HHsearch 1.5 NAME d1nuba3 FAM FILE d1nuba3 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1nuba3.a3m DATE Mon Mar 8 23:04:02 2010 LENG 58 match states, 58 columns in multiple alignment FILT 88 out of 92 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.4 EVD 0.4420 0.5991 SEQ >ss_dssp CCCGGGSCCCSSGGGCEEETTSCEESSHHHHHHHHHHTTTSHHHHHCCEEEESSCCCC >sa_dssp EDDDEDBEECECEEDCAAADDEEDCDBCCCAEBCCCECEEDEEBEEBDCECEBCCEEE >ss_pred CCCHHHCCCCCCCCCCEECCCCEEECCHHHHHHHHHCCCCCCCCCEEEEEEECCCCCC >ss_conf 9874350988764512232797051744598786320034777867899660056759 >Consensus CxCxxxCpxxxxxxxpVCgsdgxTYxsxCxlxxxaCxxxxxkxxxxixixyxGxCkex >d1nuba3 CQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATKCTLEGTKKGHKLHLDYIGPCKYI >UniRef50_UPI0001927A5B(1576-1622:9981) PREDICTED: similar to Collagen alpha-5(VI) chain n=1 Tax=Hydra magnipapillata RepID=UPI0001927A5B E=3e-05 s/c=1.06 id=29% cov=83% -----SCPICKSVFKPVCASNGITFGNLCELKRFSC-----KKNQSISVVQEAPCAF- >UniRef50_UPI0001927A5B(2430-2478:9981) PREDICTED: similar to Collagen alpha-5(VI) chain n=1 Tax=Hydra magnipapillata RepID=UPI0001927A5B E=0.0005 s/c=0.93 id=38% cov=78% ------CPEIISP---VCANNGQTFLSECHLKEYAC-----KNGKNLEMISSGVCASL >UniRef50_Q6PVV9(155-213:366) SPARC n=1 Tax=Ciona intestinalis RepID=Q6PVV9_CIOIN E=6e-11 s/c=1.16 id=38% cov=100% CRCIVECDSSETDFR-VCGTDNNTYTSECELWRTKCIMKQNKAKgvQHLRLDYYGDCKEI >UniRef50_A7SV42(60-109:785) Predicted protein n=3 Tax=Nematostella vectensis RepID=A7SV42_NEMVE E=1e-10 s/c=1.35 id=27% cov=88% CSCVTTCPDHHKP---VCGSDGHLYINHCDLHRLACT-----TGRKISIDWDDTCREL >UniRef50_C3XQ32(945-994:1813) Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3XQ32_BRAFL E=0.0005 s/c=0.91 id=33% cov=88% CVCPTECKRGT-IETKVCGSDGQTFADECQMRVIACRYQ-----QDIKVAYAGPCK-- >UniRef50_UPI0001757FC2(63-110:558) PREDICTED: similar to AGAP007489-PB, partial n=1 Tax=Tribolium castaneum RepID=UPI0001757FC2 E=0.0007 s/c=0.94 id=31% cov=83% ---PKACSKDVDNEKNVCGSDGLTYPNRCHFEKARCV------NKNLTLAKRGPCR-- >UniRef50_Q1HPY3(118-181:317) Secreted protein acidic and rich in cysteine n=5 Tax=Neoptera RepID=Q1HPY3_BOMMO E=7e-10 s/c=1.02 id=25% cov=102% CNCIKDCPYETDSRRMVCTNFNETWQSDCEVYRQRCLCLDNsdqcrgPQYHHVQIEYYGTCREM >UniRef50_UPI0001924CF8(342-394:971) PREDICTED: similar to predicted protein, partial n=1 Tax=Hydra magnipapillata RepID=UPI0001924CF8 E=0.0008 s/c=0.85 id=28% cov=81% ------CPVSSN----VCGFNLVTYSSLCEMQKNFCNEFGNNSNTWPGMAYEGSCK-- >UniRef50_B7Q201(375-422:1045) Agrin, putative n=1 Tax=Ixodes scapularis RepID=B7Q201_IXOSC E=0.0008 s/c=0.93 id=33% cov=78% -------PPCEQVLRPVCGSDGKSYDSACHLRREACLGAD----EQLRVSYAGPC--- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * C 1 * 0 * * * * * * * * * * * * * * * * * * 1 0 * * * * * * 4197 0 0 Q 2 5525 * 5096 2583 * * 5175 4058 3544 5195 * 5131 * 2274 4541 5742 5818 1907 * * 2 0 * * * * * * 4197 0 0 D 3 * 258 3396 5465 * * * * * * * * * * * 4444 * * * * 3 0 * * * * * * 4197 