HHsearch 1.5 NAME d1no8a_ FAM FILE d1no8a_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1no8a_.a3m DATE Mon Mar 8 23:25:01 2010 LENG 78 match states, 78 columns in multiple alignment FILT 115 out of 8798 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 8.8 EVD 0.4307 0.7902 SEQ >ss_dssp CEEEEESCCTTCCHHHHHHHHHHHSCEEEEEESCSSCCCSCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEECC >sa_dssp CDADACDACEEBDDEDADECADECBDCEEADBCDEEEEEEDBCACADADEDEBAEDACEECEEEECEECDBEBDCEDE >ss_pred CEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEEEEECHHHHHHHHHHHCCCEECCEEEEEEEECC >ss_conf 939987875998989999997204874122222101357652258999057899999997289498887899999539 >Consensus grixVxnLpxxxxexxlxxxfxxxgxixxxxxxxxxxxxxxxxxxvxfxxxxxaxxaxxxlngxxxxgrxixVxxaxs >d1no8a_ GKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTS >UniRef50_B8BZC4(15-94:886) Potential RNA bindin g protein n=1 Tax=Thalassiosira pseudonana RepID=B8BZC4_THAPS E=0.0007 s/c=0.57 id=18% cov=100% -RVCIKNLPLSFDEGKLKAhLQSSIASliLTDCKLLKTKDGRSRKIAFVGFKSPEMAQQTVSYFHKSFALTSKLNVSLAFS >UniRef50_B9HVB3(182-255:894) Predicted protein n=14 Tax=Viridiplantae RepID=B9HVB3_POPTR E=0.0003 s/c=0.63 id=18% cov=95% --VYIGKIAPSVENDFMMSLLQFCGPVKSWKRPQDPaNGTPRGFGFCEFESAEGVLRALRLLTKFNIDGQELMLNV--- >UniRef50_C5LVA8(382-443:477) Arginine/serine-rich-splicing factor, putative n=4 Tax=Perkinsus marinus ATCC 50983 RepID=C5LVA8_9ALVE E=0.0001 s/c=0.77 id=16% cov=81% ------NLPEDMSWQELKQLGKDYGS--SCSFARTFREGRVCCGVLEYTDPAQVEEVLKSLDGRRIQGCP-------- >UniRef50_B3RX40(117-198:288) Putative uncharacterized protein (Fragment) n=1 Tax=Trichoplax adhaerens RepID=B3RX40_TRIAD E=4e-05 s/c=0.60 id=18% cov=100% -RLFISPIPKYMNKEEIYNKFSKLSDGLTEVIVYPDPdakDKIRGFAFLEYVDHKAATYARRKLitDTVSLSGKVINVEWAES >UniRef50_Q6FSA3(102-174:381) Strain CBS138 chromosome H complete sequence n=1 Tax=Candida glabrata RepID=Q6FSA3_CANGA E=3e-05 s/c=0.68 id=16% cov=94% --VWMTNYPPTFQQRDIRNIFKDHKiVALNVRLPSLRFNSNRRFAYVDLPNMESLDKAIQLLNGKDINGYKLVVK---- >UniRef50_Q8T772(41-119:253) Putative uncharacterized protein n=2 Tax=Branchiostoma floridae RepID=Q8T772_BRAFL E=9e-09 s/c=0.77 id=15% cov=101% GAVFVGHIPHGFFEPQVKRFFSQFGTVSRVRLARSKKTgGPKGYGYIEFECEEVAKVVAETMNNYLMFEKLLKCEFIPT >UniRef50_A2G7C0(8-79:485) Putative uncharacterized protein n=1 Tax=Trichomonas vaginalis RepID=A2G7C0_TRIVA E=3e-05 s/c=0.69 id=17% cov=92% --IYISDIPATYTEDKMREIFSKYGEIEQI-LLRKYRSVDFQYSFIQYKAKEQAEKAFDEANFMRLETSSIFIQ---- >UniRef50_UPI0000D55FE5(246-315:506) PREDICTED: similar to AGAP004982-PA n=1 