQERLREEFGWdaKHSTLRTFLVDMEGKGFITLERRGRHSYIKVLSGEDEYKKTET >UniRef50_A6TUY1(1-78:121) Transcriptional repressor, CopY family n=18 Tax=Bacteria RepID=A6TUY1_ALKMQ E=1e-08 s/c=0.79 id=20% cov=96% MSKNLKLFDAEYRFTCIVWDNEPIQSRKLANICEQQLGWKRTTTYTVLRKLCERGIMQN----NNSIVTTLVTKEDVYQYES # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 46 * * * * * * 4990 * * 1 0 * * * * * * 5363 0 0 K 2 3452 * 3498 3370 * * * * 1925 * * 3289 * 5238 3448 2824 3731 5437 * * 2 60 4628 * 0 * * * 5881 1625 0 K 3 5746 * 4283 2702 * 5575 5946 * 1325 * * * 5723 2809 4075 3703 4568 * * * 3 112 * 3738 * * * * 6073 0 0 I 4 4674 * * 4712 * * 5300 2392 4819 1842 3294 5037 * 4280 4806 6099 4139 3567 5881 * 4 47 6117 5824 0 * 547 1663 6182 1000 2195 P 5 * * 4572 4410 * * * 4878 1923 4717 * 3783 1899 4244 4373 5615 4038 4797 * 5961 5 23 * 5978 * * 0 * 6274 0 1651 Q 6 2744 * 4898 4006 * 5201 4298 * 2054 6657 * 5348 4002 3052 2667 5277 4822 * * * 6 57 5370 6120 0 * 0 * 6416 1694 1000 I 7 * * * * 4776 * * 2474 * 577 4252 * 5576 * * * * 4645 * * 7 33 6484 6468 2000 415 * 0 6517 1000 1000 S 8 6455 * * * 5616 3284 6105 * * * * * 3210 * 6071 1517 1401 * * * 8 30 6486 6684 1585 585 981 1019 6482 1000 1790 D 9 4186 * 2105 2238 * 5511 5446 * 2601 * 6419 3690 2992 6496 4500 6538 6650 * * * 9 0 * * * * * 0 6492 0 1809 A 10 2013 * 5293 * 5677 3843 * * 5263 2468 * * 5150 4514 3166 2847 3971 4485 * * 10 0 * * * * 0 * 6492 0 1809 E 11 * * * 112 * * * * * * * * * 3741 * * * * * * 11 0 * * * * * * 6621 0 0 L 12 3593 * * 3750 4727 * 6920 4430 4641 1778 3770 6230 * 4741 3741 5768 6392 * 2922 4115 12 0 * * * * * * 6625 0 0 E 13 3499 * 3710 1496 5321 * * 6392 4233 4107 6233 6236 * 3380 3521 4178 4918 5436 * 6460 13 0 * * * * * * 6625 0 0 V 14 * * * * 4517 * * 1166 * 3117 * * * * * * 6230 1388 * * 14 0 * * * * * * 6625 0 0 M 15 6799 * * * 6203 * * 6657 * 1912 628 * * * * * 5697 5389 * 6426 15 0 * * * * * * 6625 0 0 K 16 5400 5698 3661 1998 * * 6505 6674 2334 4036 5795 3529 * 3964 3025 4842 5562 * * * 16 18 6333 * 2322 322 * * 6635 1000 0 V 17 2944 4725 6337 5618 3795 * 5738 2151 6466 3855 6434 * * 6756 6939 5735 5081 1947 * 3910 17 0 * * * * * * 6635 0 0 I 18 5107 * * * 4302 * * 1845 6333 1166 5562 * * * * * * 2619 * * 18 14 6665 * 0 * * * 6635 1000 0 W 19 * 6212 6432 6808 6960 6665 * 5960 5529 * * * * * 5604 5428 6669 6445 264 6291 19 56 4718 * 0 * * * 6635 2136 0 K 20 2998 * 2805 2367 * 5654 6805 * 3369 * 6599 4066 * 3900 3092 