0 0 P 4 3586 * * * * * * 3104 4028 3900 4841 * 1026 5030 5479 * 5610 3781 * * 4 0 * * * * * * 4230 0 0 T 5 4655 * 2785 2897 * * 5290 5658 4049 * * 5817 5560 4290 5271 2505 2110 4282 * * 5 0 * * * * * * 4268 0 0 S 6 2827 * 3198 2648 * 5608 4520 * 4067 5896 * 3725 6341 * 5434 2182 3433 5269 * * 6 26 5833 * 0 * * * 4431 1000 0 C 7 * 0 * * * * * * * * * * * * * * * * * * 7 197 * 2969 * * * * 4414 0 0 P 8 * * 5908 4830 * * * * 3112 5133 * * 498 5112 6604 5525 * 6302 * 5476 8 92 * 4019 * * 2919 205 4343 0 2484 A 9 4598 * 5557 2979 6264 * * 4516 4781 4683 5327 5465 2533 5504 3965 2548 4123 3378 * 4390 9 157 6159 3487 0 * 3106 178 4363 1000 2785 P 10 4546 2490 4742 2948 5443 3743 2865 5160 5980 5389 * 4000 4944 5757 6134 2820 5827 * * 5468 10 73 * 4339 * * 624 1510 4359 0 3203 I 11 6123 * 4797 3056 * 4430 4644 4130 3715 5942 * 5349 6381 * 4882 2527 2474 3038 * 4386 11 56 * 4714 * * 1585 585 4416 0 2665 G 12 5334 * 2012 4770 * 5252 6408 6400 2744 * 6372 3034 5350 5363 5503 2314 3550 * * * 12 37 * 5304 * * 1294 756 4429 0 2823 E 13 6452 * 2810 3193 * 6073 4982 4732 4628 4044 * 5655 2366 4711 5840 4245 3608 2763 * * 13 325 4151 2784 1774 499 291 2454 4413 2061 2409 F 14 4744 * 4849 3088 3090 * * 5525 * 3931 4283 * * 6090 2650 4156 5730 5743 * 1803 14 30 6259 7103 0 * * 0 4369 1000 2507 E 15 5745 * 2556 2135 6057 * * * 2536 4247 * * * 5157 2536 4736 3471 6022 * * 15 43 * 5094 * * * 0 4563 0 2503 K 16 5712 * 5746 5294 5608 * 6356 5286 2570 5367 3358 5876 1020 5212 4736 6181 * * * * 16 0 * * * * 87 4090 4543 0 2809 V 17 * * * * * * * * * 4979 * * * * * * * 46 * * 17 0 * * * * 0 * 4298 0 1000 C 18 * 0 * * * * * * * * * * * * * * * * * * 18 0 * * * * * * 4294 0 0 S 19 3491 5272 * * * 529 * * * * * * * * * 3065 3785 * * * 19 0 * * * * * * 4294 0 0 N 20 * * 4474 * 5429 * * * * * 5623 2613 * * * 1095 1989 5168 * * 20 0 * * * * * * 4294 0 0 D 21 * * 790 6318 5689 * 5252 * 5272 * * 2211 * 5951 * * 4637 * * 3940 21 0 * * * * * * 4294 0 0 N 22 * * * * * 612 * * 6386 5429 * 1974 * 5831 5349 6186 * * * * 22 0 * * * * * * 4294 0 0 K 23 5773 * * 3503 * * 3723 3778 2216 4181 4950 5372 * 2716 3752 * * 2488 * 6237 23 0 * * * * * * 4294 0 0 T 24 * * 5935 * 5677 * * 5800 * 3989 6925 * * 4846 7039 3595 458 6277 * 6795 24 0 * * * * * * 4294 0 0 F 25 * * * * 2749 * * * * * * * * * * * * * 3805 359 25 0 * * * * * * 4294 0 0 D 26 2567 * 2561 4615 * 3548 * 6524 4542 5015 * 4980 2595 4066 5513 2916 4662 * * * 26 0 * * * * * * 4294 0 0 S 27 * * 5138 * * 5794 * * * * * 1207 * * * 1083 4361 * * * 27 0 * * * * * * 4294 0 0 S 28 6022 * 3176 1958 * * 3022 5611 3385 3113 5253 * * 6635 3790 3398 5068 5831 * 6522 28 0 * * * * * * 4294 0 0 C 29 * 0 * * * * * * * * * * * * * * * * * * 29 0 * * * * * * 4294 0 0 H 30 6409 * 4136 1338 4969 * 2238 * 5715 4459 6289 * * 3227 4756 5506 * 5207 5533 * 30 0 * * * * * * 4298 0 0 F 31 5242 * * * 4227 * * 5086 * 616 2475 * * * * * * 