HHsearch 1.5 NAME d1oaia_ FAM FILE d1oaia_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1oaia_.a3m DATE Mon Mar 8 22:50:12 2010 LENG 59 match states, 59 columns in multiple alignment FILT 69 out of 73 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.0 EVD 0.4673 2.4776 SEQ >ss_dssp CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCSCGGGGCC >sa_dssp EECDEECDECBDDBCEEBDBCDECACDBADEBECDCEDACECBEEDDEDEECDEDADDE >ss_pred CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHCC >ss_conf 98878999999999998299999999999870968999999999998518998888349 >Consensus pxLxpxqqxmixxxxxxTgmnxxxsxxcLexxxWdxxxAxxxFxxlxxxxxIPxeAFxk >d1oaia_ PTLSPEQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFTHLKAKGEIPEVAFMK >UniRef50_D2W3R0(109-164:205) Predicted protein n=1 Tax=Naegleria gruberi RepID=D2W3R0_NAEGR E=6e-06 s/c=0.92 id=21% cov=97% -TLCHQRMELVLYLMNRTNLVHVFAYDCLQQYQWNINSALQRVFELASMNRLPSHAF-- >UniRef50_D2VFN8(429-484:484) Putative uncharacterized protein AM44 n=1 Tax=Naegleria gruberi RepID=D2VFN8_NAEGR E=1e-09 s/c=1.15 id=25% cov=97% --LTALHESIIVQFTSITGLRREYALPCLEYSNWNISNAINTFNTEKMNGNIPLYCFQ- >UniRef50_B6H923(632-674:689) Pc16g10160 protein n=17 Tax=Leotiomyceta RepID=B6H923_PENCW E=2e-08 s/c=1.40 id=33% cov=73% ------QEQMVAQMSGKSGMTFEYSEMALAGNGWNPELAWKNFEQLKV----------- >UniRef50_C4R7R9(543-597:598) Poly(A)RNA binding protein involved in nuclear mRNA export n=1 Tax=Pichia pastoris GS115 RepID=C4R7R9_PICPG E=8e-13 s/c=1.36 id=30% cov=95% --LTPQQQELAHKVLMETKLNPEFTLMLCEQSHWNYEAAIQAFRSSHQQGQIPPHAF-- >UniRef50_UPI0000DB7302(437-492:492) PREDICTED: similar to nuclear RNA export factor 2 n=1 Tax=Apis mellifera RepID=UPI0000DB7302 E=3e-11 s/c=1.24 id=26% cov=97% ---SSEKKELLNKFTEITSLNKDWCQTYLEEAKWNIRKAISNFMKDYKSSAIPAEAFSR >UniRef50_D1ZZZ3(487-541:542) Putative uncharacterized protein GLEAN_08131 n=1 Tax=Tribolium castaneum RepID=D1ZZZ3_TRICA E=2e-10 s/c=1.21 id=21% cov=95% ---AKQKSQVITAMKLITNLTTEWAKKCLEECHYDFKSALALFVDLYKVDKIPADGFQ- >UniRef50_B7P9R3(68-125:126) Putative uncharacterized protein n=1 Tax=Ixodes scapularis RepID=B7P9R3_IXOSC E=4e-16 s/c=1.48 id=34% cov=100% PSPMGEQERLVLELCAQTRMNRQFSERCLEQNSWDLQKAFAVFTELNVRGGIPPEAFQ- >UniRef50_Q6CGM7(474-530:531) YALI0A18007p n=1 Tax=Yarrowia lipolytica RepID=Q6CGM7_YARLI E=8e-12 s/c=1.25 id=19% cov=98% -GLNPDQALIVRQLMEATRLNARYARMCAEQAGFVPEQTMALFKQAQEGGSLPPDAFM- >UniRef50_B5DRB8(586-641:641) GA28357 n=2 Tax=pseudoobscura subgroup RepID=B5DRB8_DROPS E=4e-10 s/c=1.18 id=26% cov=97% -SLGAKSHKLIL-FLQLTGLTPSWCTTIVESAEWDFERASKMFLEMKNNREIPELAFV- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * P 1 * * * * * * * * * * * * 0 * * * * * * * 1 0 * * * * * * 3191 0 0 T 2 4003 * * * * 1381 * * * 4454 * * * * * 1582 2522 * * * 2 0 * * * * * * 4279 0 0 L 3 * * * * 4069 * * 4032 4364 371 * * 5211 * * 5048 * * * * 3 63 * 4555 * * * * 4649 0 0 S 4 3498 