HHsearch 1.5 NAME d1nfja_ FAM FILE d1nfja_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1nfja_.a3m DATE Tue Mar 9 01:05:56 2010 LENG 87 match states, 87 columns in multiple alignment FILT 47 out of 51 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.3 EVD 0.4467 0.7275 SEQ >ss_dssp CEEEECCSSCHHHHHHHHHHHHHTTCSEEEEEEETTHHHHHHHHHHHHHHHTCTTCEEEEEEEEEEECCCBTTBCCEEEEEEEEEEC >sa_dssp EDDBEBCEEECDDBADDABDCBEEEBEDAAACBDDECCEDADDAADCADEEDCEEBEDEEEDEDEDDCEDEEEEEDECDCBCBBABE >ss_pred CCEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEECCCCCEEEEEEEEEEEEC >ss_conf 938998286358999999998528995899999635024677899999984159815899970514663356845445589999959 >Consensus enxixigxKpvxnYVxxaxxllxxgxxxVviKAxGxaIskAVdvaeiikxRxxxxxxixxixIxsexxxxexgxxRxVSxIeIxLsk >d1nfja_ EHVVYVGNKPVMNYVLATLTQLNEGADEVVIKARGRAISRAVDVAEIVRNRFMPGVKVKEIKIDTEELESEQGRRSNVSTIEIVLAK >UniRef50_Q971T6(8-88:90) DNA/RNA-binding protein Alba 2 n=12 Tax=Sulfolobus RepID=ALBA2_SULTO E=3e-11 s/c=0.86 id=30% cov=94% -EILISRTKRVEDYVLDVIVMFNQGYDEVELKGVGNSIYKAVEVYNQLKDRLGDGIILEKADIGSE-----VKDRRRISYISIKLKR >UniRef50_D1HEP6(275-371:514) Whole genome shotgun sequence of line PN40024, scaffold_1.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D1HEP6_VITVI E=4e-20 s/c=1.02 id=30% cov=101% ENEIRITSQGRMrSYITYAMSLLQEkGSNEIVFKAMGRAINKTVTIVELIKRRivgLHQNTSIGSTDITDTWEPLEEGllpleTTRHVSMITITLSK >UniRef50_B7G8J5(40-123:167) Putative uncharacterized protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7G8J5_PHATR E=4e-14 s/c=0.94 id=31% cov=90% --------KP-RNYISYAMNLFSDGSPTIVLKAMGKAINKAVTIAEILKRKMflhqinsLSSVEMIDVYEPVEEGLDLVTNRRFVSCMKIILS- >UniRef50_B3T7Z0(133-217:222) Putative uncharacterized protein n=3 Tax=environmental samples RepID=B3T7Z0_9ARCH E=8e-16 s/c=1.00 id=39% cov=98% -NTIFIGIKPIMSYVTATLTQLAS-LPIVTIAGRGKRITQAIDVSQMIVKRMNEvGYEIGDVRISSDSLVSKDGKKRNVSKIEIDLK- >UniRef50_A7AMG5(31-106:169) Putative uncharacterized protein n=1 Tax=Babesia bovis RepID=A7AMG5_BABBO E=0.0001 s/c=0.63 id=34% cov=44% -------------YVNYARKLIDGGEPVVTLRGTGRAMSNVVETAEILRR------------------------------------- >UniRef50_A0E244(20-122:325) Chromosome undetermined scaffold_74, whole genome shotgun sequence n=5 Tax=Paramecium tetraurelia RepID=A0E244_PARTE E=4e-09 s/c=0.60 id=33% cov=100% -NVIRVANKAqLSTQVRKALWLLQGTRKEeqppildtIYITAIENAISKAVIIAEVVRRRvagLYQINKIQSVQISEEYEPLEEGLvkvsvTKNLASLQI KLTK >UniRef50_C5LKD4(10-108:221) Putative uncharacterized protein n=3 Tax=Perkinsus marinus ATCC 50983 RepID=C5LKD4_9ALVE E=2e-08 s/c=0.61 id=35% cov=85% -------------YVRYAIRLLQEdGRDTIKIVASGQAISKAVNVAETLKRRYRGLYQLTELSavELQETLDRNDGRrvrgekettTRMVSLATITMS- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * E 1 * * 2780 227 * * * * * * * * * * * * * * * * 1 0 * * * * * * 3164 0 0 H 2 * * * 2524 * 3718 4274 * * * * 781 * 4312 * 3920 * * * * 2 0 * * * * * * 3719 0 0 V 3 * * * 2877 * * * 1758 * * * * * * * 4735 2561 1469 * * 3 0 * * * * * * 3905 0 0 V 4 * * * * * * * 861 * 2938 * * * * * * * 1649 * * 4 0 * * * * * * 3952 0 0 Y 5 * * 4574 * 2384 * * 4663 * 2779 * 4604 * * 2369 * * 3043 * 2150 5 0 * * * * * * 3952 0 0 V 6 * * * * * * * 1046 * * * * * * * 3587 * 1210 * * 6 0 * * * * * * 3952 0 0 G 7 3985 * * * * 553 * * * * * * * * 3000 * 2939 * * * 7 0 * * * * * * 3952 0 0 N 8 4862 * 4580 4325 * * * 4695 1556 * * 1857 * 5730 5147 3316 3801 * * * 8 0 * * * * * * 3952 0 0 K 9 * * 4293 * * * * * 292 * * * * 3441 4634 * * * * * 9 0 * * * * * * 4035 0 0 P 10 4077 * * * * 2795 * * * * * * 399 * 4717 * * * * * 10 199 3562 4501 0 * * * 4043 1435 0 V 11 4815 * * 4463 * * * 2512 * 2516 * * * * 3613 * 3433 1341 * * 11 0 * * * * 0 * 4058 0 1000 M 12 * * 4796 3241 * * * 4111 * * 1139 * * * 3051 2645 3928 * * * 12 109 3783 * 0 * * * 4188 1182 0 N 13 3589 * 3055 3780 * * * * * * * 1001 * 4461 * 3241 3774 * * * 13 0 * * * * * * 4265 0 0 Y 14 * * * * * * * * * * * * * 3634 * 4516 * * * 191 14 0 * * * * * * 4337 0 0 V 15 4516 * * * * * * 2163 * * * * * * * * 4722 525 * * 15 0 * * * * * * 4337 0 0 L 16 * * * * 4952 * * 5069 * 1514 3725 3735 * * 3666 2575 2659 4955 * * 16 0 * * * * * * 4337 0 0 A 17 1476 * 4061 2775 * * * * 4489 * * 4904 * * * 4551 * * * 1672 17 0 * * * * * * 4337 0 0 T 18 1173 * * * * 3643 * 3935 * 4722 * * * * * * 2488 2358 * * 18 0 * * * * * * 4337 0 0 L 19 5108 * * * * * * 2319 6083 1726 2544 5079 * * 5795 * 3403 2837 * * 19 0 * * * * * * 4389 0 0 T 20 5831 * * * * 5079 * 3784 3642 3554 5104 4012 * * 4892 2497 1665 4165 4570 * 20 0 * * * * * * 4389 0 0 Q 21 4028 * * * * * 5117 3808 * 1184 3457 * * 2053 * 3916 * * * * 21 0 * * * * * * 4389 0 0 L 22 * * * * 1275 * * 4057 * 989 5447 * * * * * * * * * 22 0 * * * * * * 4389 0 0 N 23 3701 * 5795 4979 * 3220 * * * * * 1252 * 2073 5811 3460 * * * * 23 107 4401 5382 0 * * * 4389 1590 0 E 24 5071 * 3813 1289 * 3548 * * 3743 * * 2968 * 3621 5239 3408 * * * * 24 488 2574 3073 0 * 0 * 4381 2202 1000 G 25 * * 4879 * * 485 * * 4164 * * 5785 4863 * 5684 4529 3633 * * * 25 36 5330 * 0 * 0 * 4240 1315 1866 A 26 2354 * * 5806 * * 3680 3244 3862 5233 * 4300 * * 3385 2840 5456 2746 * 4332 26 23 5999 * 0 * * * 4410 1000 0 D 27 * * 1810 3400 * * * * 1725 * * 4194 2532 5457 * 4055 7145 * * * 27 41 5167 * 0 * * * 4496 1000 0 E 28 * 5595 4050 1328 * * * 5221 3100 * * 5079 * 5229 3832 3677 2839 4929 * * 28 54 4764 * 3000 193 * * 4496 1000 0 V 29 * * * * * * * 1282 * 5042 * * * * * * * 841 * * 29 0 * * * * * * 4496 0 0 V 30 5313 * * 3615 * * * 2394 3581 * * 5767 * * * 5795 2602 1390 * 4764 30 0 * * * * * * 4496 0 0 I 31 * * * * 4368 * * 1082 * 1325 * * * * * * * 3643 * * 31 0 * * * * * * 4496 0 0 K 32 5221 * * * * * * * 343 * * * * * 3993 5406 4764 4020 * * 32 0 * * * * * * 4496 0 0 A 33 438 * * * * 2126 * * * * * * * * * 4926 * * * * 33 0 * * * * * * 4496 0 0 R 34 * * * * * * * 3860 4926 * 1961 * * 5158 1293 4952 4046 3607 * 5035 34 0 * * * * * * 4496 0 0 G 35 * * * 4764 * 54 * * * * * * * * * * * * * * 35 47 4962 * 0 * * * 4496 1000 0 R 36 4299 * 5079 * * * * 5443 2290 5767 5595 2515 5042 3595 1564 5229 * * * * 36 0 * * * * * * 4496 0 0 A 37 793 * * 5035 5079 * * * * * 4962 3247 * * 4334 2771 * * * 5092 37 0 * * * * * * 4496 0 0 I 38 * * * * * * * 91 * * 4929 * * * * * * 5158 * * 38 0 * * * * * * 4496 0 0 S 39 * 5875 5035 * * 3905 5406 5375 * * * 3257 4926 4886 * 748 4334 * * 5522 39 0 * * * * * * 4496 0 0 R 40 * * * * * * * * 881 * * 3233 * 4334 1866 * 5229 * * * 40 0 * * * * * * 4496 0 0 A 41 336 * * * * * * * * * * * * * * 4914 2820 4929 * * 41 0 * * * * * * 4496 0 0 V 42 * * * * * * * 3151 * * * * * * * * * 172 * * 42 0 * * * * * * 4496 0 0 D 43 3869 * 1183 4195 4962 * * 4764 * * 4563 4161 * * * 4568 2572 5092 * 5061 43 0 * * * * * * 4496 0 0 V 44 * * * * * * * 2109 * 4106 * * * * * * 2445 925 * * 44 0 * * * * * * 4496 0 0 A 45 825 * * 5375 5092 * * * * * * * * * * 3181 5061 3299 * 2834 45 0 * * * * * * 4496 0 0 E 46 * * * 610 * * * * * * * 2532 * 3117 * * * 5199 5079 * 46 0 * * * * * * 4496 0 0 I 47 4118 * * * * 4478 * 1211 * 3693 3009 * * 5522 5092 * 4952 2469 * * 47 0 * * * * * * 4496 0 0 V 48 5313 * * * * * * 1679 * 1403 * * * * * * 4243 2110 * * 48 57 4678 * 0 * * * 4496 1095 0 R 49 5158 * * * * * * * 1084 5313 5229 * * * 1576 * 4926 3645 * * 49 0 * * * * * * 4496 0 0 N 50 * * 3648 3275 * * 4173 * 3251 4162 * 2113 * * 1564 5003 * * * * 50 24 5923 * 1585 585 * * 4422 1000 0 R 51 * * * * * * * * 2551 4181 * * * * 449 * 4589 * * * 51 349 2219 * 1585 585 * * 4381 2242 0 F 52 * * * 4589 2037 * * 5814 * 1397 2743 * * * * * 4759 3787 * 4094 52 160 3249 * 2680 245 * * 4381 1966 0 M 53 * * 5449 5042 5230 2520 2176 3485 * 2146 4673 3874 * 5082 4970 * * * * 4629 53 0 * * * * * * 4381 0 0 P 54 3914 * 3014 3704 * 4331 * * 4454 * 6062 3804 2829 1934 * 3183 4691 * * * 54 73 4335 * 0 * * * 4381 1203 0 G 55 * * 2742 5800 * 1809 * 2788 4759 4331 * 3310 * * * 2627 4237 * * * 55 113 3732 * 0 * * * 4381 1762 0 V 56 * * * * * * 5814 2068 * 3285 * 3619 * 5665 * * 2274 2250 * 3023 56 60 4609 * 0 * * * 4381 1000 0 K 57 3870 * 4397 1789 * * * 5421 2309 * * 5815 * 3310 4387 3344 5078 3735 * * 57 0 * * * * * * 4381 0 0 V 58 * 5065 * * * * * 1135 5334 2465 5201 * * * * * 4139 2410 * 4759 58 26 5814 * 1585 585 * * 4381 1000 0 K 59 * * 5089 2610 * 2245 * 5201 3311 * * * * 3950 5610 2841 4094 2438 * * 59 0 * * * * * * 4381 0 0 E 60 5610 * 1869 3239 * * * * 2895 * * 2929 * * 4579 