HHsearch 1.5 NAME d1o0va1 FAM FILE d1o0va1 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1o0va1.a3m DATE Mon Mar 8 22:27:26 2010 LENG 104 match states, 104 columns in multiple alignment FILT 105 out of 665 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 7.9 EVD 0.4569 0.0273 SEQ >ss_dssp CCCCCEEEEEECCCCTTSCCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEEEEEEEC CCCC >sa_dssp EECDBECDCDDCEDEEEEEDCEDACACACADCACCDECEBBABCDEEECEEEDCEEDEEEEEECBCBDADADBDCEDADDDCCABACACBDEEDCEDDCD CEEE >ss_pred CCCCCEEEEEECCCCCCCCCCCEEEEEEEEECCCCCCEEEEEECCCEEEECCCCCCCEECCCCEEEEEEEEEEECHHCCCCCEEEEEEEECCCCEEEHHH HHCC >ss_conf 9766668996078300147785189999996773552699998078041000001210058972999999999100302798699999957882010013 0069 >Consensus xxxPPxVxvxxxxxxxxxxxxxxxtLxCxvxxfxPxxixixWxxxxxxxxxxxxxxxxxxxxxxysxxSxLxixxxxxxxgxxytCxVxHxxxtxxxxxx xxxx >d1o0va1 DFTPPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFEDSTK KCAD >UniRef50_P01871(221-307:452) Ig mu chain C region n=83 Tax=Eutheria RepID=IGHM_HUMAN E=0.0003 s/c=0.53 id=19% cov=83% -----AIRVFaIPPSFASIFLTKSTKLTCLVTDLTTyDSVTISWTRQNGEAVKTHTNISESHPNATFSAVGEASICEDDWNSGERFTCTVTH-------- ------ >UniRef50_UPI00017B3893(423-518:774) UPI00017B3893 related cluster n=2 Tax=Tetraodon nigroviridis RepID=UPI00017B3893 E=0.0007 s/c=0.47 id=17% cov=91% ---------IQEPPVQAFEANRQVTISCLLVGSSLIGFSISWKVAGKEASIFSTEQPMNHDNGTQTLLSFLNVSTEDWLAHKQVSCEGKNpcSGRVYEQH VSKSK- >UniRef50_Q8HWE5(227-321:355) MHC I like leukocyte 2 n=27 Tax=Murinae RepID=Q8HWE5_MOUSE E=1e-06 s/c=0.57 id=12% cov=73% -----------------------VTLTCRAFNLYTREATLVWLQDGKPVQQKTFRSETilPSGDGTYQARVSIRVLPGQEPQ---FSCNLRHGNHSIMQT AVS--- >UniRef50_UPI000186D476(35-126:1169) echinoid, putative n=2 Tax=Paraneoptera RepID=UPI000186D476 E=8e-07 s/c=0.60 id=17% cov=86% -LTPPEPPKISPGENPVTTEGKKMELVCSSVGGSPEPYIKWYREGNV---HPLESVVKKANGKEDVTRAVLELTPTKEDDGAVFKCVVWNRA-------- ---- >UniRef50_B0CLY8(148-237:404) Si:dkey-281i8 n=7 Tax=Danio rerio RepID=B0CLY8_DANRE E=6e-05 s/c=0.54 id=20% cov=88% -FASPAVTV--KGEEPVAGCLEVILASCFASNARP-AAEVTWRLGDLENSLKTTTNHTVNTNETITVVSYLLGVPFKHLHKKNIQCVVKHNSLT------ ---- >UniRef50_P01875(321-421:446) Ig mu chain C region n=1 Tax=Gallus gallus RepID=IGHM_CHICK E=2e-13 s/c=0.76 id=18% cov=94% ---PPSVYVFPPPTEQ-LNGNQRLSVTCMAQGFNPPHLFVRWMRNGEPLPQSQSVTSAPMAENPenesYVAYSVLGVGAEEWGAGNVYTCLVGHEALPLQ LAQKS--- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * D 1 * * 620 3470 * * * * * * * 1948 * * * * * * * * 1 0 * * * * * * 4459 0 0 F 2 * * * * 1058 * * 4097 * 2459 4091 * * * * * 3961 4299 * 3243 2 0 * * * * * * 5752 0 0 T 3 2733 * 5062 4627 * 5053 * * 3940 4715 * 4532 3419 * * 2211 1915 5160 * * 3 0 * * * * * * 6574 0 0 P 4 3407 * * 4663 * * * * 6089 * * * 422 4641 * 4401 5800 * * * 4 0 * * * * * * 7541 0 0 P 5 4688 * 5259 5810 * * * * * * * * 173 * 5041 * * * * * 5 0 * * * * * * 7974 0 0 T 6 2939 6158 6192 3836 * 5108 * * 2770 * * 4362 * 3922 4194 2957 2197 3639 * * 6 39 6252 6228 0 * * * 8133 1000 0 V 7 * * * * * * * 3016 * 2709 5234 * 4032 * 5988 6455 5241 780 * * 7 20 * 6153 * * 0 * 8175 0 1000 K 8 * * 6190 3914 4279 * 5080 * 2798 5204 * 4833 4284 4316 3098 2046 2968 * * 4488 8 57 6154 5356 0 * 0 * 8175 1000 1000 I 9 4493 * 6153 * 6016 4863 * 1983 5383 2948 5078 * 4579 * * * * 1273 * * 9 102 * 3866 * * 936 1067 8326 0 1654 L 10 6002 * * * 2629 * 5758 3427 * 2364 5365 * * 6034 5193 3106 3285 2807 * 3497 10 80 6154 4651 0 * 2231 346 8263 1000 3222 Q 11 3277 5698 * 3460 * 4020 5932 3636 6215 3855 * * 2748 2717 4451 4288 4104 3997 * 5205 11 44 * 5073 * * 2636 253 8250 0 3616 S 12 4265 * * 3377 * 5260 4534 * 3883 5312 * 4569 1240 5060 * 3330 3770 5562 * * 12 19 * 6291 * * 1191 831 8237 0 3913 S 13 4584 * 4567 * 5976 3664 * 5580 5416 * * * 1705 * 5296 1349 5963 5385 * 6363 13 49 6564 5451 2000 415 1021 980 8298 1000 3189 C 14 4402 4622 * 3216 5058 5126 6006 4315 6157 4064 5714 5091 3294 * 3280 2599 2785 4980 6481 * 14 34 * 5441 * * 635 1489 8230 0 2760 D 15 4636 6407 3714 2034 6191 6247 * 6332 3611 3355 5308 3679 5050 6360 4767 3482 5404 3414 5681 * 15 78 * 4248 * * 0 * 8274 0 1963 G 16 3864 * 3396 2817 * 4460 6159 4662 6238 5171 5014 4288 1994 3629 * 3994 5397 5503 * 4971 16 85 * 4129 * * 1883 456 8357 0 2789 G 17 4499 * 5293 4760 4189 3577 5075 3568 4620 3966 6208 3527 3876 3869 5421 3356 3775 3248 * * 17 37 * 5321 * * 460 1873 8320 0 3591 G 18 4060 * 4284 5808 3980 3569 6558 3006 5149 2080 * 6437 4923 4417 * 4131 3666 3622 6069 * 18 153 5821 3597 2000 415 0 * 8375 1000 2558 H 19 5825 * 3239 3278 4100 3271 3566 5644 5942 4739 4405 3633 6460 5568 3625 2870 4313 5324 * * 19 19 * 6274 * * 576 1602 8322 0 3536 F 20 3280 5982 3845 4001 4344 4330 5167 3942 5573 4446 * 3746 4345 5087 5269 3109 3710 3744 5110 6024 20 49 * 4893 * * 1435 666 8370 0 2193 P 21 6461 * * 2774 5783 2435 5270 6280 3649 5971 * 2667 3458 4998 4220 2890 4772 * * * 21 95 6291 4287 2000 415 * 0 8386 1000 3087 P 22 4401 * 4404 2789 * 4282 * 6765 2846 * 6085 4232 4002 2873 2449 4435 3947 * * * 22 93 6510 4277 2585 263 