HHsearch 1.5 NAME d1mnmc_ FAM FILE d1mnmc_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1mnmc_.a3m DATE Mon Mar 8 15:52:28 2010 LENG 77 match states, 77 columns in multiple alignment FILT 108 out of 2083 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.6 EVD 0.4526 1.2774 SEQ >ss_dssp CCCCEEECTTSCEEESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC >sa_dssp EEDEDDDDEEEEDCDECEEEEDECDDCBDCCACDBAEDDDEEBECEECBBDEBCDEBECDDECADDCADDCCEEDDE >ss_pred CCCEECCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC >ss_conf 92020124232117898868899699999999999997185898898999999999779987944874644344129 >Consensus gxxxnxxxxxxxxxxxxxkxxxrxxxxqxxxLxxxfxxxxxxPyPsxxekxxLaxxxgLsxxqVxxWFxNxRxrxKx >d1mnmc_ GLVFNVVTQDMINKSTKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT >UniRef50_B8C2Z7(2620-2691:3070) Predicted protein n=1 Tax=Thalassiosira pseudonana RepID=B8C2Z7_THAPS E=4e-07 s/c=0.78 id=24% cov=91% -------TESTDESPTKTSKQLGFPQETKDYLWAWVRSHTSNPFPSKCEKDKIMKDTKLgleDVRRLESWFTRARKKIK- >UniRef50_Q22810(200-267:278) Homeobox protein 41, partially confirmed by transcript evidence n=1 Tax=Caenorhabditis elegans RepID=Q22810_CAEEL E=3e-07 s/c=0.83 id=20% cov=79% -------------SSPPKKTKSPFTEHEIAVMMALFEINKS---PNHEEVQKLAVQLNLGYRSVANFFMNKRAKER- >UniRef50_Q0UJS9(279-348:488) Putative uncharacterized protein n=1 Tax=Phaeosphaeria nodorum RepID=Q0UJS9_PHANO E=2e-05 s/c=0.72 id=23% cov=90% ----NVRPQGLGKRSLTRKGEHR--QCNTSVFREWLHINGLRSYPSPDQIAELAAIAGVTVKQARNALSNFRSR--- >UniRef50_C3ZLZ0(153-221:1101) Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3ZLZ0_BRAFL E=7e-12 s/c=1.04 id=24% cov=91% -VIFHPSSPDMDNR--KRRARTVFSAQQLKRLEEEY---KKCSYPDKERRQTVAEATGLTEGCVRIWYQNRRAKD-- >UniRef50_UPI0000EBF023(21-96:165) PREDICTED: similar to TGIF-like protein on the X, partial n=1 Tax=Bos taurus RepID=UPI0000EBF023 E=7e-07 s/c=0.73 id=25% cov=84% ----------LVSQKGKRKQTGYLPTESVKILHDWLYEHWFKAYPSKVEKCMLSEHISLSFPQISNSFINACRR--- >UniRef50_A2E450(78-152:170) Knotted, putative n=1 Tax=Trichomonas vaginalis RepID=A2E450_TRIVA E=8e-07 s/c=0.73 id=23% cov=95% --IIRIVENEMKNENPPRKspINDRISSQNRQILFNWLFAHQQNPYPKLADFIDLEYKTGLGKKRIQTFFINYRAR--- >UniRef50_A3B6V0(61-130:515) WUSCHEL-related homeobox 12 n=6 Tax=Poaceae RepID=WOX12_ORYSJ E=6e-07 s/c=0.79 id=23% cov=84% -------------RNPEPKPRWNPRPEQIRILEGIFNSGMVNPPRDEIRRIRLQLQEYGQVGDANVfyWFQNRKSRTKN >UniRef50_P01366(64-126:126) Mating-type protein A1 n=5 Tax=Saccharomyces cerevisiae RepID=MATA1_YEAST E=0.0001 s/c=0.75 id=23% cov=83% ----------HIKKEKSPKGKSSISPQARAFLEQVFRRKQS---LNSKEKEEVAKKCGITPLQVRVWFINKRMRSK- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 3206 0 0 L 2 3160 * * * * 2849 * * * 2391 1867 * * * * * * 1813 * * 2 0 * * * * * * 3890 0 0 V 3 3708 * 3841 * * * * 2555 * * 3756 * * 