HHsearch 1.5 NAME d1ngra_ FAM FILE d1ngra_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1ngra_.a3m DATE Mon Mar 8 16:24:00 2010 LENG 85 match states, 85 columns in multiple alignment FILT 101 out of 315 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.6 EVD 0.4312 0.6553 SEQ >ss_dssp CCBSTTSCSTTTHHHHHHSCTTHHHHHHHHTTCCHHHHHHHHHSSCHHHHHHHHGGGSTTCBHHHHHHHHHHTTCHHHHHHHHCC >sa_dssp EEDADDDEEECBCCACDCACEDBBDEAACCBEBEEEDCDDADECEDCBECABEDBBEDEEACCDCADDAADECEDCDAADBBEEE >ss_pred CCCHHHCCHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHCC >ss_conf 9724559889999999994867189999993999999999860655499999999844999899999999986958999996359 >Consensus xxlxxxlPxxxrxxlxxlLngxdWrxLAxxLgxxxxxIxxixxxxxptxxlLxxWxxxxxaTixxLxxxLxxixRxDvaexLxse >d1ngra_ GNLYSSLPLTKREEVEKLLNGDTWRHLAGELGYQPEHIDSFTHEACPVRALLASWGAQDSATLDALLAALRRIQRADIVESLCSE >UniRef50_P19838(806-890:968) Nuclear factor NF-kappa-B p50 subunit n=54 Tax=Euteleostomi RepID=NFKB1_HUMAN E=7e-05 s/c=0.57 id=24% cov=89% -----QLAEDVKLQLYKLLEipdpDKNWATLAQKLGLGILN-NAFRLSPAPSKTLMDNYEV-SGGTVRELVEALRQMGYTEAIEVI--- >UniRef50_Q5BSI9(1-82:90) SJCHGC04091 protein (Fragment) n=1 Tax=Schistosoma japonicum RepID=Q5BSI9_SCHJA E=3e-09 s/c=0.77 id=24% cov=93% ------LPVVTTQRLCKLLDSKesEWQKFAKHIGMER-YISYLKSQLSPTAVLLNIWETrsRDEPGVNDLKTIFCAMDRTDCANLLDIE >UniRef50_A7RW73(305-369:625) Predicted protein n=1 Tax=Nematostella vectensis RepID=A7RW73_NEMVE E=6e-05 s/c=0.75 id=26% cov=73% ---------------------GDWKSFAMQLGLTKKHVDTFgEPKTSPTENLFLYLSGINDTTsISQLRDHLKDMERNDVVRHL--- >UniRef50_C3YMN5(19-88:175) Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3YMN5_BRAFL E=7e-07 s/c=0.78 id=23% cov=75% ----------------------DWKDLAFFLGFSGTDVGNIGgrnyDDKSSCMDLLQEWATANGtdATIEVLMEALSNAGLRSVADGLKAE >UniRef50_UPI000186F355(74-138:491) hypothetical protein Phum_PHUM512560 n=1 Tax=Pediculus humanus corporis RepID=UPI000186F355 E=0.0003 s/c=0.71 id=23% cov=41% --------------------------------------------EDPCFNVLLAYVQYEKASIGNILKALHTMGRLDV------- >UniRef50_A7SU68(433-518:890) Predicted protein n=1 Tax=Nematostella vectensis RepID=A7SU68_NEMVE E=3e-07 s/c=0.66 id=20% cov=93% ----GKLPADERRAVCTKLNvkndigQNDFRMLGECIGLNLEKITLLDQRCEDPMHKIFIYLMHLGCSVKRLVYILLspNFKREDVADVL--- >UniRef50_UPI00019246B3(78-163:705) PREDICTED: similar to NLR family, pyrin domain containing 12 n=4 Tax=Hydra magnipapillata RepID=UPI00019246B3 E=4e-08 s/c=0.69 id=25% cov=93% --LKTALKEMKRMDLVRMADEfTNWRTLGRWLNIKESYLDMIDKDISKSDEkafsMLTKWLQMNcNPTLDELKTALKEMKRMDLVR----- >UniRef50_B0WNK2(15-114:435) Myd88 