Tax=Tribolium castaneum RepID=UPI0000D55FE5 E=3e-05 s/c=0.71 id=17% cov=90% --LYVGNLAQEITKED---MVKTYPTSRRIDIGYAKKMKYTRYAFVSFKNVSESIDAFKKTHSTQMYSKSLIVR---- >UniRef50_B7F8B0(38-115:116) Os01g0974600 protein n=5 Tax=Oryza sativa RepID=B7F8B0_ORYSJ E=3e-05 s/c=0.64 id=17% cov=100% -KLFIGGLSYDTNETALKDAFSQHGHIIQVKVICHPVTGKSKGYGFVKFASEDEAAAAlHKMGGEVIDGRNIRVHYANS # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 4844 0 0 K 2 * * * * * * * * 1325 * * * * 5193 1045 4518 5386 5553 * * 2 127 3574 * 354 2199 * * 7682 2596 0 L 3 * * * * 5265 * * 1789 6580 1380 * * * * * * * 1786 * * 3 0 * * * * * * 8835 0 0 L 4 6403 5175 6712 6698 1604 * 3691 3721 * 4564 6518 * * 6517 6606 * * 4618 4840 1694 4 0 * * * * * * 8846 0 0 V 5 6667 * * * 6495 * * 1587 * 3677 5116 * * * * * * 891 * * 5 0 * * * * * * 8885 0 0 S 6 4542 6881 4554 6074 6472 1620 6474 6738 2856 6852 * 4554 * 5622 3150 2781 4358 6889 6814 * 6 15 6616 * 2000 415 * * 8885 1000 0 N 7 * * 5478 * * 2038 7034 * 5202 * * 786 6582 5827 5168 4454 * 6832 * 6760 7 0 * * * * * * 8887 0 0 L 8 * 6484 * * 4341 * * 2219 * 693 6810 * 6786 * * * * 3643 * 6962 8 0 * * * * * * 8882 0 0 D 9 4136 * 3671 6484 6699 4745 4236 * * * * 4030 980 5933 5186 3118 5253 * * * 9 25 5877 * 0 * * * 8882 1760 0 F 10 5254 * 4172 5042 3206 6818 4880 6147 3572 4778 6971 5303 2663 4794 4378 4039 4024 5711 4733 2758 10 0 * * * * * * 8882 0 0 G 11 5593 * 2300 3807 5421 3493 4815 * 4618 6894 6822 2861 * 3661 4702 3055 3514 * 5908 5683 11 28 5685 * 2469 287 * * 8882 1838 0 V 12 3312 4925 * * 4592 6671 6786 2688 * 4019 3989 * * * * 4818 2321 2137 5143 4838 12 0 * * * * * * 8882 0 0 S 13 6658 * 2963 4973 * 5691 * 6552 3696 * * 3046 5981 5650 3869 3029 1522 5734 * 6957 13 10 7109 * 2000 415 * * 8882 1000 0 D 14 3243 6485 2888 1294 6751 * 7053 5349 3609 6899 * 6587 5835 4440 4994 4510 5849 * 4577 * 14 70 4774 6576 0 * * * 8882 2813 0 A 15 3702 * 2789 1942 6741 4637 5808 6748 3886 5816 * 4726 * 3919 3858 3384 4351 6518 * 5181 15 0 * * * * 0 * 8866 0 1000 D 16 4118 6594 1657 2269 6228 6630 4791 5382 4360 5799 5800 5973 * 3474 6065 4172 4861 5131 * * 16 0 * * * * * * 8893 0 0 I 17 * * * * 4188 * * 1930 * 1015 4461 * * 6608 * * * 2918 * * 17 30 5608 * 0 * * * 8893 1695 0 Q 18 4235 * 5665 3585 5679 4909 5730 5211 2327 4260 5310 5464 * 3476 2170 3898 5564 6780 5921 5643 18 20 6176 * 1767 502 * * 8893 1736 0 E 19 3917 * 2733 2122 6598 6571 5451 6320 3793 * 6845 3923 5342 2904 4131 3483 5021 * * 6059 19 42 5120 * 0 * * * 8893 2401 0 L 20 3825 6131 6750 4270 2629 * 4679 