HHsearch 1.5 NAME d1ok8a1 FAM FILE d1ok8a1 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1ok8a1.a3m DATE Mon Mar 8 18:22:31 2010 LENG 97 match states, 97 columns in multiple alignment FILT 15 out of 19 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.0 EVD 0.3887 -1.3308 SEQ >ss_dssp CCCBCCSCEEEEEEEEECTTSCEEEEEEECSSSCSEECCEEEEESSSCBCSSCBSSCSCEECSTTCCEEEEECCCSEEEEEEESCSTTCEEEEEEEC >sa_dssp EDEDBECDBDCDEEBDECEEEBBCBCACACCEECDBDABCCABCEDEEECEEDCDCEEBCBEEDDCDCDACBDACECDBCABABDEEDCCDBECECE >ss_pred CCEECCCEEEEEECCCCCCCCEEEEEEEECCCCCCEEEEEEEEECCCCCEEEEEEECCCEEECCCCEEEEEECCCCCCCEEEECCCCCCEEHHCCCC >ss_conf 9435254179997002456757999999647888626679998058862576897148438706870799963899863999844675120110379 >Consensus TYxmCxxxfxxxKxPxdTgHgTVvmeVxyxgxdxPCrIPvxvxdxxxxxxxgrLITxNPxvtxxnxxvxIExepPfGdSxIxVGxgxxxlxxxWxkk >d1ok8a1 SYSMCTGKFKVVKEIAETQHGTIVIRVQYEGDGSPCKIPFEIMDLEKRHVLGRLITVNPIVTEKDSPVNIEAEPPFGDSYIIIGVEPGQLKLNWFKK >UniRef50_B5KM05(581-677:3418) Polyprotein (Fragment) n=1 Tax=Barkedji virus RepID=B5KM05_9FLAV E=1e-14 s/c=0.83 id=37% cov=101% SFVTCGGTFSFSKQPSDTGHGTVIMEVTTTTSSVPCRLLMGFEDASGKTIKGRLITVNPIVITANTGVIVEMEPPFGESFITVGSGTTMIKYAWHRK >UniRef50_Q7T918(589-685:3425) Polyprotein n=3 Tax=Flavivirus RepID=Q7T918_9FLAV E=5e-32 s/c=1.42 id=32% cov=100% TYTMCKGGYSFSKTPVDSGHQTVIMKVKVS-KATPCRIPVAVIDSMQSNInRGVVVTTNPVAFEAATEVMIEVVPPFGESVITIGNGEDRLTYQWHQE >UniRef50_Q9JAD5(562-655:3379) Polyprotein n=215 Tax=root RepID=Q9JAD5_9FLAV E=5e-27 s/c=1.30 id=34% cov=97% TYQMCSSSFVWHKRPVATQHGTVAMEVKYKGSDAPCRIPVSVEKEGyNGKNFGNLITANPFAANNEAVVFLELEAPLGVSTIKVGGAV----FQWKQE >UniRef50_Q1X881(581-677:3412) Methyltransferase/RNA-directed RNA polymerase NS5 n=397 Tax=Flavivirus RepID=POLG_YEFVN E=7e-34 s/c=1.48 id=47% cov=100% SYKMCTDKMSFVKNPTDTGHGTVVMQVKVP-KGAPCKIPVIVAdDLTAAVNKGILVTVNPIASTNDDEVLIEVNPPFGDSYIIVGTGDSRLTYQWHKE >UniRef50_Q91KY8(186-280:280) Envelope protein (Fragment) n=2 Tax=Aroa virus RepID=Q91KY8_9FLAV E=1e-33 s/c=1.52 id=47% cov=98% TYAQCTGSFKMEKSPADTGHGTVVLDISYQGSEAPCKVPIVITpNLAEIEPVGRLVSAHPVVTGKNVRTMIEVEPPYGDSYIIIGTGDGKLKQHW--- >UniRef50_Q04538(581-674:3415) Methyltransferase/RNA-directed RNA polymerase NS5 n=425 Tax=root RepID=POLG_POWVL E=1e-29 s/c=1.38 id=38% cov=96% TYSMCdKAKFKWKRVPVDSGHDTVVMEVSYTGSDKPCRIPVRAVAHGVPAVnVAMLITPNPTI-ETNGGGFIEMQLPPGDNIIYVG----DLSQQWFQK >UniRef50_C1KC23(202-494:497) Envelope protein (Fragment) n=1 Tax=Chaoyang virus RepID=C1KC23_9FLAV E=1e-118 s/c=0.49 id=38% cov=101% TYVTCAQAFTFAKRPVDTGHGTVVFQVSYAGTDAPCKIPVAVTDKPNGEHVGRLVTAHPFIAKQNEKAVVEVEPPFGDSYIEIGAGTTKISEAWHKP >UniRef50_P05769(495-792:3434) Methyltransferase/RNA-directed RNA polymerase NS5 n=2839 Tax=Flavivirus RepID=POLG_MVEV5 E=1e-124 s/c=0.48 id=44% cov=101% TYGMCTEKFTFSKNPADTGHGTVVLELQYTGSDGPCKIPIsSVASLNDMTPVGRMVTANPYVasSTANAKVLVEIEPPFGDSYIVVGRGDKQINHHWHKE >UniRef50_B9TRQ0(593-689:3442) Polyprotein