1528 615 8453 1000 4156 T 23 3801 * 6133 3831 * * * 5736 2570 5278 * 4266 4121 5018 4493 2648 2171 3952 * * 23 73 * 4341 * * 972 1028 8472 0 4497 I 24 2403 * 6482 * * 4244 6260 3276 5783 2831 5646 4884 6645 6220 * 4533 5437 1654 * 6551 24 57 5632 5750 1894 452 1335 729 8325 1740 4118 Q 25 4876 * 6634 3341 * 6808 6313 5438 4600 5178 * 4082 5531 3604 4161 3261 1459 4137 * * 25 46 * 4985 * * 423 1977 8341 0 3934 L 26 5326 * * * 3976 * * 3641 * 597 * * * * * * 5934 2978 * 5205 26 0 * * * * 347 2227 8342 0 2747 L 27 4781 * 6791 6172 * 5027 * 3373 5624 2981 4824 6332 * * 4664 2782 1792 2783 * * 27 30 6670 6546 2000 415 0 * 8335 1000 1000 C 28 * 0 * * * * * * * * * * * * * * * * * * 28 0 * * * * * 0 8282 0 1000 L 29 4451 * 4830 4108 4552 * 3491 4093 5756 2322 5556 * * 3983 4162 3882 3608 3261 4953 5283 29 0 * * * * 0 * 8282 0 1000 V 30 1581 * * * * * * 2950 * 4136 6298 * * * * 3260 4670 1630 * * 30 0 * * * * * * 8425 0 0 S 31 5087 * 5016 3257 5245 4798 6590 5855 3956 5317 6561 4752 6919 4051 4208 1889 2973 4104 6544 5722 31 19 6246 * 1000 1000 * * 8425 1000 0 G 32 * * 2738 5872 * 1295 4301 * 3986 6570 * 2666 6216 * 3758 4155 * * * * 32 53 6488 5308 1585 585 * * 8425 1000 0 Y 33 4521 6086 6200 6202 1188 3453 * 5297 * 4709 4937 * 6308 * 6186 2867 6084 5790 * 3447 33 37 6401 6200 0 * 1375 703 8420 1000 2079 T 34 4170 * * * 2951 * 4663 * 3979 4926 6044 3732 4235 4913 3890 2782 4617 * * 2006 34 31 6776 6344 1000 1000 667 1434 8390 1000 2093 P 35 6417 * * 6783 * * 5782 6374 * 4595 * * 357 5563 6138 5478 4633 5118 * * 35 72 5686 5091 639 1482 * 0 8380 1650 1705 G 36 3263 * 3614 2923 6533 4391 5602 6123 3431 4769 * 4124 2585 3881 4218 3614 6749 * 6106 6867 36 105 6423 4092 3170 170 321 2325 8349 1000 3168 T 37 2933 * 2583 4628 6695 3484 4834 4377 * 4911 * 3410 3318 3876 6302 3819 3874 4966 * * 37 93 6733 4242 1000 1000 244 2683 8210 1000 3393 I 38 2936 * * 4746 4536 * * 1874 * 3032 6542 * 5555 5185 * 6168 5390 1869 6541 6360 38 51 * 4841 * * 247 2668 8388 0 3647 Q 39 4886 * 4120 2988 5514 * 6570 4794 3041 5692 6388 3489 * 3663 3641 3123 2957 5299 6210 5026 39 0 * * * * 941 1061 8210 0 2869 I 40 6624 * * * 4342 * * 1869 6577 2246 5067 * * * * 5457 5164 1629 5133 6233 40 0 * * * * 0 * 8243 0 1696 T 41 * * 6861 6531 5153 * 5542 4733 3283 6989 5443 5185 * 3764 3122 2458 1819 5683 4087 * 41 0 * * * * * * 8426 0 0 W 42 * * * * 6118 6230 * * 6265 3749 6531 * * * * * * 6256 256 5394 42 10 7167 * 2585 263 * * 8426 1000 0 L 43 * * 4863 5029 3280 * 5083 * 2304 2079 