n=3 Tax=Culicini RepID=B0WNK2_CULQU E=0.0001 s/c=0.48 id=24% cov=69% ----------------------DWRGLFQAIPLENHYIAEVEADADPCKKIFELWKIKATkegkvPSLLELQNILGIIDRWDVVD----- >UniRef50_C3XR36(633-720:978) Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3XR36_BRAFL E=0.0001 s/c=0.54 id=25% cov=67% --------------------GRDWRSVAETLHLPFEFLQWMKQRGDPTRRMLDFLvAQHGGDSLRVLRDALAAIGHE--------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 2091 0 0 N 2 * * * 2245 * * 722 * * * * 2453 * * * * * * * * 2 0 * * * * * * 2823 0 0 L 3 * * 3156 * * * * * * 365 * 3167 * * * * * * * * 3 0 * * * * * * 4091 0 0 Y 4 * * * * 3193 * 3156 * 3016 1557 * * * * * * * * * 1667 4 0 * * * * * * 4091 0 0 S 5 3697 * * * 3597 2113 * * 3672 * * 2905 * * 3839 1992 3723 * * * 5 0 * * * * * * 4915 0 0 S 6 3127 * 3065 4164 * * 2711 * 2915 * * 3880 * 2258 * 4298 4307 * * 4422 6 0 * * * * * * 5209 0 0 L 7 * * 4788 * * * * 3827 * 660 3533 * * * * * 4698 2882 * * 7 0 * * * * * * 5984 0 0 P 8 4967 * * * * 4945 * * 4631 * * * 372 * * 3030 * * * * 8 42 5134 * 2322 322 * * 6061 1000 0 L 9 3812 * 5239 3900 2867 * * 5011 * 3091 * 4862 2169 4128 5345 3790 5375 4166 * 4076 9 0 * * * * * * 6193 0 0 T 10 * * 2128 4029 * 4190 4169 4764 * 3836 4831 * 5069 5314 3495 2152 5254 3992 * * 10 0 * * * * * * 6330 0 0 K 11 5106 4742 * 3486 * * * 5278 4027 2690 * * 5007 4365 * 5026 1804 2283 * * 11 0 * * * * * * 6330 0 0 R 12 * * * * 4046 4769 3763 * 4144 3444 4901 * * 3646 954 * 4290 * * * 12 80 4208 * 2589 262 * * 6464 1587 0 E 13 4202 * 3327 1912 5449 * 4353 * 4834 3364 5179 * * 2331 3235 5625 5405 * * * 13 0 * * * * * * 6471 0 0 E 14 4809 * 3735 1664 * * 5618 * 2857 4125 * * * 2715 2781 5004 5108 * * * 14 0 * * * * * * 6507 0 0 V 15 5031 * * * 5004 * * 2655 * 1130 * * * * * * * 1633 * * 15 40 5185 * 2000 415 * * 6507 1000 0 E 16 2719 1945 * 2794 * 4460 * * 5391 * * * * * 4324 2576 3733 4144 * 5288 16 0 * * * * * * 6507 0 0 K 17 3408 5286 * 3673 * * * * 2123 3956 5407 * * 3337 1947 3894 4830 5416 * * 17 33 * 5456 * * * * 6539 0 0 L 18 4322 * * * * * 4441 4077 3637 1236 3063 5180 * 5207 4337 5490 5155 5488 5636 5420 18 0 * * * * 0 * 6532 0 1000 L 19 5351 * * * * * * * * 122 5054 * * * * * 5222 * * * 19 101 4329 5782 2119 378 * * 6610 1634 0 N 20 5402 * 1807 4037 * 5515 * * * 5432 * 1162 5400 * 5371 5268 5482 4590 * * 20 647 1468 * 2306 326 * 0 6713 4866 1000 G 21 4588 * 6033 5151 * 666 4890 * 5099 6038 * * 4337 4620 4223 4424 * 5944 * * 21 170 3173 * 2164 364 * 0 6895 3794 1000 D 22 6069 5678 3886 5957 6274 3946 