3078 4660 * * * 20 46 5000 * 0 * * * 6635 2142 0 H 21 4239 5177 4659 4275 6337 * 3702 5088 2671 2504 * 3185 * 4173 3819 3786 6938 4674 * 5636 21 66 4475 * 283 2487 * * 6635 2732 0 S 22 5790 * 3324 2826 * 1550 6809 * 2938 * * 6291 2961 5645 5059 4372 5594 * * * 22 180 3183 7077 330 2289 * * 6635 4129 0 S 23 5467 * 3602 2221 6753 3760 5376 6699 3989 * * 6213 1553 5554 6696 3407 6859 6295 * * 23 103 3853 * 354 2199 * 0 6638 3470 1000 I 24 2277 4711 6665 * 6213 3861 * 2751 * 2585 4859 * 6320 4283 5553 4999 4737 2646 * * 24 35 5399 * 0 * * 0 6638 2150 1000 N 25 4226 6785 5487 * 7098 * * 6356 5711 5469 6603 4584 3993 5693 6654 2092 1148 5369 * * 25 13 * 6753 * * * 0 6638 0 1000 T 26 1721 6637 * * 4998 * * 3996 * 4550 4872 * 4844 6544 5848 2583 5163 2019 * 6459 26 19 6228 * 0 * 1000 1000 6628 1000 1561 N 27 3097 * * 5437 6647 3918 * * 2715 6585 5334 3814 5351 5749 1913 3033 4310 5629 * 5384 27 0 * * * * * 0 6626 0 1000 E 28 5183 * 2148 1161 6686 5408 6670 * 5089 5654 6860 6816 * 3492 5559 6394 4314 * 6647 7060 28 18 * 6357 * * * 0 6626 0 1000 V 29 4995 6524 6400 * * * * 1336 * 2387 5995 * * * * * * 1544 * * 29 29 6955 6433 0 * 1023 978 6618 1000 1610 I 30 3201 5670 * 5978 4689 * 3249 2563 5097 3151 4811 * * 3888 3986 4922 4757 2991 * 4687 30 62 6613 4964 1000 1000 * 0 6617 1000 1659 K 31 3398 6764 2666 1691 * 5310 5509 6922 3063 4883 6760 4339 * 3941 5877 4229 * 5297 * * 31 0 * * * * 1234 798 6600 0 2915 E 32 2425 * 4947 3085 * 4439 3968 3865 3736 4129 6320 6350 * 4146 3067 4735 5783 4502 * 4261 32 34 * 5443 * * * 0 6574 0 2190 L 33 4163 5736 * * 3098 * 5647 3302 6351 1191 3256 * * * * * 5453 3191 * * 33 66 4848 6637 905 1102 0 * 6581 2361 2888 S 34 4187 5792 5019 3186 * 3704 4587 6351 3017 5523 * 3319 3233 4806 4001 2809 5686 6567 * 4921 34 101 4679 5114 620 1517 * 0 6628 2429 1000 K 35 3846 * 3508 1852 * 4133 6081 6879 2993 5491 * 5506 5914 2755 3596 6625 4822 5468 * * 35 96 4882 5038 703 1375 1848 469 6596 2132 2621 T 36 5339 * 3360 2914 * 3061 * 4709 3230 5666 * 4863 3566 3676 3570 3474 4830 5076 * 5339 36 84 4863 5492 634 1492 2387 306 6583 2540 2917 S 37 6207 * 5394 5604 4328 * 3627 6200 2345 4715 4881 4330 4774 5731 2126 5083 3860 4610 6665 4455 37 59 7242 4899 0 * 875 1136 6544 1000 3307 T 38 5593 * 2578 2593 6116 2169 5958 * 3700 * * 4371 3185 5135 * 3944 3956 * * * 38 118 5406 4187 0 * 1533 612 6533 1619 3264 W 39 5091 * * * * 5341 6487 3012 * 2337 6198 * * 6331 