3092 5234 1668 4705 * * 6816 * * 5772 4569 7048 3649 20 0 * * * * * * 8893 0 0 F 21 5891 4602 * 6404 712 6113 * 5278 * 2956 3852 * * 6671 * 6845 * 4842 * 5169 21 12 6915 * 3170 170 * * 8893 1000 0 A 22 3846 * 4765 3102 5110 3665 * * 3210 5469 5822 4778 * 3177 3739 2194 4307 5053 * * 22 43 5097 * 1988 419 * * 8893 2455 0 E 23 4364 * 3604 3291 * 5158 5474 * 2475 * 6765 4268 3834 2788 3995 2996 4583 5707 * 6404 23 37 5829 7040 3248 160 * * 8893 1711 0 F 24 4568 4789 5207 6682 2073 5111 5114 3516 5971 3731 5761 5852 6598 6803 5609 5906 5797 4129 5893 2142 24 92 5784 4509 0 * 0 * 8887 1761 1000 G 25 4075 5185 5082 * 4464 881 5120 5359 7066 5660 6726 6439 5006 5700 5574 5067 5750 4795 * 4709 25 53 4799 * 614 1529 265 2577 8870 2886 3234 T 26 5869 * 3925 3071 * 3473 5011 4374 3227 5731 6866 5245 2746 4891 4017 3666 4139 3651 * 6891 26 24 6663 7288 1000 1000 * 0 8886 1000 1000 L 27 6947 5897 4680 7015 4906 6607 6510 1840 4670 3163 5038 5190 4322 7023 * 5728 5037 1973 * 5383 27 29 6559 6764 0 * * 0 8884 1000 1747 K 28 4323 6794 4796 2679 6748 5660 5622 4542 4307 3792 5918 6136 6714 3862 3244 3988 3779 2751 * 4839 28 97 4127 7038 2261 337 551 1655 8874 3810 2421 K 29 4113 * 3216 3249 4335 5152 4638 5003 3911 * 6504 4842 5698 4541 3164 2517 5235 4213 * 4677 29 35 5389 * 2432 296 1062 940 8885 2339 1677 A 30 3542 3250 6369 6607 4352 5238 5159 2556 6562 4534 5848 5984 6497 * 5648 4683 4500 1927 4939 5920 30 16 6516 * 0 * 0 * 8891 1000 1000 A 31 4040 6715 3858 3561 5264 6946 3688 4377 2864 4944 6404 4915 * 4061 3285 4947 3560 3423 5792 6607 31 32 6494 6571 3000 193 * * 8893 1000 0 V 32 * 5922 5584 4544 3910 * * 1987 4944 2449 3478 6696 6808 4704 5594 6776 6488 2465 * 5922 32 49 5339 6884 2930 203 * 0 8878 2407 1000 H 33 3913 6070 5566 * 4449 6727 4506 3254 3976 3876 4154 4401 3688 * 3428 4009 4702 3198 * 3673 33 12 * 6896 * * 959 1042 8864 0 1741 Y 34 5998 7073 3937 4533 5835 6757 4858 4518 3402 3953 5208 4823 3522 5200 2644 4077 3527 3821 5795 4920 34 23 5996 * 2195 356 939 1063 8877 1763 1689 D 35 5834 6452 2351 5994 3758 4496 4950 5194 3252 5284 4614 2890 4230 4962 4893 4607 4256 4766 * 5268 35 29 5631 * 2739 234 * 0 8879 1899 1000 R 36 4251 * 3883 3496 5362 5746 4334 7102 2935 4810 6916 3484 3821 4650 2836 4152 4180 5204 * 4715 36 95 4221 6630 518 1730 0 * 8879 3787 1000 S 37 4864 6586 3421 4009 * 3699 5150 6799 3167 6978 5285 3322 3841 4115 4109 3902 3129 4902 6805 4981 37 65 4848 6761 2816 221 0 * 8893 2924 1000 G 38 6992 6557 3600 4107 5319 2206 4529 5519 3879 6782 