5410 * 2316 3954 * 2709 * 6666 2583 2911 4610 6430 * * 22 105 3834 * 2583 263 * 0 7017 2872 1000 T 23 6210 * 787 4069 * 4423 * * * * 6261 2541 * * 6762 4275 5000 * * 5383 23 101 3890 * 543 1673 0 * 7030 3620 1000 W 24 * * * * 4663 * * * * * * * * * * * * 5883 101 6451 24 0 * * * * * * 7057 0 0 R 25 5179 5076 5041 4010 * * 5788 6556 2242 5212 * * 5766 4593 1258 4390 4510 6189 * * 25 19 6220 * 1585 585 * * 7057 1000 0 H 26 4310 * 4098 2864 5845 2989 4705 5155 3693 3649 5114 7035 6474 4847 3299 4263 3751 4375 5751 6666 26 0 * * * * * * 7057 0 0 L 27 * * * * 3636 * * 5557 * 381 5931 * * * * * * 3433 6375 6768 27 0 * * * * * * 7057 0 0 A 28 346 * * * 5308 2606 * * * * * * * * * 6189 * 6602 * * 28 0 * * * * * * 7057 0 0 G 29 4568 * 3906 2901 5490 3135 6438 4699 4230 4421 6290 5304 5682 4528 2438 3296 4770 4406 * * 29 8 7521 * 0 * * * 7057 1000 0 E 30 4143 4961 * 2721 6884 * 3613 5831 2440 3516 * 5415 * 3445 2920 5079 5517 4964 6888 4611 30 12 6972 * 0 * * * 7057 1000 0 L 31 6546 5000 * * 4795 * * 3105 6220 448 4490 * * * * * * 6070 * * 31 44 5066 * 0 * * * 7057 1728 0 G 32 * * 3572 5140 * 638 4963 * 4589 5580 * 4702 6271 4314 5570 5174 * * * * 32 25 7017 6703 0 * * * 7057 1000 0 Y 33 * * * * 1697 * * 2748 * 1576 4843 * * * * 6472 6692 4256 * 3336 33 20 * 6186 * * 0 * 7050 0 1000 Q 34 * 5119 3721 3321 * 3851 * * 3647 5825 6780 4487 3055 5057 * 2532 2168 6147 * 6068 34 17 6454 * 0 * 0 * 7029 1000 1000 P 35 6124 * 2720 3509 4457 4120 4220 5199 4672 6109 6723 4375 3730 3962 3921 3749 3846 5049 6684 4027 35 99 5516 4483 1000 1000 * * 7057 1458 0 E 36 3542 * 2697 2858 6463 5910 4691 5021 5575 3556 6442 3680 4067 4429 5706 2743 4196 * * * 36 31 6704 6384 1000 1000 388 2086 7019 1000 2505 H 37 4908 * 1997 2297 4368 * 4554 * 3707 5626 * 5502 * 3233 5237 6491 4351 6706 * 3320 37 28 * 5702 * * 919 1086 7023 0 1650 I 38 6625 * * 6435 4811 * * 882 * 2606 5570 * * * 6502 * 5018 2532 * * 38 0 * * * * 566 1623 7029 0 2148 D 39 4222 5217 2176 2721 6493 5627 6687 * 4623 5932 5658 4127 4938 3436 2746 5209 4020 6839 * * 39 16 * 6527 * * * 0 7041 0 1000 S 40 3079 6457 6347 3991 6500 4530 4834 5660 5608 3044 5815 3642 6452 3767 4187 3760 3776 4773 5619 3281 40 0 * * * * * 0 7025 0 1695 F 41 * * 6452 * 2671 * * 1402 * 2302 4325 * * * 6173 5618 5471 3850 4243 5540 41 103 4137 6374 1473 644 0 * 7025 3146 1695 T 42 3689 * 2804 1976 6522 4017 * 6531 3693 6037 6151 5380 * 4922 3104 3140 5132 5655 * * 42 86 4393 6588 1699 531 * 0 7032 2585 1000 H 43 4211 4462 3474 3844 * 6481 4299 5691 