4037 5326 * 3949 1263 5669 39 25 5854 * 1000 1000 812 1216 6566 1000 3793 S 40 2179 * 4970 4471 * 5079 5218 6449 2138 * * 4802 4405 6750 5314 2145 4613 6112 * 6926 40 29 5644 * 604 1547 * 0 6635 1605 2507 P 41 4410 * 4170 5402 5679 * 4503 4843 3378 4518 * 5715 2823 5388 2966 6910 * 5870 * 1747 41 44 5539 6900 1566 594 1025 975 6635 1655 2507 K 42 3527 * * * * 4000 * * 4638 6337 * 2720 5233 4436 6697 1685 2053 * * 6362 42 15 6588 * 1000 1000 645 1471 6610 1000 2129 T 43 5221 * * * * 6632 * * 6425 6543 * * * * * 3358 270 6189 * * 43 18 6323 * 1000 1000 0 * 6633 1000 1000 I 44 4555 * * * * * * 1733 6359 3860 5765 * * * * * 2868 1251 * * 44 0 * * * * * * 6635 0 0 Q 45 3805 * * 5440 * 5745 5016 4485 2635 2620 4446 6669 * 3373 2745 3276 5612 6354 * 4317 45 0 * * * * * * 6635 0 0 T 46 3873 6756 * 5439 * 6593 * 5272 3501 5392 * 5587 6398 6389 4798 3039 866 * * * 46 0 * * * * * * 6635 0 0 M 47 6661 6192 * * 3499 * * 3566 6669 1858 3114 * * * 6434 * 3226 2413 * 3377 47 0 * * * * * * 6635 0 0 L 48 * * * * * * * 2752 * 638 3529 * * * * * 6599 3160 * * 48 0 * * * * * * 6635 0 0 L 49 3793 * 3683 3829 5731 4684 6233 * 3167 6023 * 2771 * 4170 3337 2932 3615 5342 * 4521 49 0 * * * * * * 6635 0 0 R 50 6881 * 5444 * 6785 5482 5360 4142 3261 * * 4363 * * 647 4449 * 5731 * * 50 0 * * * * * * 6635 0 0 L 51 * * * * * * * 5396 * 259 2833 * * * * * * * * * 51 0 * * * * * * 6635 0 0 I 52 4079 4512 * 2086 6337 * 4511 4056 5599 3601 * * * 5363 4519 4292 4402 2122 * 4442 52 0 * * * * * * 6635 0 0 K 53 3691 * 2740 1807 * 5398 5962 * 2465 6395 * 4552 * 3988 3686 4782 4850 * * * 53 0 * * * * * * 6635 0 0 K 54 * * * * * * 6574 * 223 * 5314 5084 * 6946 4405 * 6398 * * 6505 54 15 6594 * 1585 585 * * 6635 1000 0 G 55 6337 * 5275 4571 * 582 4774 * 4031 6680 * 4049 * 4643 5338 6775 6672 * * * 55 0 * * * * * * 6635 0 0 A 56 2789 * * * 2496 * 5813 3652 * 2445 4687 * * * * 5501 5475 3970 3901 2451 56 0 * * * * * * 6635 0 0 L 57 5604 * * * * * * 2362 6594 1387 5698 * * * * * * 1423 * * 57 11 7056 * 0 * * * 6635 1000 0 N 58 5205 * 3784 2657 * 5977 5763 * 2797 5757 * 5337 * 3010 3962 3315 2199 * * 6192 58 17 6389 * 2322 322 * * 6635 1000 0 H 59 4541 5962 5989 6594 4302 6792 3818 * 3179 6005 6395 4934 6608 6089 1721 4388 4485 2507 * 5871 59 42 6756 5698 0 * * * 6635 1000 0 H 60 3907 6563 3452 2390 5870 5859 4746 5614 2490 6547 * 4694 * 3906 2989 4408 4554 5172 * 6492 60 64 4973 6424 2211 351 * 0 6579 2087 