1934 5032 * * * 60 0 * * * * * * 4381 0 0 I 61 4618 * * 5463 * * * 1160 * 4094 * * * 4958 * * 3240 1774 * * 61 0 * * * * * * 4381 0 0 K 62 * * 2573 3265 5334 4262 * 5463 2819 * * 4079 * 3841 3144 3119 5363 5065 * 3731 62 47 4970 * 1000 1000 * * 4381 1000 0 I 63 * * * 3221 * * * 459 * 3421 * * * * * * 4281 5610 * * 63 0 * * * * * * 4381 0 0 D 64 * 5442 3396 6325 * 1629 5463 * * 4058 * 5847 3731 * * 2953 2681 5032 * 4181 64 0 * * * * * * 4381 0 0 T 65 * * 2388 4629 * * * * 5665 5137 * * * 4970 * 1418 1891 5201 * 5847 65 60 * 4609 * * * * 4381 0 0 E 66 * * 3640 727 * * * * * * 4932 * * 3355 * * 3278 3611 * * 66 84 * 4142 * * * 0 4295 0 1000 E 67 * * * 1649 4511 * * 5233 3912 * 5253 * * * 4896 3026 4774 5371 2709 2755 67 65 * 4511 * * * 0 4238 0 1989 L 68 * * * 2033 * 3529 * 3573 * 1706 4773 * * * 4722 * * 2293 * * 68 172 * 3150 * * 1689 536 4238 0 2140 E 69 3644 * 2846 3637 * 4385 * 4099 4390 3892 5392 * 1793 4751 * 4763 4099 4853 * * 69 71 * 4385 * * 2156 367 4146 0 2475 S 70 4494 * 2656 * * 2797 * 4347 4185 2722 * 5101 * * 4581 2066 3513 * * * 70 0 * * * * 2389 306 4158 0 2239 E 71 4035 * 4189 1124 * * * * 3933 5016 * 3412 * 2500 4849 * * 5412 * * 71 0 * * * * 755 1295 4227 0 2064 Q 72 4529 * 2313 1761 * 3773 * 5053 4998 * * 5146 * 5238 3844 4925 4281 3093 * * 72 0 * * * * 1000 1000 4319 0 1470 G 73 * * * 5074 * 474 * * 2831 * * 5033 * * 5005 * 4377 * * * 73 362 2171 * 2322 322 * 0 4367 2107 1000 R 74 * * 3723 4232 * * * 3768 2291 4159 5770 5165 * 4375 1913 5174 2741 * * * 74 147 3370 * 2648 251 0 * 4367 1948 1000 R 75 5442 * * 2817 * 3810 * 4982 2594 * 4248 * * 4527 3078 4457 1706 * * * 75 63 * 4540 * * * * 4381 0 0 S 76 5702 * * * * * * 4124 2505 * * * * * 567 4871 5370 6181 * * 76 0 * * * * 983 1017 4375 0 1432 N 77 * * 5203 * 5191 * 2676 * 3842 5067 3747 1770 3997 5869 3657 3822 3442 * * * 77 0 * * * * 0 * 4389 0 1000 V 78 * * * * * * * 3673 * 4629 * * * * * 5032 4085 455 * 4005 78 0 * * * * * * 4381 0 0 S 79 2950 * * * * * * 4005 * * * * 3398 * * 487 * * * * 79 0 * * * * * * 4381 0 0 T 80 3322 5201 * * 3509 5137 * * 5228 4970 2801 * * * * 2980 2215 3003 * 3511 80 0 * * * * * * 4381 0 0 I 81 4970 * * * * * * 350 * 3251 4320 * * * * * * 5152 * * 81 0 * * * * * * 4381 0 0 E 82 4989 * 5508 1073 * * * * 3074 4141 * * * 4629 * 3166 3162 4958 * * 82 0 * * * * * * 4381 0 0 I 83 * * * * 4878 * * 50 * * * * * * * * * * * * 83 0 * * * * * * 4381 0 0 V 84 * * 4044 3620 4830 * * 3042 2707 4824 5677 * * 4009 4665 5227 2019 3076 * * 84 0 * * * * * * 4250 0 0 L 85 * * * * * * * 4189 * 400 3761 * * * * * * 3137 * * 85 0 * * * * * * 4250 0 0 A 86 4076 * * 4039 * * * * 2162 4521 * * * * 3148 1134 4495 * * * 86 0 * * * * * * 4209 0 0 K 87 * * * * * * * * 613 * * * * * 1531 * * * * * 87 0 * * 0 * * * 3842 0 0 //