3628 4105 7022 3169 5384 3098 4457 2935 3990 6629 * 6424 43 43 5086 * 345 2234 926 1078 7028 2172 1635 E 44 5204 5020 2526 2575 * 4558 4247 * 2740 * 5883 4984 * 2912 3954 4341 4219 * * 7191 44 124 3605 * 1993 417 * 0 7032 3791 1000 A 45 4098 4362 3494 3836 * 5226 5034 6173 2596 4491 * 3240 3389 6713 5071 4087 4039 6072 * 3680 45 176 3346 5940 2132 374 0 * 7043 3790 1000 C 46 5218 6876 3006 4536 6446 5600 5054 * 4499 6979 * 2446 5512 5307 3565 1555 * 6580 * 5894 46 115 3709 * 1976 423 * 0 7032 3542 1000 P 47 4888 4930 4799 * * 4720 5549 * 5269 * * 6332 803 3014 3855 5601 * 6256 * * 47 137 3469 * 2013 411 0 * 7032 3836 1000 V 48 2515 3349 * * 5914 5666 6264 4252 5536 * 4864 * 5233 * * 3666 1310 4043 * * 48 13 6785 * 2000 415 * * 7067 1000 0 R 49 4040 * 3590 2966 7032 5163 4792 4834 3678 3925 3527 6084 * 4696 2566 4443 6689 6694 * 3275 49 0 * * * * * * 7070 0 0 A 50 2608 5441 4279 2518 * 6398 4328 6878 3411 4974 5105 5133 * 3656 3000 4252 4608 5721 * 5915 50 88 4081 * 1796 490 * * 7070 2809 0 L 51 6398 5775 * * 6084 * * 3828 6117 1350 2035 * * * * 5690 5327 2398 * * 51 16 6533 * 2322 322 * * 7070 1000 0 L 52 * * * * 4784 * * 3740 * 267 4581 * * * * * * 5960 * * 52 0 * * * * * * 7070 0 0 A 53 4303 * 3074 2943 4886 4868 3808 5343 4613 4638 * 3453 * 3816 3389 4830 3828 4524 5088 5702 53 35 6634 6200 0 * * * 7070 1000 0 S 54 4001 * 3415 3113 6717 * 5931 4040 3364 2467 4925 5087 * 5043 4066 3834 5465 4537 * 3729 54 21 * 6127 * * 0 * 7057 0 1000 W 55 6360 * * * 5339 * * 5559 * 4387 * * * 4980 * * * 4701 425 3660 55 158 3267 * 760 1287 * 0 7059 4157 1000 G 56 3759 * * 2565 6927 3799 5683 4378 3411 4546 6543 * * 3323 3016 2851 4549 4714 * 5718 56 78 4598 6450 761 1287 0 * 7059 2438 1000 A 57 4609 6119 3865 3586 * 4923 4192 6262 3189 5011 4637 4178 * 2634 3945 4484 3074 4286 * 6040 57 156 3447 6544 1290 759 0 * 7050 4015 1000 Q 58 5648 6979 6909 4872 * 5676 3900 6391 2540 6415 5362 4424 4837 3266 1774 3949 4021 6481 * 7023 58 66 4909 6427 653 1458 0 * 7053 2682 1000 D 59 4067 * 3767 2487 * 5129 6747 * 4070 4829 6480 2683 3527 3261 4940 3251 4807 * * 5344 59 140 4124 4834 508 1752 0 * 7044 2932 1000 S 60 5641 * 2945 4209 6290 1586 4871 5512 5760 * * 3010 6449 5541 4009 3347 4104 * * * 60 387 2278 5113 1227 804 605 1545 7022 4628 2244 A 61 1343 4253 5177 5631 4903 3866 6034 5536 6448 4032 * 4760 4160 6331 * 3656 4831 4626 * 4879 61 70 4403 * 1559 598 427 1964 7049 2853 2552 T 62 4785 * 5754 * * 6477 6190 * 4243 * * 4056 5485 * * 2113 853 * * * 62 94 3980 * 1344 722 0 * 7058 3427 1000 L 63 5733 5461 6699 6816 * 6784 * 2521 * 1532 * * 6586 * 5432 4964 4584 1763 6799 * 63 60 4623 * 1456 654 * * 7068 2572 0 D 64 3954 * 3018 3036 6229 2801 4471 6688 3211 4987 * 4976 6434 2927 3826 4975 6699 5885 * 4823 64 21 * 6126 * * * * 7068 0 0 A 65 3434 * 3563 3298 * * 4221 6687 3323 4653 5187 3246 * 2978 3416 4449 4406 3800 * * 65 16 6527 * 1585 585 0 * 7058 1000 1000 L 66 * * * * 6126 * * 4597 * 165 6043 * * * * * * 4743 * * 66 0 * * * * * * 7068 0 0 L 67 3473 5102 6211 3957 4749 * 4773 2920 3339 2719 4548 * * 3960 3970 6763 * 3195 * 4129 67 0 * * * * * * 7068 0 0 A 68 4058 6351 2950 3145 * 5356 5455 * 3040 6513 * 4104 * 2926 3678 3666 3481 4818 * 4881 68 0 * * * * * * 7068 0 0 A 69 1314 4724 * 5132 4902 4809 6394 3247 5173 3207 4909 5666 * * 5613 5917 4483 4077 * 6043 69 0 * * * * * * 7068 0 0 L 70 * * * * 3874 * * 5010 * 202 4979 * * * * * * * * * 70 0 * * * * * * 7064 0 0 R 71 4511 5135 4762 3019 * 4324 7018 4953 2520 3730 5862 5587 * 3895 2874 4741 4335 4093 * 4619 71 22 6076 * 1000 1000 * * 7064 1000 0 R 72 3591 6348 2846 2107 * 5312 * 5248 2883 5242 * 4129 * 4007 4661 3601 4813 4815 * 7035 72 0 * * * * * * 7064 0 0 I 73 3495 3959 * * 5223 6206 * 1553 6330 2733 2042 * * * * 4649 * 5626 * * 73 0 * * * * * * 7064 0 0 Q 74 * * 2781 2262 * 1342 5281 * 4005 * * 3311 * 5224 5329 6482 * * * * 74 0 * * * * * * 7018 0 0 R 75 * 6508 * 7407 6169 * 4618 6328 4224 3227 4596 6227 * 5857 571 * * * * 6572 75 0 * * * * * * 6994 0 0 A 76 4074 6546 4112 3262 3947 4601 3673 6169 4815 3856 5163 4849 4304 5028 3267 4742 3997 4433 4074 6443 76 19 6271 * 0 * * * 6994 1000 0 D 77 6228 * 352 3813 * 6452 * * * 4740 * 6877 * 5647 6417 5015 * * * 6373 77 0 * * * * * * 6976 0 0 I 78 2310 4510 * * * 6319 * 2427 * 3067 * * 6136 * * * 6079 1295 * * 78 0 * * * * * * 6976 0 0 V 79 1181 6166 * * * * * 3450 * 3195 6207 * * * 6515 * 6375 1700 * * 79 0 * * * * * * 6953 0 0 E 80 * * 1681 1515 * * * * 4164 6288 5535 4758 * 5096 3814 4363 5191 5649 * 6086 80 0 * * * * * * 6954 0 0 S 81 3685 * 3371 3788 5907 5655 4892 3095 4025 2941 4205 * * 5243 5830 3061 5240 3190 * 5623 81 0 * * * * * * 6709 0 0 L 82 * * * * 4938 * * 1804 * 790 5893 * * * * * * 3540 * * 82 0 * * * * * * 6709 0 0 C 83 * 3023 4874 1992 5104 * * * 3698 * 4930 5460 * 4294 4087 2985 2923 4016 * * 83 0 * * * * * * 5796 0 0 S 84 3891 * 4977 4847 * * * 4516 4120 4948 4835 2884 * * 5082 1017 4709 * * * 84 0 * * * * * * 5482 0 0 E 85 * * 2172 476 * * * * 4078 * * * * * * * * * * * 85 0 * * 0 * * * 4682 0 0 //