HHsearch 1.5 NAME d1nyra2 FAM FILE d1nyra2 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1nyra2.a3m DATE Mon Mar 8 16:53:11 2010 LENG 59 match states, 59 columns in multiple alignment FILT 109 out of 281 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.7 EVD 0.4639 2.5939 SEQ >ss_dssp CBBCCTTSCCCBCCTTCCHHHHHHTTCHHHHHHCCCEEETTEEECTTSCCCSCBCCCBC >sa_dssp CDADBEEDEDDEBEEDCBADDAADDDDDDCCEECECADBEDEEBECEDDADEDBDBDCE >ss_pred CEEECCCCCEEEECCCCCHHHHHHHHCHHHHHCEEEEEECCEEEECCCCCCCCCEEEEC >ss_conf 98998898798507998899989977864350077999988991052161678899989 >Consensus IxVxlPdGxxxxlpxgxTxxDxAxxIxxxlxxxxvxAkVngxxxdLxxxLxxxxxveii >d1nyra2 INIQFPDGNKKAFDKGTTTEDIAQSISPGLRKKAVAGKFNGQLVDLTKPLETDGSIEIV >UniRef50_Q2SSQ4(1-56:639) Threonyl-tRNA synthetase n=6 Tax=Mollicutes RepID=Q2SSQ4_MYCCT E=4e-06 s/c=0.94 id=26% cov=97% MKIKLLDGSIKEYNQEISVKDISLEIG---LKNVIGAKINDQLFDINYLIKNDCDLELI >UniRef50_UPI0001C373B6(2-59:646) threonyl-tRNA synthetase n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C373B6 E=4e-12 s/c=1.25 id=27% cov=100% IKLTLPDNSVREIESAQPAAEIVKGIGMGLYKSACCVKVNGEVKDLRTVIDSDCKFEV- >UniRef50_D2VQZ7(31-88:670) Predicted protein n=1 Tax=Naegleria gruberi RepID=D2VQZ7_NAEGR E=7e-06 s/c=0.89 id=29% cov=100% ITITIDKDVVKGKAFETSPYKIASDLSNDQSMDHLIAKINGKLWDMNRELEGDGRLEF- >UniRef50_A8BSG2(30-89:695) Threonyl-tRNA synthetase n=2 Tax=Giardia intestinalis RepID=A8BSG2_GIALA E=3e-05 s/c=0.83 id=19% cov=100% -TVTLPDGKTTEIPASFTALDVAKQVvkNKKVYSKFLAAVRDDEVIDMSARLGKTCKLEFL >UniRef50_D2QXI8(2-59:666) Threonyl-tRNA synthetase n=9 Tax=Bacteria RepID=D2QXI8_9PLAN E=2e-09 s/c=1.09 id=27% cov=100% LKVVLPDGSSKEFPGSVTPLEVAGSIGARLAKATLAADVDGKVVGVDTKLPESGEVKV- >UniRef50_A3DC91(9-67:557) Phosphoribulokinase/uridine kinase n=5 Tax=Clostridium RepID=A3DC91_CLOTH E=8e-07 s/c=0.93 id=22% cov=102% IKVVFPDNSEREVYEGISLQELSESCKNQYKSTIVAAKVNNDIKELSYRLNESCRVEFI >UniRef50_B8E1C3(388-446:727) (P)ppGpp synthetase I, SpoT/RelA n=2 Tax=Dictyoglomus RepID=B8E1C3_DICTD E=5e-21 s/c=1.71 id=28% cov=102% IYVFTPKGDVIALPQGSTPIDFAYAIHTEVGHRCRGAKVNGRIVPLNYILQNGDIVEII >UniRef50_C4WSV2(63-121:201) ACYPI002715 protein n=2 Tax=Acyrthosiphon pisum RepID=C4WSV2_ACYPI E=0.0001 s/c=0.80 id=30% cov=97% --IGVPENVTLSMNKGiSTPFHCAQHISEMLVKRSGLALIDEtHLWDMHRPLESDCELTF- >UniRef50_Q2LU33(387-444:501) GTP pyrophosphokinase / guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LU33_SYNAS E=5e-05 s/c=0.84 id=25% cov=88% -------GRITRLPDKATVLEY-LDAANFFASRSSVVKVNGKLASLDQTLRDGDSIEIV # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * I 1 * * * * * * * 384 * 3080 3745 * * * * * * 4615 * * 1 0 * * * * * * 5181 0 0 N 2 4674 * * 6005 * * 5628 5552 1873 5773 * 3558 * 3609 4146 4929 1828 * * 3741 2 0 * * * * * * 5242 0 0 I 3 6012 * * * 5513 * * 1436 * 4120 * * * * * * * 901 * * 3 0 * * * * * * 5340 0 0 Q 4 6374 * * 5542 3525 5295 * 5368 4352 3761 * 5633 * 4752 3874 4345 1507 3050 * 4059 4 0 * * * * * * 5340 0 0 F 5 * * * * 3466 5447 * 5416 * 824 4388 * * * * 5396 2408 4706 * * 5 33 5457 * 2585 263 * * 5439 1000 0 P 6 4699 * 5698 6349 * 6357 * * 3262 5025 * * 383 6982 * * 6908 * * * 6 0 * * * * * * 5682 0 0 D 7 * * 809 4385 * 7024 5595 * 2345 * * 5280 5633 4337 5311 6349 5424 * * * 7 5 * 8263 * * * * 5682 0 0 G 8 6223 * 5701 * * 321 * * 5019 * * 3475 * 6148 * 4968 * * * * 8 35 6361 6387 0 * * 0 5699 1000 1000 N 9 4395 * 3169 3155 * 6767 7297 * 2994 * * 6469 * 3616 3437 1569 5122 4760 * * 9 0 * * * * 0 * 5695 0 1639 K 10 4786 * * 3897 * * 6470 2354 5163 3213 6467 4959 6472 4101 5920 4613 3023 1940 * * 10 0 * * * * * * 5712 0 0 K 11 * * 6388 * 5155 * 5636 3036 1718 2982 4960 * 5651 * 2785 * 4565 3657 * 3863 11 0 * * * * * * 5712 0 0 A 12 3448 6069 4701 1322 * 4590 * * 4048 5803 * 4927 5937 5120 5520 3647 3344 4376 * 6811 12 15 6589 * 0 * * * 5717 1000 0 F 13 4331 * * * 2910 4011 * 4380 4719 1260 4082 * * 5500 * * 6639 3077 * 4574 13 0 * * * * * * 5746 0 0 D 14 2989 * 3670 3133 * 6418 * 7258 4582 * * 5110 1052 6983 5480 6864 4251 * * 5722 14 0 * * * * * * 5746 0 0 K 15 2501 * 4218 3147 4395 5484 4683 7025 2612 5788 6155 7010 4975 4353 3975 3300 5517 4964 6404 5309 15 46 4991 * 0 * * * 5749 2001 0 G 16 5032 * 4864 3113 * 771 5985 * 4599 * * 4908 4452 6718 * 4765 * * 4464 7407 16 138 3455 * 1133 878 * * 5749 3054 0 T 17 1740 * * * 6151 * * 4016 6879 5198 * 6845 6440 6136 * 1970 2199 3619 * * 17 28 5722 * 0 * * * 5756 1454 0 T 18 * * * * 6525 * * 5314 6649 * 6872 5892 5377 * * 2603 483 5363 * * 18 11 6999 * 0 * * * 5756 1000 0 T 19 2327 6012 * * * 4125 * 4768 * 4687 6757 * 1517 * * 6703 5545 2031 * 5798 19 0 * * * * * * 5756 0 0 E 20 3884 * * 4424 4053 5736 * 3268 5322 1563 3814 * * 4686 5563 * * 3168 6106 3600 20 0 * * * * * * 5756 0 0 D 21 * * 530 3050 * * 6038 * 5733 6418 7162 6232 * 3585 * 5245 6509 * * * 21 0 * * * * * * 5756 0 0 I 22 4921 4444 * * 1394 * * 2315 * 3395 * * * * * * * 2379 * 4254 22 14 * 6675 * * * * 5756 0 0 A 23 191 * * * * * * 5778 * 5734 * * * * * 5019 6094 4592 * * 23 0 * * * * 0 * 5742 0 1000 Q 24 4144 * 6259 3562 2931 6538 6412 * 2842 4185 6440 * * 3436 3837 5129 * * * 1760 24 14 6667 * 0 * * * 5756 1000 0 S 25 2241 * 3499 3593 * 4253 4783 6703 3649 5644 5698 6622 * 4448 3962 2149 5876 6106 * 5470 25 0 * * * * * * 5756 0 0 I 26 5812 5741 * 5798 * * * 803 * 2997 * * * 6012 * 6100 6098 2306 * * 26 21 6146 * 1000 1000 * * 5756 1000 0 S 27 5362 * 6164 * 6099 2228 1642 * 5737 5740 * 5202 5736 * 6418 1771 6725 * * 6001 27 17 * 6388 * * * * 5756 0 0 P 28 4439 7375 * 3247 * 5998 6968 6630 3168 5507 6123 3700 2615 4661 5320 2609 2613 5108 * * 28 25 * 5863 * * * 0 5742 0 1000 G 29 4687 * 2364 3440 4749 2237 6143 6372 3419 * 5220 5895 * 4615 3831 3017 5182 * * * 29 22 * 6078 * * * 0 5729 0 1862 L 30 * * * * 4730 6150 * 2571 5924 889 6967 * * 5644 6644 * 6364 2716 * 5550 30 9 * 7361 * * 818 1209 5701 0 2413 R 31 1421 * * * 7299 1346 * * 4710 6353 * * 5056 * 6476 4046 * 5188 6406 4825 31 0 * * * * 0 * 5752 0 1965 K 32 4946 * 2937 3797 7063 * 3738 * 1993 3733 4904 