4844 6642 * 4911 4430 5592 4879 5757 4090 3226 43 0 * * * * * * 8426 0 0 E 44 * * 4422 2726 * 4805 4888 6466 2145 4569 5813 4915 * 4685 2242 4805 * 3250 * 6492 44 11 6981 * 3585 126 * * 8426 1000 0 D 45 5478 * 2065 4851 * 2507 5255 * 4293 * * 1615 * 5032 4650 4209 * * * * 45 34 7131 5927 0 * * * 8426 1000 0 G 46 4808 6553 4074 3857 5906 1344 * 5365 5581 4915 * 2526 6104 5334 5490 3812 5057 * * * 46 13 6753 * 3700 115 984 1016 8424 1000 1711 Q 47 5686 * 5337 3245 * 4097 4765 3957 2701 4394 5172 4372 4738 2842 4699 4626 3853 3503 * * 47 49 * 4894 * * * 0 8416 0 1000 V 48 5753 * 5064 2164 * 5359 * 6046 4047 5604 * 5085 3259 3904 4537 3203 4421 2435 6188 6609 48 43 * 5074 * * 925 1079 8361 0 2771 M 49 4234 * 4539 * 6213 5035 5443 2296 4764 1882 5667 6162 5756 5341 5512 4171 5642 2809 * 6933 49 55 5356 6302 2055 397 1285 762 8380 2220 3291 D 50 4638 * 3886 4106 * 6342 5764 4824 4514 4978 * 5687 2317 3409 5584 2890 2749 4023 6342 * 50 53 5170 6882 1233 799 964 1037 8218 2143 2777 V 51 3648 5591 3492 3172 * 2928 4361 4483 5564 4536 * 3923 4424 4170 5372 2813 4380 5818 * 6595 51 53 4782 * 1538 609 * 0 8375 2743 2258 D 52 3772 6391 4158 4170 4646 2659 4480 4388 4921 4649 6562 4192 4471 4406 4634 2924 3739 4833 * * 52 42 6696 5729 0 * 611 1535 8374 1000 2258 L 53 4864 6606 6635 3530 6969 4984 4458 4468 4311 3624 5622 4354 5322 4637 3820 3198 3011 2855 6486 6730 53 62 4884 6888 1902 449 1544 606 8414 2133 2242 S 54 4659 * 4411 3663 4515 6130 6921 5340 4626 4571 * 4709 5731 3187 4274 2863 2208 3827 * 5798 54 0 * * * * 1598 579 8417 0 2254 T 55 4299 * 6618 4210 6630 4116 5448 4595 5402 4189 6110 4604 4140 4459 4602 2744 2126 3994 * 4860 55 49 5635 6210 1230 801 1051 951 8413 1605 1729 A 56 5687 * 3593 3163 5570 3904 6610 4426 3816 6966 6352 4132 3627 4031 6853 2852 3300 3912 6444 5354 56 10 7134 * 1585 585 0 * 8396 1000 1743 S 57 4838 * 4629 3807 4578 5809 5048 4580 5755 3609 * 5001 2545 4059 4534 2835 3400 4317 6633 5640 57 32 6031 7206 2424 298 * * 8425 1662 0 T 58 4052 * 4951 3646 * * * 3726 2569 3584 5657 6439 4521 3957 4330 4114 3137 3072 6442 6785 58 33 6091 6920 0 * * 0 8435 1689 1000 T 59 4511 * 4562 4012 5125 4549 5540 3463 3883 3833 4398 6220 3301 3304 3429 4010 6808 3706 * 5248 59 27 * 5756 * * 1016 984 8431 0 1682 Q 60 4656 * 4537 3229 * 4637 4414 6477 3962 3830 5529 2730 2963 2923 5998 4442 3746 * 6772 * 60 29 5664 * 654 1455 571 1614 8419 1743 2244 E 61 4495 * 3504 3411 * 2781 5123 * 4554 4759 5813 3583 3532 5026 4380 3151 3943 5988 6561 