n=705 Tax=Flavivirus RepID=B9TRQ0_9FLAV E=1e-33 s/c=1.32 id=39% cov=101% TYPVCPNTVVLTKEPVDTGHSTVVVEVKLSTFTMACRLAVTFTDAAGTKITGRLITVNPIITAADEKVTIEMEPPFGESFIEIGVTADSVKHHWNRK # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 * * * * * * * * * * * * * * * 1476 643 * * * 1 0 * * * * * * 3048 0 0 Y 2 * * * * 3655 * * * * * * * * * * * * * * 119 2 0 * * * * * * 3048 0 0 S 3 2748 * * * * 4074 * * 4018 * * * 3492 3547 * 2592 2512 2222 * * 3 0 * * * * * * 3048 0 0 M 4 * * * * * * * * * 3749 940 * * 3747 * * 2779 2441 * * 4 0 * * * * * * 3048 0 0 C 5 * 0 * * * * * * * * * * * * * * * * * * 5 297 2427 * 0 * * * 3048 1216 0 T 6 3916 * * * * 3655 * * 1911 * * * 3492 * * 3547 1273 * * * 6 0 * * * * * * 3048 0 0 G 7 3463 * 4018 4074 * 1145 * * * * * 3492 * 3916 * 3547 3391 * * * 7 0 * * * * * * 3048 0 0 K 8 2830 * * * * 3644 * * 1387 * * * * * * 2128 2571 * * * 8 0 * * * * * * 3048 0 0 F 9 * * * * 378 * * * * * 4018 * * * * * * 3492 * 3644 9 0 * * * * * * 3048 0 0 K 10 * * * * * * * * 1694 * * * * * * 2177 1759 2519 * * 10 0 * * * * * * 3048 0 0 V 11 * * * * 1247 * * * * 2666 3747 * * * * * * 3732 1881 * 11 0 * * * * * * 3048 0 0 V 12 2830 * * 2804 * * 3547 * 2427 * * * * * * 2192 3492 2868 * * 12 0 * * * * * * 3048 0 0 K 13 * * * * * * * * 435 * * * * * 1941 * * * * * 13 0 * * * * * * 3048 0 0 E 14 3391 * * 2103 * * * * * * * 3046 * 3655 2720 3747 2695 3463 * * 14 0 * * * * * * 3048 0 0 I 15 * * * * * * * 3732 * * * * 224 * * * * 3863 * * 15 0 * * * * * * 3048 0 0 A 16 1848 * * * * * * * * * * * * * * 2701 2671 1282 * * 16 0 * * * * * * 3048 0 0 E 17 3547 * 523 2195 * * * * * * * * * * * * * * * * 17 0 * * * * * * 3048 0 0 T 18 * * * * * * * * * * * * * * * 1911 446 * * * 18 0 * * * * * * 3048 0 0 Q 19 * * * * * 523 * 3749 * * * * * 2123 * * * * * * 19 0 * * * * * * 3048 0 0 H 20 * * * * * * 0 * * * * * * * * * * * * * 20 0 * * * * * * 3048 0 0 G 21 * * 2427 * * 632 * * * * * * * 3644 * 3492 * * * * 21 0 * * * * * * 3048 0 0 T 22 * * * * * * * * * * * * * * * * 0 * * * 22 0 * * * * * * 3048 0 0 I 23 3749 * * * * * * 3732 * * * * * * * * * 234 * * 23 0 * * * * * * 3048 0 0 V 24 3547 * * * * * * 2649 * 3863 * * * * * * 3749 709 * * 24 0 * * * * * * 3048 0 0 I 25 * * * * 3916 * * 3732 * 2901 1021 * * * * * * 2108 * * 25 0 * * * * * * 3048 0 0 R 26 * * 3747 802 * * * * 3644 * * * * 2346 3732 * * * * * 26 0 * * * * * * 3048 0 0 V 27 * * * * * * * 3747 * 2902 * * * * * * * 337 * * 27 0 * * * * * * 3048 0 0 Q 28 * * * * * 3391 * * 1378 * * * * 2258 * 2112 3655 * * * 28 0 * * * * * * 3048 0 0 Y 29 * * * * 3391 * * * * 3492 * * * * * * 3655 2819 * 750 29 0 * * * * * * 3048 0 0 E 30 2830 * * 2796 * * * * 3547 * * * 4018 3747 * 1920 2124 * * * 30 221 * 2819 * * * * 3048 0 0 G 31 * * * * * 322 * * * * * * * * * * 2320 * * * 31 0 * * * * 0 * 2908 0 1384 D 32 * * 3732 3749 3492 * * * 2819 * * * * * * 1360 2118 * * * 32 145 * 3391 * * * * 3048 0 0 G 33 3533 * 972 3684 * 2765 * * * * * * * * * 3573 3397 * * * 33 0 * * * * 0 * 3005 0 1079 S 34 1487 * * * * 2902 * * 3463 * 3492 * * * 3391 3732 3644 3655 * * 34 0 * * * * * * 3048 0 0 P 35 3492 * * * * * * * * * * * 134 * * * * * * * 35 0 * * * * * * 3048 0 0 C 36 * 0 * * * * * * * * * * * * * * * * * * 36 0 * * * * * * 3048 0 0 K 37 * * * * * * * * 1058 * * * * * 944 * * * * * 37 0 * * * * * * 3048 0 0 I 38 * * * * * * * 550 * 2571 * * * * * * * 2748 * * 38 0 * * * * * * 3048 0 0 P 39 3492 * * * * * * * * 3655 * * 266 * * * * * * * 39 0 * * * * * * 3048 0 0 F 40 * * * * 2796 * * 2264 * * 3655 * * * * * * 815 * * 40 236 2727 * 0 * * * 3048 1543 0 E 41 2071 * * 3732 * 3655 * 4018 * * * * * * 3406 2227 3492 2748 * * 41 0 * * * * * * 3048 0 0 I 42 3406 * * * 2571 * * 2158 * * * * * * * * 3863 1169 * * 42 0 * * * * * * 3048 0 0 M 43 2233 * * 2600 * * * 3644 * * 3732 * * 3863 * * 1718 3406 * * 43 341 2248 * 0 * * * 3048 1765 0 D 44 3406 * 750 * * * 3448 * 3547 * * 3747 * * * 4074 * * * * 44 103 * 3863 * * * * 3048 0 0 L 45 2492 * * 3445 * 3366 3322 * 3812 1743 * * * * * 3572 3656 * * * 45 0 * * * * 0 * 3014 0 1000 E 46 2614 * * 2796 * 2475 * * * * 3644 2902 3916 * * 3655 4018 3448 * * 46 129 3547 * 0 * * * 3048 1000 0 K 47 4018 * 4074 3747 * 2571 * * 2796 * * 2720 3448 3644 * 3749 * 3406 * * 47 0 * * * * * * 3048 0 0 R 48 3235 * * 4406 * 2181 * 3747 3655 * 2902 * 3406 * 3732 3644 3492 * * * 48 0 * * * * * * 3048 0 0 H 49 3052 * * 2405 * * 3732 * 2519 * * 3644 * * * * 2849 2171 * * 49 0 * * * * * * 3048 0 0 V 50 * * * * * * 3916 2010 * * * 2065 2901 * * 3749 3863 2560 * * 50 276 2520 * 0 * * * 3048 1575 0 L 51 * * * * 3547 * * * 2825 3732 * * * 3863 3644 * 2615 1373 * * 51 0 * * * * * * 3048 0 0 G 52 2427 * * * * 424 * * * * * 3863 * * * * * * * * 52 0 * * * * * * 3048 0 0 R 53 * * * * * * * 4018 * * 2427 3547 * * 769 * * 3644 * * 53 0 * * * * * * 3048 0 0 L 54 * * * * * * * * * 217 4074 * * * * * * 3644 * * 54 0 * * * * * * 3048 0 0 I 55 * * * * * * * 604 * * * * * * * * * 1549 * * 55 0 * * * * * * 3048 0 0 T 56 * * * * * * * * * * * * * * * 3747 112 * * * 56 0 * * * * * * 3048 0 0 V 57 1222 * * * * * * * * * * * 2427 * * * 3644 1712 * * 57 0 * * * * * * 3048 0 0 N 58 * * * * * * 2829 * * * * 219 * * * * * * * * 58 0 * * * * * * 3048 0 0 P 59 * * * * * * * * * * * * 0 * * * * * * * 59 0 * * * * * * 3048 0 0 I 60 * * * * 2720 * * 1419 * * * * * * * * 2427 2127 * 4074 60 0 * * * * * * 3048 0 0 V 61 2137 * * * * * * 2025 * * 3391 * * * * * * 1212 * * 61 406 4074 2427 1000 1000 * * 3048 1000 0 T 62 2391 * * * 3270 * * 3406 * * * * * * * 2702 1128 * * * 62 0 * * * * 0 * 2863 0 1216 E 63 3492 * 3863 1267 * 3747 * * 3916 * * 3547 * * * * 2318 * * * 63 0 * * * * * * 3048 0 0 K 64 1701 * * * * * * * 2195 * * 