3287 5184 * * 5074 * * * * 4484 1953 5768 * * 1833 2738 * * * 4 0 * * * * 0 * 4950 0 1000 P 5 3403 * 5041 3094 * 5772 4617 * 4723 * * * 1032 2844 * 4936 * * * * 5 27 5754 * 2000 415 * * 4967 1000 0 E 6 4886 * 2516 1532 * 4562 * 3778 3576 4797 * * * 3143 * 5760 * 3665 * * 6 83 4168 * 944 1058 * * 5070 1808 0 Q 7 * * * * * * 4105 * 2280 * 5345 5515 * 1014 2947 4292 * 6212 * * 7 19 6261 * 1585 585 * * 5029 1000 0 Q 8 4835 * 6191 2135 * * 3841 * 4876 4177 3553 * * 1370 4275 4620 * * * * 8 0 * * * * * * 5021 0 0 E 9 4065 * 4340 1873 * * * * 4722 4847 5951 3077 * 1987 5378 4304 4011 5533 * * 9 34 5440 * 2705 240 * * 5018 1656 0 M 10 5729 * * * * * * 3046 5003 1482 1367 * * * * * 5755 3951 * * 10 0 * * * * * * 5010 0 0 L 11 4815 * * * * * * 1590 * 2628 4646 * * * * 5048 6133 1373 * * 11 26 5821 * 1000 1000 * * 5013 1000 0 Q 12 3645 5557 6249 4232 * * 5673 4071 3890 2132 5057 3512 4642 3447 4205 6428 4194 3508 * * 12 55 * 4738 * * * * 5013 0 0 A 13 2610 * 5394 3007 5590 * * 5520 2673 6608 5415 5524 * 2417 5252 4320 3570 4677 * 4429 13 0 * * * * 0 * 4933 0 1104 F 14 * * * * 1166 * * 3878 * 1710 3533 * * * * * 5201 3896 * * 14 0 * * * * * * 5110 0 0 S 15 3567 3279 * * * * 4494 5252 4119 3569 3901 * * 3198 * 1387 4575 * * * 15 0 * * * * * * 5110 0 0 T 16 2233 * * 2219 5720 6412 * * 4732 3431 5716 4433 * 2791 3920 4501 4065 4983 * * 16 0 * * * * * * 5110 0 0 Q 17 4433 * * 2416 5852 * 6365 3324 5118 3201 6099 6739 * 1911 3091 4688 * 4926 * 5606 17 0 * * * * * * 5110 0 0 S 18 * * * * * * * * * * * * * * * 1726 519 * * * 18 0 * * * * * * 5076 0 0 G 19 * * * * * 1064 * * 2919 * * 3295 * 3440 3065 4441 5065 * * * 19 0 * * * * * * 5076 0 0 M 20 * * * * * * * * * 1067 1056 * * * * * * 4590 * * 20 0 * * * * * * 5076 0 0 N 21 * * * * * * * 4269 2905 * * 817 * * 4023 6031 2803 5222 * * 21 0 * * * * * * 5076 0 0 L 22 3370 * 5521 * 6415 * 4414 4494 5755 2221 5811 6590 2720 4870 3574 3954 4850 3042 * 5222 22 0 * * * * * * 5076 0 0 E 23 4457 * 3360 1603 * 6592 * 5812 3631 * * 6164 3377 2885 4121 6033 5446 3917 * 6438 23 0 * * * * * * 5076 0 0 W 24 * * * * 1987 * 5636 * * * * * * * 4590 * * * 1256 1902 24 0 * * * * * * 5076 0 0 S 25 2046 2662 * * * 4342 * * * 5861 * * * * * 1104 4470 5446 * * 25 0 * * * * * * 5076 0 0 Q 26 5796 6366 * 2550 5476 6540 4686 4342 3359 3780 5193 * * 2932 3264 5699 3289 3862 * 4192 26 0 * * * * * * 5076 0 0 K 27 * * 3870 5074 * * * * 1550 5475 2045 * 5424 3234 3195 5446 4888 * * * 27 0 * * * * * * 5076 0 0 C 28 4250 707 * 5861 4631 * * 3875 * 3166 * * * * * 4590 * * * 4147 28 0 * * * * * * 5076 0 0 L 29 4166 3484 * * * * * * * 315 * * * * * * * 4292 * * 29 25 5871 * 0 * * * 5076 1000 0 Q 30 3695 * 5481 1008 * 6031 4090 6291 4667 * * 6355 * 3532 * 3886 4195 4157 * * 30 0 * * * * * * 5076 0 0 D 31 5941 * 2122 1690 * 3725 * * * 5619 5566 6256 * 1998 * 4635 * * * 5424 31 0 * * * * * * 