4336 61 13 6782 * 1585 585 0 * 8427 1000 1000 G 62 5086 * 2090 3570 * 2556 5506 6813 4252 * * 2437 5189 5779 * 3123 4666 6206 * * 62 69 5931 5030 0 * * * 8425 1656 0 E 63 4544 * 3371 4553 6663 1368 6783 * 3162 * * 4018 6501 4628 4165 3290 6990 * 5594 * 63 53 5959 5621 607 1543 * 0 8257 1645 2300 L 64 6827 * 6625 4586 6979 3953 5351 * 4445 2483 5077 5029 4803 6275 5253 3815 1460 * 5036 5840 64 171 4526 3877 986 1015 2137 372 8242 2819 3090 A 65 6647 * 4457 5657 1535 * 6446 6152 * 5447 * * * 5973 * 6612 4196 5356 5289 1320 65 0 * * * * 1439 664 8234 0 4545 S 66 6418 6626 5657 5891 5242 * 6780 * 4847 5690 3920 6487 * 3402 4013 1749 2078 4157 * 5170 66 19 6243 * 3459 138 839 1181 8345 1000 3458 T 67 3088 5276 * 7014 * * * 3071 4068 3134 5576 * 6507 4389 6400 4060 2376 2390 6557 6530 67 42 5681 6815 0 * 566 1624 8412 1079 2016 Q 68 * * 6462 5381 3572 6545 6966 3978 4916 4130 4748 * * 4995 3013 2344 2486 3358 5682 5433 68 31 * 5556 * * * 0 8291 0 1658 S 69 3561 6588 * 6300 * 4945 5605 * 4773 5539 * 5698 6239 6239 5084 686 4495 4647 * * 69 0 * * * * 438 1932 8270 0 2815 E 70 4771 * * 2714 5472 * 4589 4517 6217 4175 6425 6238 * 3700 3531 3052 3131 3556 5082 3369 70 32 6653 6402 0 * 0 * 8414 1000 1000 L 71 4980 * * * 5668 * 5592 3434 * 786 6671 * * 6575 * * 4675 2825 * 4186 71 0 * * * * * 0 8399 0 1000 T 72 5817 * 6245 3180 * 6648 4783 7055 5133 3880 6589 4779 5192 4030 3464 2913 1918 4297 6214 5595 72 0 * * * * * 0 8399 0 1000 L 73 * * * * 3323 6216 * 1897 * 2194 5254 * 5198 * * * 5359 1892 5645 4950 73 16 * 6545 * * 0 * 8399 0 1000 S 74 5954 5554 3936 * 6841 4941 7118 7017 3991 3475 6070 3891 3148 4535 4386 3004 2130 4352 * * 74 14 * 6670 * * 0 * 8417 0 1000 Q 75 2600 * 6261 3727 6209 6827 4150 6670 4511 3811 5698 5686 2339 5631 5303 3244 3727 3848 * 6557 75 36 * 5345 * * 0 * 8418 0 1000 K 76 3149 * 5172 3120 6221 5136 6537 6379 3878 * 6344 6482 * 3633 5118 2549 2143 3613 * * 76 59 5988 5376 0 * * 0 8258 1116 1744 H 77 4654 * 3053 2220 * 6631 3823 5602 3164 4413 6930 5102 4886 3231 3668 4070 5517 5172 * * 77 75 * 4302 * * 1324 736 8259 0 3113 W 78 5261 * 6856 2669 6237 3782 5326 4871 6691 4540 6324 * 6193 5237 3773 3399 5651 4702 1664 5989 78 54 5818 5700 0 * 2084 388 8449 1743 3884 L 79 5389 * 1647 3255 5278 5226 6541 4109 4532 3446 3735 3380 * 6132 5088 4373 5631 6309 * * 79 25 * 5876 * * 1530 613 8422 0 3861 S 80 3926 * 2476 3979 * 4849 3541 4137 3650 6450 6546 3166 4621 3294 4897 3513 5291 6500 * * 80 16 * 6525 * * 1006 994 8428 0 3647 D 