1000 K 61 4578 * 4363 4895 * 3460 * * 1534 6736 * 5063 5936 4209 2217 6748 4202 4284 * * 61 12 6916 * 0 * 945 1057 6568 1000 1746 E 62 4449 6705 2900 2992 4702 4498 * 3387 3976 4624 * 4563 6193 3966 4079 2840 6182 3836 * * 62 0 * * * * * 0 6579 0 1000 G 63 5551 * 5292 5547 * 659 4710 * 3878 * * * 6171 5060 5176 3737 4979 6150 * * 63 29 7364 6190 2000 415 0 * 6555 1000 1000 R 64 * * 6199 * 5373 3493 5496 5608 2269 6350 6285 3302 * 6668 1282 5281 5335 * * 5307 64 50 4883 * 2322 322 * 0 6601 2003 1000 V 65 2678 4814 5769 4911 * 4989 5145 5527 3231 4142 5840 4613 3844 4305 4458 3786 2556 4842 * 6567 65 23 5994 * 2322 322 0 * 6601 1398 1000 F 66 5501 * 6732 * 2227 6679 3958 4920 4512 5529 4898 3575 * 5168 2900 4202 4751 6653 * 2310 66 0 * * * * * * 6611 0 0 V 67 5980 * * 4902 4306 * 4902 2803 4676 2368 * * * 4256 3614 4775 3627 2616 * 3717 67 0 * * * * * * 6611 0 0 Y 68 * 6239 * * 2699 * * 5221 * * * * * * * * * 4207 5709 449 68 0 * * * * * * 6614 0 0 T 69 4025 * 6642 3555 4488 6547 5122 6768 4177 5720 6530 * * 4998 2630 2287 2758 4471 * 3745 69 0 * * * * * * 6618 0 0 P 70 1846 * * * * * * 3927 * * * * 955 * * 4562 4638 4111 * * 70 21 * 6108 * * * * 6529 0 0 N 71 2705 * 6566 6518 * * * 4387 4732 1819 5184 4185 * * 3837 4850 2790 3005 * * 71 0 * * * * 0 * 6507 0 1000 I 72 4846 6613 6826 * 5516 6056 * 1605 6565 3177 4134 * * 5577 * 5786 6257 1557 * 6571 72 0 * * * * * * 6499 0 0 D 73 3754 * 4265 4324 * 4638 7063 * 3210 6556 * 4628 4999 4742 6455 1850 1944 * * * 73 0 * * * * * * 6467 0 0 E 74 * * * 2114 * * 5644 * 2434 * * * 4427 2769 1544 5862 * * * 6546 74 0 * * * * * * 6510 0 0 S 75 4557 * 2424 1235 * 5984 5990 6670 3332 * * 6554 * 4184 3879 4612 5739 6322 * * 75 0 * * * * * * 6467 0 0 D 76 4165 * 1871 1065 * * * * 4821 * 6165 6331 * 3495 * 5191 6040 * * * 76 0 * * * * * * 6279 0 0 Y 77 2357 4276 * * 2718 * 5142 * * 5622 * * * * * * 5686 4451 * 1036 77 0 * * * * * * 6173 0 0 I 78 4880 * * 5409 * 5482 5284 2669 4483 2212 4154 * * 3632 3699 5829 4043 2918 * 4256 78 0 * * * * * * 5975 0 0 E 79 3450 * 4160 2254 * 4371 * * 2670 4025 * 4259 * 2095 3954 5310 * * * * 79 0 * * * * * * 5843 0 0 V 80 2855 * * 5305 2989 5426 5478 3447 4941 5175 3411 5061 * 3573 5443 4436 3239 3979 * 3914 80 0 * * * * * * 5745 0 0 K 81 * * 5157 760 * * * * 5184 * 4921 * * 2188 4919 * * 3869 * * 81 0 * * * * * * 5392 0 0 S 82 2480 * * * * * * * * * * * * * * 1326 1245 * * * 82 0 * * 0 * * * 5127 0 0 //