4101 * * 31 0 * * * * * * 4298 0 0 F 32 6512 * 4245 3799 3848 6263 2080 * 2249 5619 5527 6851 * 4247 3233 * * 6860 6482 3242 32 0 * * * * * * 4298 0 0 A 33 3122 * * 6575 * 5067 5133 6263 3322 4269 4961 5555 * 3462 1505 5885 5536 3247 * 6502 33 0 * * * * * * 4298 0 0 T 34 2558 * 4696 3096 4195 * 3870 4048 4252 6521 4044 4465 * 3228 * 3744 3431 6400 * 4797 34 18 6347 * 0 * * * 4298 1000 0 K 35 1188 * * * 5427 5885 * * 3337 * * * * 5619 2450 2194 * * * * 35 0 * * * * * * 4298 0 0 C 36 * 0 * * * * * * * * * * * * * * * * * * 36 196 * 2980 * * * * 4298 0 0 T 37 4264 * * 4506 * 4501 * 3924 * 2338 4409 3751 * 2820 2703 * 3826 4717 4440 5325 37 328 * 2296 * * * 0 4156 0 2703 L 38 4586 2318 5503 3698 * 5228 3709 4281 * 1673 4076 * * 5425 * * 5777 4986 5560 4757 38 98 5519 4515 2000 415 * 0 4630 1000 3467 E 39 5112 * 3702 1942 4434 4763 * * 2102 4927 * * * 2698 5062 5466 4519 4844 * * 39 464 3742 2320 2585 263 * 0 4606 1504 3440 G 40 * * 2233 * * 1435 * 4464 * * * 4332 * 4408 4416 2829 3511 * * * 40 201 4661 3467 2585 263 * 0 3868 1000 3597 T 41 * * 4630 4109 * 3386 * * 3299 4273 * 1601 * * * 4170 1902 * * * 41 248 4411 3170 2585 263 1752 508 3806 1000 3579 K 42 4500 * * 4536 * * * * 948 * 4612 4087 2755 3831 * 3714 * * * * 42 105 5079 4629 2585 263 1669 545 4150 1000 3403 K 43 4873 * 5050 3415 * * * * 1465 4138 5112 3946 4669 3609 5080 4247 2992 * * * 43 99 5039 4801 2585 263 1560 598 4365 1000 3082 G 44 * * * * 5202 1074 * * 3631 * 5783 2574 * * 4946 5643 5247 * * 2716 44 105 3835 * 2122 376 899 1109 4437 1557 3229 H 45 3589 * * 3908 * * 3280 4683 2714 4665 * * * 2300 2417 3576 4562 * * * 45 0 * * * * 2220 349 4568 0 2290 K 46 * * 5441 3946 * * 1904 * 2199 5581 * 3453 5071 3608 4739 4063 5505 5715 3951 * 46 0 * * * * 0 * 4732 0 2219 L 47 5544 * * * * 5202 * 1394 * 1508 5029 * 4740 * * * * 2726 * * 47 0 * * * * * * 4708 0 0 H 48 * * 5588 3757 * 4208 1606 * 3866 * * 4914 * 3098 3750 3004 3567 5587 * * 48 0 * * * * * * 4708 0 0 L 49 * * * * 6095 * * 2036 * 1691 4154 * * * * * 5941 1477 * * 49 0 * * * * * * 4708 0 0 D 50 1831 * 1919 3157 * * 5192 4868 4012 4080 * * * 3962 6225 4547 * 4665 * * 50 0 * * * * * * 4703 0 0 Y 51 5568 * * * * * 3326 * 4072 * * * * 4616 6301 3499 * * 5136 623 51 0 * * * * * * 4703 0 0 I 52 4136 * 4101 2701 4647 * * 3647 3642 4833 5666 * 5568 3382 4209 4447 5953 5916 * 2141 52 0 * * * * * * 4703 0 0 G 53 5440 * 5136 * * 76 * * * * * * * * * * * * * * 53 0 * * * * * * 4703 0 0 P 54 2816 * 4538 3050 * * 4507 * 6385 5887 5249 5331 1508 * * 3633 3663 4597 * 5817 54 0 * * * * * * 4703 0 0 C 55 * 0 * * * * * * * * * * * * * * * * * * 55 0 * * * * * * 4703 0 0 K 56 3112 * 4898 3806 * * 4687 * 1125 * * * * 3867 2388 5468 * * * * 56 0 * * * * * * 4437 0 0 Y 57 * * * 811 2591 * 4691 * * * * * * 4328 * 3198 * * * 3905 57 0 * * * * * * 3825 0 0 I 58 * * * * * * * 1030 * 1785 2183 * * * * * * * * * 58 0 * * 0 * * * 3302 0 0 //