HHsearch 1.5 NAME d1mr1c_ FAM FILE d1mr1c_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1mr1c_.a3m DATE Mon Mar 8 21:00:40 2010 LENG 97 match states, 97 columns in multiple alignment FILT 39 out of 43 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.3 EVD 0.4394 1.0034 SEQ >ss_dssp CCCEEEECSTTCEEEEECGGGCCSTTCCCEEETTTCCEECHHHHTTCCCSCCCSSCCCCSCCGGGHHHHCEECTTCCCTTHHHHHHHHHHHHHHHCC >sa_dssp EEADACAEBDBDBEABACCEDAECEECDAACACDCEEDCBADEAAECCDEEEEEEDEDEEDDCEDBCECADCBEDBEDEEDDDDCCDDBDDBBEDDE >ss_pred CCEEEEEEECCCCCEEEEHHHHCCCCCCCEEECCCCEEECHHHEEEEEECCCCCCCCCCCCCHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHCC >ss_conf 9618998626983206802552799898346411572536231163430278877421176853305330431237888708999999999997409 >Consensus ssFxVyHeCfgkCxGxfxPxxYxsxxaxCIxCxxCxxxFsPxkFvxHsHrxxexxtchwgfDsaNWRxyLxLaxdxxxxxxxxxlxxxxedvKxxFn >d1mr1c_ SHMRVYHECFGKCKGLLVPELYSSPSAACIQCLDCRLMYPPHKFVVHSHKALENRTCHWGFDSANWRAYILLSQDYTGKEEQARLGRCLDDVKEKFD >UniRef50_UPI00019265D3(167-260:640) PREDICTED: similar to nuclear oncoprotein skia n=1 Tax=Hydra magnipapillata RepID=UPI00019265D3 E=8e-33 s/c=1.50 id=41% cov=97% SSFQIYHECFGGCGGVFDAERYVKPQSLCIKCDTCKGLFSPPSFTTHSHSSFDNvHTCHWGFDTVRWRSYIMLVENQVTPD----LIKTWNDIKLKFN >UniRef50_UPI00015B57A6(263-359:733) PREDICTED: hypothetical protein n=1 Tax=Nasonia vitripennis RepID=UPI00015B57A6 E=2e-32 s/c=1.43 id=47% cov=99% SRFEVYHECFGKCKGIFDADAFVSEDSACVECLECGWKLSPKRFVRHVHSSLENSTCHWGFDSTNWRYYLLLSMKKEKHTQQtySKLDNFYSDLKKR-- >UniRef50_A8NJK7(236-322:347) SKI/SNO/DAC family protein n=1 Tax=Brugia malayi RepID=A8NJK7_BRUMA E=2e-22 s/c=1.22 id=45% cov=75% ----VMHDCFDGCTGILIPMLNCDEQ---IECTQCKLLFTGEKFVSHSHSMQQiQRICHWGFDSSNWRHYLHLPESYEND------------------ >UniRef50_C3Y1X5(259-304:779) Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3Y1X5_BRAFL E=7e-09 s/c=1.34 id=30% cov=38% -------------QGSLIPKYQTRSDSKCIMCKTCGIFFSPSAFLKHLH------------------------------------------------ >UniRef50_Q00G30(226-319:1223) Sno oncogene, isoform B n=43 Tax=Coelomata RepID=Q00G30_DROME E=1e-35 s/c=1.60 id=43% cov=98% -SFHVYHKCFGKCEGICTPDMYSYQKPTCIKCLECDGWFSPQKFVGHVHRKFENHTCHWGFDSRNWHDYLHVALDVENREKYQIILDQLKEVELK-- >UniRef50_C4QIV8(254-352:682) Ladybird homeobox corepressor, putative n=1 Tax=Schistosoma mansoni RepID=C4QIV8_SCHMA E=2e-29 s/c=1.31 id=30% cov=95% --FQVVHHCGWGCQGAFSPSRYTSSRAKCIRCYICQSYFSPNKFIFHCHSPKKSdnvslKSMYRHPDAANfnaWRRHLFLI----DPNPPLEVIYAWEDV KAMFN >UniRef50_A8XYQ9(255-301:720) C. briggsae