5076 0 0 N 32 2907 4815 4590 5566 * 5941 6287 * * * * 1645 * 6291 * 2392 3204 3986 * 4478 32 15 6613 * 0 * * * 5076 1000 0 N 33 5076 * 4709 3295 * 2223 4781 * 5013 6148 * 1561 * 3357 * 3544 * * * 6340 33 0 * * * * * * 5076 0 0 W 34 * * * * 5114 5882 * * * * * * * * * * * * 128 4673 34 0 * * * * * * 5076 0 0 D 35 * * 915 6344 * * * * * * * 1327 * * * 5064 * 5114 * * 35 0 * * * * * * 5076 0 0 Y 36 * * * * 2316 * * 3104 5619 2746 4148 * 4284 * * * 5789 5869 * 1432 36 0 * * * * * * 5076 0 0 T 37 4829 * 3168 1796 * * * * 3403 * * 2781 5686 3256 4226 3736 3775 * * * 37 0 * * * * * * 5076 0 0 R 38 3190 * * * 5842 5058 4954 * 2806 4593 * 3868 * 2416 2204 3453 * 4010 * * 38 0 * * * * * * 5076 0 0 S 39 149 5437 * * * * * * * * * * * * * 4437 5114 * * * 39 25 5861 * 1000 1000 * * 5076 1000 0 A 40 3347 5842 * 6642 6772 4272 * 2451 * 1437 4459 * * 5869 * 4458 3792 4290 6415 5796 40 0 * * * * * * 5076 0 0 Q 41 2660 * 4905 4239 5168 * 5871 5437 2648 4890 5636 4095 * 2389 6287 3596 5049 3774 5271 * 41 0 * * * * * * 5076 0 0 A 42 2522 5460 * * * 5219 * 3922 4438 3537 5152 2406 * 5871 4384 3982 3630 2716 * * 42 0 * * * * * * 5076 0 0 F 43 * * * * 102 * * * * 4590 * * * * * * * 5222 * * 43 43 * 5090 * * * * 5076 0 0 T 44 3905 * 6074 2946 5139 * * 5434 3646 2770 4423 3387 * 2982 5748 4628 2613 5694 * * 44 100 * 3903 * * * 0 5066 0 1536 H 45 4777 * 3619 1768 * 6270 6523 * 3696 3984 5562 4025 * 2724 5789 3416 3668 * * * 45 86 * 4116 * * 2060 396 4969 0 2410 L 46 4279 * 5584 4384 6019 * 5539 4940 4644 743 3758 5212 * * * 4674 * 4926 * * 46 0 * * * * 1286 761 4935 0 2805 K 47 4570 * 5831 * 4879 * 4224 * 1406 5590 * 2824 * 2608 * * * * * 2742 47 28 * 5697 * * 0 * 5050 0 2306 A 48 2189 * 5871 3153 * 6577 * * 2850 * 5415 4675 * 4658 4715 2321 4356 3148 * * 48 128 * 3563 * * * 0 5068 0 1000 K 49 3578 * 5252 2644 * 4301 * * 2794 5035 4518 3294 * 3498 3070 4269 * 3328 * * 49 0 * * * * 2401 303 5036 0 2636 G 50 3412 6089 3393 * * 1272 4526 * 5668 * * 2223 * 6024 4307 5648 5712 * * * 50 0 * * * * 0 * 5029 0 2420 E 51 4583 * * 3664 * 5414 * * 2699 6351 * 3207 * 2412 3535 2946 2692 5462 * * 51 0 * * * * * * 5063 0 0 I 52 * * * * * * * 584 * 1859 * * * * * * * 4125 * * 52 0 * * * * * * 5063 0 0 P 53 5774 * * * * 5864 * * * * * * 116 * * 4578 * * * * 53 0 * * * * * * 5063 0 0 E 54 2321 * 4324 3086 * * * * 3647 4070 * * 1506 5847 3611 4591 * * * * 54 0 * * * * * * 5063 0 0 V 55 5516 * 2004 1151 * * 4447 5014 4762 4275 * 5828 * 5267 * 5897 * 5089 * 5405 55 0 * * * * * * 5063 0 0 A 56 230 5405 * * 5386 4797 * * 4578 * * * * * * * * * * 5524 56 0 * * * * * * 5063 0 0 F 57 * * * * 62 * * * * * * * * * * * * * * 4566 57 0 * * * * * * 5068 0 0 M 58 * * * * * * * 2107 * * 3174 5167 * 1974 * 4708 * 1572 * * 58 0 * * * * * * 4499 0 0 K 59 * * * 3940 * * * * 725 * * * * 2595 2605 * * * * * 59 0 * * 0 * * * 3462 0 0 //