6937 3122 5027 4441 5190 3653 3271 * 6495 4803 38 63 4856 6881 585 1585 * 0 8882 2941 1000 R 39 4300 * 6503 3464 * 3693 4987 5838 2326 4544 6683 4064 3845 3345 2741 5189 5055 6731 7083 5841 39 65 4501 * 1334 729 923 1081 8875 3218 1732 S 40 3802 7050 5149 4846 4023 3903 3941 5169 3360 4419 5452 3710 3038 5378 6199 2471 4771 6954 6839 * 40 9 7316 * 0 * * 0 8882 1000 1000 L 41 5705 6709 5136 5924 4158 5519 5409 6685 2556 3802 5785 4458 5749 4294 2352 4032 3283 4117 * 5441 41 39 5244 * 2742 234 * 0 8882 2443 1000 G 42 3822 6035 * * 5247 1240 5788 6782 3072 5231 6756 5213 5768 5390 3872 4426 4518 6156 6009 5314 42 120 3651 * 815 1213 0 * 8882 4655 1000 T 43 4183 4706 4976 4297 2111 4271 5899 4132 5912 5244 5931 5685 * 4570 * 4296 4093 3621 * 2687 43 33 5464 * 1968 426 * * 8893 2431 0 A 44 1416 3448 6370 * 4996 1861 * 4616 6816 4733 * * * * 6569 6717 * 3334 * 6877 44 0 * * * * * * 8893 0 0 D 45 3665 7106 5797 6791 1415 4731 6922 4177 6919 4499 5827 5665 * * 5042 * 4439 4150 5378 2607 45 13 6842 * 3807 107 * * 8893 1000 0 V 46 3615 4220 * * 3831 6370 * 2424 * 3038 5138 * * * * * 6710 1259 * 5771 46 0 * * * * * * 8893 0 0 H 47 4151 5789 3690 1997 * 4855 7406 5818 3653 6791 6834 6726 * 4412 3770 5964 2375 3543 * 5800 47 12 6877 * 0 * * * 8893 1000 0 F 48 5824 6541 * 5875 1062 * * 5916 * 4443 3689 6753 * * 6789 * 5421 4441 6494 2079 48 0 * * * * * * 8893 0 0 E 49 2846 6962 3984 2846 4434 5205 5941 5962 3468 6914 4452 5082 4889 4733 4812 3423 4627 3717 * 4202 49 55 4733 * 1983 421 * * 8893 2844 0 R 50 6962 5831 2626 4188 6494 5116 6404 * 3338 5696 * 3364 * 6320 3804 2338 2349 6344 * * 50 13 6753 * 0 * * * 8893 1000 0 K 51 4949 6563 4104 2678 * 6630 3977 4470 4147 5403 5672 4507 2804 4737 3058 5324 3706 3839 * 6952 51 0 * * * * * * 8893 0 0 A 52 3461 * 3107 1733 * 5653 5285 5234 3461 6941 6607 4505 6344 3497 4521 3845 5942 5721 6715 6919 52 13 6782 * 0 * * * 8893 1000 0 D 53 3282 6139 1920 2573 6674 4507 6715 6837 * * 6671 4225 * 3354 * 2786 4618 5427 * 6855 53 11 7038 * 0 * * * 8893 1000 0 A 54 969 4823 6710 6789 5906 5225 * 5261 * 4776 3631 5621 6941 5123 * 3934 4440 4334 * 5050 54 27 5745 * 0 * * * 8893 1873 0 L 55 3541 * 3566 2696 6905 * 6404 5141 2774 3326 5508 4795 * 2717 4515 5928 4539 3884 * * 55 0 * * * * * * 8893 0 0 K 56 3183 * 4218 3958 5811 * 6782 4577 2428 4504 5512 3822 * 3812 2888 3895 5241 5453 * 4116 56 13 6789 * 0 * * * 8893 1000 0 A 57 774 3308 * * 4531 * * 4533 5059 5070 6763 * * * 6541 4601 6671 3366 * * 57 25 * 5844 * * * * 8893 0 0 M 58 4800 