CBR-DAF-5 protein n=1 Tax=Caenorhabditis briggsae RepID=A8XYQ9_CAEBR E=3e-08 s/c=1.27 id=39% cov=39% -----------------------------IKCRECMKMFTPADFILHHHYPRRNETLeHVGLNSAKW------------------------------- >UniRef50_UPI0001791B6B(204-296:361) PREDICTED: similar to c-ski protein n=1 Tax=Acyrthosiphon pisum RepID=UPI0001791B6B E=7e-27 s/c=1.30 id=37% cov=97% -SFEVFHDVFGKTRGVCMPELYTEKFSACIQCVECKALFAPQRFVNHIHRFTGTNSCHWGYKRENWKAYVKVSH---GHPDYAQVVNLFETFKEQID >UniRef50_C4PXE2(377-449:1388) Sno and ski oncogene family, putative n=2 Tax=Schistosoma mansoni RepID=C4PXE2_SCHMA E=8e-25 s/c=1.56 id=45% cov=75% SVIPVIHECFGRQLGLIYPNMYKEPYSKCIKCVTCCRYFSPEQFVGHTHTVTEVDNLnHWGFDSTNWRCYLRL------------------------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 2773 * * * * * * * * * * * * * * 228 * * * * 1 0 * * * * * * 2119 0 0 H 2 3985 * * * * * 4415 * 4099 * * * * * 3617 565 * 3756 * * 2 0 * * * * * * 2881 0 0 M 3 * * * * 276 * * 3161 * * 4002 * * * * * * * * * 3 0 * * * * * * 3462 0 0 R 4 3765 * 2366 2813 * * 4354 * 3118 5293 * * 4713 2518 3235 4571 * * 4663 * 4 0 * * * * * * 3462 0 0 V 5 * * * * * * * 4329 * * * * * * * * * 74 * * 5 0 * * * * * * 3509 0 0 Y 6 * * * 3440 3728 * 3644 4810 * * 4747 * * 5567 * 3684 * 3428 * 1036 6 0 * * * * * * 3509 0 0 H 7 * * * * * * 0 * * * * * * * * * * * * * 7 0 * * * * * * 3509 0 0 E 8 * * 3004 672 * * 4800 * 3122 * * * * 4032 4803 * * * * * 8 0 * * * * * * 3509 0 0 C 9 * 85 * * * * * * * * * * * * * * * 4130 * * 9 0 * * * * * * 3509 0 0 F 10 2168 * * * 730 4800 * * * 3440 * * * * * 5429 5411 * * * 10 0 * * * * * * 3509 0 0 G 11 * * 4747 * * 605 * * * * * * * * * * * * 1828 5411 11 0 * * * * * * 3509 0 0 K 12 * * * * * 1244 * * 1096 * * * * * 3185 * * * * * 12 0 * * * * * * 3509 0 0 C 13 * 432 * * * 3750 * * * * * * * 4810 * 3445 4130 * * * 13 0 * * * * * * 3509 0 0 K 14 * * 4848 3480 * 4263 * * 2684 4645 * * * 2666 1448 4847 3853 * * * 14 0 * * * * * * 3338 0 0 G 15 * * * * * 0 * * * * * * * * * * * * * * 15 0 * * * * * * 3338 0 0 L 16 3648 * 5482 * * * * 2381 * 1707 * 5112 * * * 2142 4847 3192 * * 16 0 * * * * * * 3338 0 0 L 17 * 2479 * * 648 * * 4645 * 2812 * * * * * * * * * * 17 0 * * * * * * 3338 0 0 V 18 5004 * 3136 * 5289 * * 2163 * 3112 4124 * * * * 4724 2963 2583 * 3319 18 0 * * * * * * 3338 0 0 P 19 3489 * * * * * * * * * * * 191 * * * 4847 * * * 19 0 * * * * * * 3338 0 0 E 20 2489 * 3492 1579 * * * * 5146 * 4519 3951 * 3450 * 2554 * * * * 20 0 * * * * * * 3338 0 0 L 21 4757 * * * 3452 * * * * 1471 3444 * * * 1356 * * * * 5146 21 0 * * * * * * 3338 0 0 Y 22 * * * * 4019 * * * * * * 4519 * 5146 * * * * * 207 22 0 * * * * * * 3338 0 0 S 23 * 4519 * 4147 * 5507 * * 4645 4848 * 1910 * * * 2267 2257 3056 * * 23 0 * * * * * * 3338 0 0 S 24 * * 4519 3361 * 5289 4140 * 4263 * * 5668 * 4141 5146 1139 3711 * * 3480 24 0 * * * * * * 3338 0 0 P 25 4976 * 4003 3633 * * * * 3592 * * * 1628 4268 * 1590 * 4847 * * 25 0 * * * * * * 3338 0 0 S 26 * * 2391 3984 4124 * * * 4268 * * 2871 * 3385 1719 4042 * * * 4645 26 64 * 4519 * * * * 3338 0 0 A 27 915 * * * * * * * * * * * 3936 4733 * 1448 * * * * 27 0 * * * * * 0 3493 0 1000 A 28 2775 * * * * * * * 1218 4339 * * 2680 * 4237 3776 3936 5205 * * 28 0 * * * * * 0 3493 0 1000 C 29 * 0 * * * * * * * * * * * * * * * * * * 29 0 * * * * 0 * 3088 0 1000 I 30 * * * * * * * 187 * * * * * * * * * 3043 * * 30 0 * * * * * * 3169 0 0 Q 31 * * * 2083 * * * * 1306 * 5061 * * 2281 3459 4927 * * * * 31 0 * * * * * * 3169 0 0 C 32 * 0 * * * * * * * * * * * * * * * * * * 32 0 * * * * * * 3169 0 0 L 33 3376 5490 4333 * 4732 4028 * 5438 5061 2118 * * * 6324 5235 2384 4142 3012 * 4711 33 0 * * * * * * 3169 0 0 D 34 * * 3459 1441 4939 * 6324 4711 * * * * * 3157 * * 2781 4748 * 2620 34 0 * * * * * * 3169 0 0 C 35 * 0 * * * * * * * * * * * * * * * * * * 35 0 * * * * * * 3169 0 0 R 36 * 3844 4322 6324 * 2026 4732 * 2731 * 5235 3602 * 4017 2453 3628 * * * * 36 0 * * * * * * 3169 0 0 L 37 3375 4049 * * * 2327 * 3992 5235 2154 2582 * * * 4586 4711 * 4356 4868 * 37 0 * * * * * * 3169 0 0 M 38 * * * * 2735 5260 * 4743 4419 2060 2494 * * 5438 * 4927 * * 4322 2208 38 0 * * * * * * 3169 0 0 Y 39 * * * * 184 * * * * 4023 * * * * * * * * * 4106 39 0 * * * * * * 3169 0 0 P 40 3527 4940 * * * * * * * * * * 4106 * * 486 3204 * * * 40 0 * * * * * * 3169 0 0 P 41 * * * * * 4565 * * * * * * 112 * * * 4940 * * * 41 0 * * * * * * 3169 0 0 H 42 4073 * * 3102 * * 4106 * 4868 * * 1761 4333 1536 * 5061 6324 * * * 42 0 * * * * * * 3169 0 0 K 43 5061 * 4679 * * * 4732 * 918 * * * * 3251 2462 4333 5159 * * * 43 0 * * * * * * 3169 0 0 F 44 * * * * 0 * * * * * * * * * * * * * * * 44 0 * * * * * * 3169 0 0 V 45 * * * * * * * 1469 * 5061 * * * * * * 4333 839 * * 45 0 * * * * * * 3169 0 0 V 46 * 3369 * * 1761 3448 * * 5061 5235 3372 4089 * * 4125 3153 4333 3551 * * 46 0 * * * * * * 3169 0 0 H 47 * * * * * * 0 * * * * * * * * * * * * * 