81 4835 * 3875 4519 * 1024 4957 * 3821 5511 * 4223 5432 4548 5441 4132 6587 6494 * 5998 81 13 * 6763 * * 309 2373 8406 0 2930 R 82 3427 * 3364 3524 * 2974 4272 * 3864 5219 4876 5587 * 4555 4236 2553 3699 4306 * * 82 53 4797 * 1405 684 0 * 8419 2445 1718 T 83 5934 * 6597 2490 * 5333 6493 5301 4388 4929 4718 3841 4878 3968 5098 3460 2386 2874 * * 83 30 * 5610 * * * * 8428 0 0 Y 84 6147 * * * 1747 * * 3537 * 3896 6051 * * * * * * 3330 * 1251 84 0 * * * * * 0 8388 0 1234 T 85 4460 * 5812 6402 * * 5456 3264 4262 6520 * 6196 * 4467 3807 2944 1261 4881 * 5398 85 0 * * * * 0 * 8388 0 1234 C 86 * 33 * * * * * * * * 5467 * * * * * * * * * 86 0 * * * * * * 8428 0 0 Q 87 5434 * * 2348 * * 5436 4425 3314 4983 4367 4764 * 3520 3036 4505 4868 2485 5739 6848 87 0 * * * * * * 8277 0 0 V 88 2483 6099 * * * 6224 * 3957 * 5792 6834 * * * * 6555 5197 591 * * 88 0 * * * * * * 8267 0 0 T 89 4466 * 4138 2999 * 5542 5104 5390 4074 5339 * 3629 * 4040 3687 2584 2707 4729 4736 * 89 12 6913 * 0 * * * 8209 1000 0 Y 90 * * * * 5818 * 536 * * * * 2872 6433 5286 6268 * * 4846 * 3818 90 41 5165 * 692 1392 * * 8180 1618 0 Q 91 4146 * 5464 2411 * 6007 * 6400 3182 5858 5428 3473 2837 4480 3321 3517 5140 5016 6271 5623 91 0 * * * * * * 7999 0 0 G 92 1495 * * 4465 * 1693 * * 5825 * * 3861 6238 * * 2701 4748 * * * 92 0 * * * * * * 8040 0 0 H 93 4074 * 5767 6252 5430 3885 4258 * 4283 1199 4464 4753 6189 5593 5471 2839 * * * * 93 29 5632 * 1000 1000 * * 7796 1000 0 T 94 5349 * 5407 3398 * 4566 * * 3105 * * 5479 5179 * * 2375 1310 4252 * * 94 0 * * * * * * 7316 0 0 F 95 4743 * * 5068 2080 4220 * 3786 4703 3925 * * 4415 3793 * 3904 3357 3126 * 3879 95 0 * * * * * * 6743 0 0 E 96 4805 * 4469 1587 * * * 2698 * * * * * 2188 3766 3369 * 4560 * * 96 0 * * * * * * 6438 0 0 D 97 3420 * 2848 * * * * * 1708 4313 * 4548 * 2258 4570 * * 3986 * 4204 97 0 * * * * * * 5919 0 0 S 98 4230 * * * 3377 * 4080 * 4326 * 4099 2239 * 4152 * 1916 2736 * * * 98 0 * * * * * * 5835 0 0 T 99 3305 * * * * * * 2314 * 3357 * * * 4230 * 3949 1653 2608 * * 99 0 * * * * * * 5835 0 0 K 100 * * * 4382 * * * * 1868 * * 3057 * 3177 2119 2596 4270 * * * 100 0 * * * * * * 5716 0 0 K 101 * * * * * * * * 1174 * * * * * 2681 2020 * 2697 * * 101 200 2952 * 1000 1000 * * 4944 1000 0 C 102 * 265 * * * * * * * * * * * * * 2575 * * * * 102 0 * * * * * * 3709 0 0 A 103 1854 * * * * * * * 2575 * * * * 1833 * 2835 2891 * * * 103 0 * * * * * * 3709 0 0 D 104 * * 605 1546 * * * * * * * * * * * * * * * * 104 0 * * 0 * * * 2215 0 0 //