4590 * * 3940 * 5208 1952 4687 2314 3420 * 6834 5366 5541 * 5772 2699 * 6387 58 78 6554 4567 1585 585 0 * 8879 1000 1724 K 59 3930 * 3366 2179 * 6921 6706 6943 3042 4634 6761 3502 * 3573 3914 3006 4841 5532 * * 59 0 * * * * 0 * 8867 0 3459 Q 60 2966 5984 4933 2838 6842 4056 5356 5576 2658 4395 6952 5246 6765 3756 4139 3519 4574 5352 6915 5204 60 38 * 5266 * * * * 8893 0 0 Y 61 4253 5618 * 6910 2728 6426 6699 5273 6449 1217 3279 6735 6823 * * * 4765 4866 * 3525 61 32 5533 * 1331 731 0 * 8877 1869 2395 N 62 * * 2285 5770 * * 2605 * 6320 * * 1305 5834 3519 6811 3814 6634 * * * 62 61 4935 6834 1721 522 * * 8893 2547 0 G 63 7015 * 6986 4500 * 1015 5647 * 3522 * 5799 2724 6605 4912 3965 5104 5655 * 6318 * 63 39 5240 * 699 1381 0 * 8889 2421 1000 V 64 3908 5585 * * 4251 * 4041 4382 2292 5433 5251 5270 * 4092 3356 3694 3629 3608 6368 3981 64 13 6778 * 1585 585 * * 8885 1000 0 P 65 7025 * 4759 2725 5329 * 6764 3824 2769 4091 3672 4764 3713 4558 3948 4945 5951 3981 5313 4102 65 17 6451 * 0 * * * 8885 1000 0 L 66 5667 6742 * * 2599 * * 2220 * 1833 4653 5993 * * * * 6764 2995 4233 3891 66 25 5846 * 1000 1000 * * 8885 1691 0 D 67 4848 5663 2867 3462 5688 2635 4213 * 3668 3690 3898 3367 * 3927 4695 5151 6993 * * 5447 67 14 6740 * 1000 1000 * * 8885 1000 0 G 68 6492 * 2604 4937 6515 810 * * 5696 * * 3231 7030 6703 * 5092 5282 6340 * * 68 42 5134 * 1398 688 * * 8885 2387 0 R 69 5715 5896 7231 5544 * 6808 4250 * 2595 6742 * 4454 6744 4062 1268 3331 6690 4892 * 5218 69 38 5270 * 360 2178 * * 8878 2446 0 P 70 4403 6862 * 4210 6597 6476 4920 3778 3232 4442 6571 5152 2230 7055 2992 3765 4097 3609 * 6461 70 12 6878 * 2322 322 * * 8878 1000 0 M 71 6428 * * * 6539 * * 1670 * 1420 3447 * 5666 * * * * 2566 * 6718 71 0 * * * * * * 8873 0 0 N 72 6591 * * 4964 5981 * 3768 4818 2782 4665 5138 4223 * 3072 2460 4077 3858 3459 * 4435 72 0 * * * * * * 8873 0 0 I 73 4542 4927 * * 6815 * * 2380 * 3289 6413 * * * * * 6310 745 * * 73 15 6594 * 2322 322 * * 8858 1000 0 Q 74 5103 6732 4005 2204 6300 * 4569 * 3033 * 6511 4015 * 3361 2869 2667 5629 5609 * * 74 0 * * * * * * 8776 0 0 L 75 5836 * * * 3535 * 5066 3708 5233 1681 4623 * 4255 * 4366 6069 6427 2552 5136 3565 75 0 * * * * * * 8410 0 0 V 76 831 4274 6095 * 6040 6348 * 3626 6206 5998 * * 5940 * * 4246 6339 2869 * 6005 76 0 * * * * * * 8278 0 0 T 77 5323 * 3548 3661 5550 5409 4446 * 3762 5994 5937 4758 3441 4812 5749 3089 1747 6017 * * 77 0 * * * * * * 7871 0 0 S 78 3289 * * * * * * * * * * 3632 * * * 526 3027 * * * 78 0 * * 0 * * * 7256 0 0 //