3628 * * * 919 * * 3 0 * * * * * * 4276 0 0 F 4 * 4157 * * 1576 * * 3659 * 3111 3971 * * * * 3137 * 3059 * 3105 4 0 * * * * * * 4689 0 0 N 5 4783 * 3856 4676 * * 3862 * * * * 792 4056 4783 4415 4975 4878 * * * 5 0 * * * * * * 5516 0 0 V 6 4913 * * * * * * 2805 * 4341 3856 * 4008 * 3616 2951 5088 1415 * 5164 6 0 * * * * * * 5741 0 0 V 7 5391 * * * * * 4390 3218 * 2402 5544 4747 4492 5417 3830 3934 4372 1749 * 5391 7 0 * * * * * * 6114 0 0 T 8 4611 * 5665 4396 5499 5507 * 5255 5538 3954 5587 4487 4795 * * 1689 1980 4333 5594 * 8 0 * * * * * * 6371 0 0 Q 9 4882 * 4965 2816 * * * * 3494 5978 4297 5257 4135 1365 4994 3666 4184 * * * 9 62 5884 5318 2000 415 * * 6371 1000 0 D 10 3698 * 1672 2163 * 4909 * * 4203 5385 * 3088 * 5617 * 4374 3955 5408 * * 10 0 * * * * 0 * 6439 0 1000 M 11 4726 4531 4798 4255 5885 6049 2748 4488 4939 3025 3264 5582 4374 5135 * 4147 2834 4281 * * 11 43 5813 6426 1585 585 * * 6615 1000 0 I 12 4161 * 3313 6231 6224 3622 5665 3609 4693 2795 3512 4641 6273 5875 5903 4028 4178 3158 5753 5076 12 0 * * * * 0 * 6659 0 1000 N 13 * * 3113 3690 * 5634 3818 6198 4349 3040 * 2230 * 3439 4084 3786 3397 * * * 13 0 * * * * * * 6644 0 0 K 14 4742 * 5331 3983 5945 4244 6228 5812 2669 5906 6586 6562 6401 3477 2136 2194 * 5825 * 6149 14 19 * 6265 * * * * 6744 0 0 S 15 3948 * 3918 5652 * 5219 6593 6256 2897 5293 * 2427 3560 4312 3866 2238 5487 * * 6037 15 16 * 6515 * * * 0 6841 0 1000 T 16 4840 * 6485 6538 6856 2995 6436 5662 3593 3675 6309 3552 2743 3762 5413 2968 2911 6444 * * 16 0 * * * * 939 1064 6862 0 1509 K 17 5593 6865 6425 3544 * 6257 5772 * 2225 * 6648 3010 2062 5474 2788 4351 5048 6980 * * 17 49 5358 6831 1936 437 * 0 6929 1704 1000 P 18 5917 * 5980 4540 * 5332 6732 6460 3066 6241 * 5519 1996 4217 2540 3071 2953 * * * 18 40 6596 5875 1585 585 * 0 6862 1000 1592 Y 19 4145 6334 * 6510 5537 5895 4196 * 1272 * 6036 4496 6690 4464 2386 4754 6895 6757 * 4251 19 93 4313 6345 1918 443 912 1094 6860 3358 2582 R 20 5002 * 5456 5002 * 4954 * 5267 2178 6299 6779 6757 3728 4117 1475 4855 4206 6442 * 6454 20 65 5734 5306 0 * 1590 582 6878 1499 2029 G 21 4099 * 5692 5573 * 3159 6888 6065 2597 6856 5431 4829 5417 4435 1696 3897 3631 * * 7035 21 18 6304 * 2807 222 653 1457 6879 1000 2813 H 22 4413 * 6530 5069 6912 5154 3854 6666 2562 4997 5770 4398 4891 6088 2456 3619 3050 4328 5471 5293 22 76 4542 6897 1538 609 956 1046 6894 2804 1593 R 23 5847 6041 * 5270 5267 6219 * 6389 3095 4378 * 4046 4633 5110 1055 5289 6027 4241 * 5636 23 179 3529 5044 896 1112 855 1162 6876 3749 1533 F 24 5195 * 6465 * 1465 5558 5725 3732 4350 2450 4729 * 4971 * 6836 * 4340 5468 * 3303 24 70 5182 5640 1772 500 * 0 6853 2062 2173 T 25 6266 6720 5558 * * 4991 5372 * 4798 5412 6684 4953 2386 6781 5361 1916 1692 * * * 25 17 * 