2043 * 3916 * 3749 3463 * * * 64 112 3749 * 1000 1000 * * 3048 1000 0 D 65 3644 * 2147 2697 * * * * * * * 889 * * * * * * * * 65 0 * * * * * * 3048 0 0 S 66 2786 * 4018 2689 * 2427 * * 3863 * * * * * * 2740 2649 3747 * * 66 0 * * * * * * 3048 0 0 P 67 * * * 2819 * 1914 * * 1791 * * * 2796 * 3747 * * 3547 * * 67 0 * * * * * * 3048 0 0 V 68 3916 * * * * 2427 * * * * 3749 * * * * * 3747 740 * * 68 0 * * * * * * 3048 0 0 N 69 * * * * 1881 * * 3655 * 3046 2127 2796 * * * * 3492 3916 * * 69 0 * * * * * * 3048 0 0 I 70 * * * * * * * 655 * 3547 * * * * * * * 1839 * * 70 0 * * * * * * 3048 0 0 E 71 * * * 0 * * * * * * * * * * * * * * * * 71 0 * * * * * * 3048 0 0 A 72 3732 * * * * * * 2902 * 3547 1497 * * * * * 3863 1824 * * 72 0 * * * * * * 3048 0 0 E 73 * * 3749 742 * * * * * * * 4018 * 2427 * * * 3644 * * 73 0 * * * * * * 3048 0 0 P 74 3547 * * * * * * * * 2427 * * 457 * * * * * * * 74 0 * * * * * * 3048 0 0 P 75 * * * * * * * * * * * * 0 * * * * * * * 75 0 * * * * * * 3048 0 0 F 76 * * * * 613 * * * * 3547 * * 2427 * * * * * * 3747 76 0 * * * * * * 3048 0 0 G 77 * * * * * 0 * * * * * * * * * * * * * * 77 0 * * * * * * 3048 0 0 D 78 * * 743 1658 * * * * * * * * * * * * * 3547 * * 78 0 * * * * * * 3048 0 0 S 79 * * * * * * * * * * * 2427 * * * 297 * * * * 79 0 * * * * * * 3048 0 0 Y 80 * * * * 2571 * * 2427 * * * * * * * * 3547 3644 * 1058 80 0 * * * * * * 3048 0 0 I 81 * * * * * * * 0 * * * * * * * * * * * * 81 0 * * * * * * 3048 0 0 I 82 * * * 2689 * * * 1807 3547 * * * * * * * 2649 2965 * 2427 82 0 * * * * * * 3048 0 0 I 83 * * * * * * * 1378 * * * * * * * * * 701 * * 83 0 * * * * * * 3048 0 0 G 84 * * * * * 0 * * * * * * * * * * * * * * 84 297 * 2427 * * * * 3048 0 0 V 85 2592 * * * * 3212 * * * * * 3270 * * 3734 3406 1953 2359 * * 85 0 * * * * * 0 2863 0 1216 E 86 3212 * * 3483 * 520 * * * * * * * * * * 3245 * * * 86 0 * * * * * 0 2863 0 1216 P 87 3245 * 2045 2421 * * * * * * * * 3483 * * * 1899 3212 * * 87 165 * 3212 * * * 0 2863 0 1216 G 88 * * 2089 * * 2340 * * 2476 * * * * * * 3480 1745 * * * 88 0 * * * * 599 1557 2717 0 1566 Q 89 3695 * 2293 * * * * * 2093 * 3551 * * 2765 2698 3354 * * * * 89 0 * * * * * 0 2933 0 1000 L 90 * * * * * * * 1712 * 744 * * * * * * * 3354 * * 90 0 * * * * * 0 2933 0 1000 K 91 * * * * * * * * 1245 * * 2559 * * * 2517 2098 * * * 91 0 * * * * 0 * 2933 0 1000 L 92 * * * 3916 3547 * 1653 * * 3732 * * * 2097 * * * * * 2177 92 0 * * * * * * 3048 0 0 N 93 2779 3863 * * * * 1751 * * * * 3732 * 1275 * * * * * * 93 0 * * * * * * 3048 0 0 W 94 * * * * * * * * * * * * * * * * * * 0 * 94 0 * * * * * * 3048 0 0 F 95 * * * * 1492 * 1119 * 3468 * * 3417 * * * * * * * * 95 0 * * * * * * 2992 0 0 K 96 * * * * * * * * 1454 * * * * 1419 1937 * * * * * 96 0 * * * * * * 2992 0 0 K 97 3564 * * 1695 * * * * 910 * * * 3747 * * * * * * * 97 0 * * 0 * * * 2992 0 0 //