2775 * 6482 3209 4384 6725 * * * 32 0 * * * * * * 5756 0 0 K 33 3056 6972 4243 3550 6620 6418 3139 * 2917 6098 6572 3135 * 5140 2932 3856 3499 6640 * * 33 0 * * * * * * 5756 0 0 A 34 1408 2431 * * 4932 * 5733 4506 * 5223 4179 * * 6674 * 3997 3448 3803 * 5345 34 0 * * * * * * 5756 0 0 V 35 5451 4578 * 6098 * 6038 * 3147 4701 2252 7023 * * 5186 5301 4115 5068 1461 5441 6664 35 0 * * * * * * 5756 0 0 A 36 1838 5407 6642 5976 6664 1909 * 3283 5666 5341 * 6099 * 5710 6620 4437 7076 3268 * 4430 36 0 * * * * * * 5756 0 0 G 37 534 5436 * * 6498 3497 * 5840 * * 6504 * * * * 4541 5727 3379 * * 37 0 * * * * * * 5756 0 0 K 38 5523 * 6538 3848 * * * 4739 1279 3979 5620 6640 * 5967 2324 5057 5292 4339 * 4874 38 21 6097 * 3700 115 * * 5756 1060 0 F 39 6880 * * 6105 6506 * * 1846 * 3655 * * * * 6151 * * 750 * * 39 25 5887 * 2701 241 * * 5756 1307 0 N 40 * * 1661 6944 * 5384 * * * * * 694 6916 6464 6146 * * * * * 40 0 * * * * * * 5755 0 0 G 41 7045 * 4420 5423 * 552 5086 * 5837 * * 3246 * 5386 5131 5372 6464 * * * 41 56 4705 * 3335 151 * * 5755 2041 0 Q 42 5159 * 5735 1816 * * 5379 4317 2008 5437 * 5187 * 2893 3696 6372 5035 4584 * * 42 69 4423 * 2514 278 * * 5755 2070 0 L 43 4706 * 7409 5718 5850 * 7060 2699 4358 1561 4884 6026 3587 6097 5208 6482 4618 3116 6062 6160 43 0 * * * * * * 5755 0 0 V 44 2912 * * 5379 6329 * * 4767 4080 6201 5717 * * 5179 4650 5558 5186 1609 2218 4527 44 0 * * * * * * 5755 0 0 D 45 5310 * 1019 3927 * 4334 * * 5605 5668 * * 2351 6618 6276 3544 5572 * * * 45 0 * * * * * * 5755 0 0 L 46 5390 * * * 5283 * * 3364 6676 652 3146 * 4121 6879 * 7101 6613 6523 * * 46 0 * * * * * * 5755 0 0 T 47 4930 * 2639 4687 7101 5062 5323 6160 4325 5334 * 3064 6655 6372 3194 1995 3230 * * 6858 47 0 * * * * * * 5755 0 0 K 48 4236 * 5343 4582 6728 * 3905 * 3918 * * 6696 * 5272 1783 5196 2046 6817 * 2902 48 0 * * * * * * 5755 0 0 P 49 4387 6732 * 3963 * * * 5096 3871 4482 * * 1391 5868 3846 6108 5829 2081 * * 49 0 * * * * * * 5755 0 0 L 50 * * * * 4512 * * 2941 * 522 * * * * * * * 2950 * * 50 21 6087 * 0 * * * 5755 1000 0 E 51 5816 * 4017 1714 7445 4182 4869 * 2748 * 6610 3841 4937 3667 4051 4622 4257 6955 * 5713 51 0 * * * * * * 5758 0 0 T 52 5080 6383 2753 3113 * 3405 4791 * 3430 * 6842 2410 6813 5223 6647 2801 3753 * * 6480 52 0 * * * * * * 5758 0 0 D 53 4712 * 1394 5275 6096 1324 6813 * * * * 7017 * 5497 * 3958 5453 6011 * * 53 0 * * * * * * 5758 0 0 G 54 2715 1922 1691 4598 * 3838 * * * * * * * 3452 * 4698 6424 5538 * * 54 0 * * * * * * 5758 0 0 S 55 5702 * 5030 3293 * * 6382 3555 2955 5948 6136 4672 * 3445 4141 3047 2463 3299 * * 55 0 * * * * * * 5758 0 0 I 56 6686 6273 * 6647 6122 * * 2573 * 1614 * * * * * * * 1126 * * 56 0 * * * * * * 5758 0 0 E 57 4273 * 6369 804 * * 5157 * 3722 5691 * 3705 * 5242 3873 5324 4842 6803 * * 57 0 * * * * * * 5750 0 0 I 58 * * * * 3078 * * 984 * 2073 * * * * * * * 2855 * * 58 0 * * * * * * 5750 0 0 V 59 * * * * * * * 1188 * 1540 * * * * * * * 2203 * * 59 0 * * 0 * * * 5368 0 0 //