47 0 * * * * * * 3169 0 0 S 48 4043 4711 * * * 5198 4679 4089 * 5061 * 4743 * 4919 * 996 3968 3180 * * 48 0 * * * * * * 3169 0 0 H 49 * * * * * * 0 * * * * * * * * * * * * * 49 0 * * * * * * 3169 0 0 K 50 * * * 4801 * * * * 2484 5802 * * * 5426 988 2522 4680 * * 5214 50 0 * * * * * * 3338 0 0 A 51 4591 * * * 4155 3834 5276 4054 4260 5918 3829 * 2785 4838 5015 2367 2614 4680 * * 51 0 * * * * * * 3338 0 0 L 52 5477 * * * 2926 3949 * * 4728 2289 * * 2389 3632 4111 4063 3125 * * 4840 52 38 5276 * 0 * * * 3338 1000 0 E 53 4652 * 2214 1078 * 4155 * * 4728 * * * 5773 3485 5214 5426 5682 * * * 53 66 4481 * 0 * * * 3338 1000 0 N 54 4145 * * * * 5429 * 4801 2977 * * 1326 * 4481 * 2414 3522 4680 * * 54 138 3453 * 1427 671 * * 3338 1483 0 R 55 5429 * 3101 5214 * * 2827 * 2303 * * 4155 * * 1338 4718 * * * * 55 175 * 3129 * * * * 3338 0 0 T 56 * * * * * * * 4373 3696 4678 * 4562 * * 4164 3223 835 * * 3840 56 206 * 2911 * * * 0 3350 0 1338 C 57 * 509 * * * * * * * 3475 3775 * * 4381 * * 4214 4938 * * 57 136 3475 * 0 * 0 * 3089 1538 1521 H 58 * * * * * * 470 * * * * * * 5319 * * * * * 1984 58 37 * 5289 * * * * 3338 0 0 W 59 * * * * * * * * * * * * 5204 5761 4011 * 3701 2918 550 * 59 40 * 5204 * * * 0 3328 0 1000 G 60 * * * * * 468 4640 * * * * * 5408 2230 * * * * * * 60 0 * * * * 1000 1000 3335 0 1196 F 61 * * * * 678 * * * * 5226 * * 1772 * * * * * * 4171 61 0 * * * * 0 * 3346 0 1000 D 62 * * 235 5001 * * * * 4155 * * 3993 * * * * * * * * 62 0 * * * * * * 3338 0 0 S 63 1720 * * * * * * * * * * * 4828 * 4155 858 4223 * * * 63 0 * * * * * * 3338 0 0 A 64 903 * 5015 3453 * * * * * * * * * * 4260 2643 3699 4223 * * 64 0 * * * * * * 3338 0 0 N 65 * * * 4840 * * * * 3075 * * 335 * * 4223 * * * * * 65 522 1720 * 1585 585 * * 3338 1697 0 W 66 * * * * * * * * * * * * * * * * * * 0 * 66 0 * * * * * * 3338 0 0 R 67 4812 * * * * * 3381 * 4130 * * * 5292 * 348 * * * * * 67 0 * * * * * * 3509 0 0 A 68 3285 2968 3945 * * * 4747 * * * * 3783 * * 1713 2424 5046 5117 * 4496 68 0 * * * * * * 3509 0 0 Y 69 * * * * * * 1713 * * * * * * * * * * * * 525 69 0 * * * * * * 3509 0 0 I 70 * * * * * * * 2522 * 634 3008 * * * * * * 4130 * * 70 0 * * * * * * 3509 0 0 L 71 * * * * 4800 * 2388 * 1917 1926 4329 * * 3452 3594 * 5567 * * * 71 28 * 5685 * * * * 3509 0 0 L 72 * * * * * * * * * 538 * * * * * * * 1683 * * 72 115 * 3710 * * * 0 3503 0 1000 S 73 1349 * * * * * * 3867 * * * 4897 3587 * * 1436 * 4250 * * 73 333 * 2280 * * * 0 3455 0 1350 Q 74 4273 * 4207 2631 * 4078 3784 * 3399 3607 4168 * * 2753 2506 4506 * * * * 74 164 4840 3784 1585 585 3353 149 3272 1000 1614 D 75 * * 996 4416 * 4743 * * 2847 * * 3020 * * 4342 3282 * * * * 75 83 * 4160 * * 3741 112 3178 0 2097 Y 76 * * * 4325 * 4934 3292 * 2290 * * * 4089 2086 * * * 3540 * 2117 76 68 * 4446 * * 2437 295 3178 0 2070 T 77 * * 4768 1811 * * * * 4309 3485 * 4519 3051 4728 * 3746 2619 3334 * * 77 0 * * * * 741 1317 3183 0 2304 G 78 5241 * 2264 * * 1848 4986 * 4317 * * 2649 4706 * * 3729 3652 5052 * 5432 78 0 * * * * 1285 762 3401 0 1671 K 79 5084 * 3990 3970 * 3064 2609 * 2839 * * * 3401 * 2863 * 2973 * * 4032 79 110 * 3772 * * 954 1048 3413 0 1571 E 80 4482 * 2523 2010 * * * * * * * 3388 2535 * * 2843 3783 4237 * * 80 311 4985 2622 3459 138 478 1827 3325 1000 1677 E 81 4517 * 2371 2238 * * 5148 * 2254 5523 * * 2544 3338 * 5577 * * * * 81 43 * 5076 * * * 0 3246 0 2291 Q 82 5454 * 4094 2682 * * 4322 * 3964 4749 * * 2941 2216 * 3545 4361 * * 2923 82 145 3386 * 733 1328 * 0 3239 1444 2335 A 83 1994 * 2496 2347 * * * * 3737 3568 * 4147 * 4085 4749 3980 * * * * 83 52 4829 * 3000 193 1404 685 3239 1000 2335 R 84 * * 2757 2384 * * * 4527 1535 * * * * 2697 3586 * 4859 * * * 84 68 4450 * 0 * 0 * 3282 1000 1791 L 85 * 4849 * * * * * 3481 * 722 * * * * * * * 2312 * 3877 85 0 * * * * * * 3377 0 0 G 86 * 5734 3439 4433 4989 2920 * 2899 3318 3963 * * * 3806 * 4018 4677 2263 * * 86 0 * * * * * * 3377 0 0 R 87 * * 4641 4714 4603 * 2259 3970 2399 5578 * 2642 * 3093 3613 * * * * 4705 87 46 * 4989 * * * * 3377 0 0 C 88 1391 5290 * * 4168 * * 3199 * 2382 * * * 4597 * 4562 3089 * * 4811 88 0 * * * * * 0 3372 0 1000 L 89 * * * * 3964 * * 4018 * 1403 * * * * * * * * 1183 4168 89 64 * 4529 * * * 0 3372 0 1000 D 90 * * 2348 925 * * * 3935 3387 * * 4121 * * * 4096 * * * * 90 0 * * * * 1016 985 3331 0 1409 D 91 * * 779 2130 * * * * * * * 4642 * 4950 * 4310 3924 * * * 91 0 * * * * 0 * 3339 0 1000 V 92 * * 4092 * 3981 * * 3640 * 2179 2907 * * * * * * 1173 * * 92 0 * * * * * * 3377 0 0 K 93 * * * 4641 * * * * 59 * * * * * * * * * * * 93 0 * * * * * * 3377 0 0 E 94 1123 * * 1570 * * * * 4305 2705 * * * * * * * * * * 94 0 * * * * * * 3377 0 0 K 95 * * * * * * * * 1291 4059 1571 * * 3323 3400 * * * * * 95 0 * * * * * * 3375 0 0 F 96 * * * * 120 * * 3645 * * * * * * * * * * * * 96 0 * * * * * * 3128 0 0 D 97 * * 1261 * * * * * * * * 779 * * * * * * * * 97 0 * * 0 * * * 2988 0 0 //