6442 * * 2117 378 6852 0 2979 K 26 4963 * 3515 3709 6460 4416 7235 6059 2055 * * 5689 2454 3238 4536 3935 4367 5749 * * 26 0 * * * * 776 1266 6889 0 2683 E 27 4454 5627 3457 1520 6527 6677 3637 6736 4303 4530 * 7080 5907 3759 3788 4176 5702 6520 5346 6664 27 0 * * * * 934 1069 6881 0 1644 N 28 3182 * 5965 4793 6527 6545 7053 * 5281 6381 6384 3907 6617 1127 * 3687 3156 5692 * 6049 28 0 * * * * 0 * 6882 0 1000 V 29 4685 * 6424 6947 6416 * 7025 3073 3673 1958 6418 6224 * 5072 2758 5561 3165 2922 * * 29 21 6121 * 1000 1000 * * 6896 1100 0 R 30 3472 6756 3483 3155 * 5139 4449 6696 3156 7102 5918 4349 6544 3758 2357 3776 4426 7037 * 5442 30 0 * * * * * * 6896 0 0 I 31 3525 * * 4471 3982 6777 5835 1961 4814 3155 6782 * 6399 4028 4770 6774 3964 2765 * 4866 31 37 5319 * 1671 544 * * 6918 1583 0 L 32 6435 * * * 5805 * * 5398 * 181 4153 * * * * * * 6912 * * 32 14 6669 * 2000 415 * * 6942 1000 0 E 33 * * 4849 1497 5558 * 4441 6692 2307 5792 4963 4231 * 4195 3025 5640 6480 * 6307 7097 33 0 * * * * * * 6942 0 0 S 34 3511 * 3170 3509 * 4688 5111 * 3209 5511 6955 3536 * 3670 3213 2781 4348 5056 * 6613 34 22 * 6040 * * * * 6942 0 0 W 35 3433 7016 * 4119 4388 * 4785 4375 6015 3493 4760 6190 * 5839 5749 4740 4752 4693 1603 3708 35 14 6715 * 1585 585 1000 1000 6942 1000 1632 F 36 * * * 6404 871 * * 5548 6224 2541 6085 * * * * * * 5212 5676 2528 36 99 6444 4185 2807 222 * 0 6937 1000 1000 A 37 2722 6770 4774 2728 5717 6513 4238 4388 4198 2862 5689 4640 * 4086 5101 4828 4767 5465 * 3526 37 99 5235 4661 1000 1000 2439 294 6909 1724 2997 K 38 3058 * 5772 2425 5673 * 6361 4487 3040 4013 6952 5861 * 3042 3580 3422 4156 4806 * * 38 84 * 4138 * * * 0 6909 0 3691 N 39 * 5716 4216 * 5324 4774 1816 * 5838 * * 1501 * 4674 5442 4248 3748 * * 5518 39 277 6382 2618 1000 1000 1209 817 6782 1000 4449 I 40 6191 * 6524 5907 4797 4716 5186 4349 2358 3774 4770 4151 * 3068 3238 3225 5295 4595 4721 6614 40 278 * 2515 * * 2004 414 6715 0 5064 E 41 6136 * 2978 4435 4611 6115 3787 6456 3937 3300 4513 2900 5968 4206 4262 3936 4824 4046 5357 5577 41 421 6060 2071 0 * 2673 246 6675 1000 5426 N 42 3629 4209 3733 4643 * * 3713 * 5262 * * 1236 4903 5929 5233 5746 4395 * 5014 4336 42 63 5655 5445 1000 1000 1891 453 6499 1000 5547 P 43 3136 5635 * * * 4669 * * * * * 6008 481 5942 * 4314 5132 * * * 43 69 * 4423 * * 1013 987 6762 0 5153 Y 44 * 6273 * * 3179 * 3836 * 3754 6389 * 5703 5275 6188 4407 * * 6296 * 732 44 0 * * * * 292 2447 6814 0 4801 L 45 5066 * * * * * * 4918 * 3121 6312 * 389 * 5476 6809 * * 6084 * 45 0 * * * * 1560 598 6903 0 2222 D 46 7308 5839 2444 4699 * 5783 * * 4868 5793 6473 3379 * * 6961 1624 2037 * * * 46 0 * * * * 0 * 6902 0 1702 T 47 3388 * 4383 3084 5980 5073 5827 6044 2689 4548 6696 6437 3210 4485 3159 3324 5019 4836 * 6513 47 0 * * * * * * 6943 0 0 K 48 3337 6308 2911 2122 7354 4598 4968 4398 3340 4716 * 7069 5553 4595 4571 3733 4630 5226 * 7014 48 0 * * * * * * 6943 0 0 G 49 5525 * 3132 1315 * 5655 5724 * 4413 5543 3745 * * 3114 4032 * 4228 4306 * * 49 0 * * * * * * 6943 0 0 L 50 6337 5744 * 6825 5569 * * 3428 1489 3863 5490 * * 5865 1695 6497 6290 5186 * 5532 50 0 * * * * * * 6943 0 0 E 51 3130 5707 3473 2289 6980 * 3772 3839 3396 5683 6810 4937 * 4351 3720 5318 6504 3705 * 5199 51 0 * * * * * * 6943 0 0 N 52 4152 * 5395 2108 6513 * 6063 4377 3324 4382 5061 3999 * 3202 3103 3903 4752 5165 * 5907 52 0 * * * * * * 6943 0 0 L 53 * * * * 5831 * * 2291 * 570 3947 * * * * * * 5239 * 6221 53 0 * * * * * * 6943 0 0 M 54 1013 4580 * 4821 6727 4372 * 5868 * 5856 3969 * * 4816 6610 2442 6718 5429 * 6797 54 0 * * * * * * 6943 0 0 K 55 3532 * 4393 2546 * 5382 4818 5437 2960 3730 * 4062 * 3918 2895 3777 5302 5912 * 4925 55 0 * * * * * * 6943 0 0 N 56 3082 * 4917 2916 6748 6415 5707 3757 2688 4006 5078 4923 * 2860 3638 4911 4722 5732 * 6137 56 0 * * * * * * 6943 0 0 T 57 3590 4337 * 5498 6076 6806 * 2925 * 1969 * 6648 * * * 4185 1770 4311 * 5276 57 37 5299 * 2378 308 * * 6943 1947 0 S 58 6013 5787 5038 6481 * 871 4910 * 4531 7158 6582 2828 * 5194 * 3666 6981 * * 5094 58 27 5766 * 3573 127 * * 6943 1634 0 L 59 * 5237 * * 6912 5498 * 3031 * 793 3096 * * * * 5585 * 3488 * 5902 59 18 6308 * 1585 585 * * 6943 1000 0 S 60 * * 3761 3701 * 4527 6613 * 4828 * * 4673 3293 4642 6165 1830 1816 * * * 60 0 * * * * * * 6943 0 0 R 61 5175 * 5865 2654 4730 7086 * 4668 2956 4388 5400 5178 2827 4931 3599 5753 6716 3013 * 3723 61 0 * * * * * * 6941 0 0 I 62 5254 7100 7128 3694 5699 5000 5129 6090 1870 6049 * 6546 5706 5715 2048 3984 3095 5640 * 6855 62 0 * * * * * * 6941 0 0 Q 63 4560 6779 4535 4337 * * 6548 7009 4111 * * 5459 * 928 3460 5313 6812 3441 * 6135 63 17 6412 * 4524 64 * * 6941 1000 0 I 64 4377 * * * * * * 1426 * 3314 * * * * * * * 1061 * * 64 0 * * * * * * 6941 0 0 K 65 4827 6976 3610 4068 * 5386 * 4756 2334 * 6224 3699 * 2697 2682 3773 4371 4875 * * 65 0 * * * * * * 6941 0 0 N 66 6804 * 6645 6494 5687 6219 5797 2400 4877 6162 6857 1815 * 6126 5603 4210 3358 2304 * * 66 32 5496 * 1000 1000 * * 6941 1000 0 W 67 5805 * 6388 * 3925 * * * * * * * * * * 5706 * * 236 4803 67 0 * * * * * * 6941 0 0 V 68 * * * * 335 * * * * 3285 4823 * * * * * 6092 5876 * 4737 68 0 * * * * * * 6941 0 0 S 69 4676 4139 6793 * 6241 4378 5755 3067 4411 * 4872 5500 * 1433 5599 3221 3916 5613 * 6995 69 0 * * * * * * 6864 0 0 N 70 * * 5261 4828 * 6670 4312 * 6771 * * 273 * * 5430 6577 * 6900 * * 70 0 * * * * * * 6859 0 0 R 71 2596 * * 6695 5091 * 4911 * 2490 * 6151 6715 * 3831 1591 * 3245 5464 * 5041 71 10 7216 * 2000 415 * * 6858 1000 0 R 72 6388 5731 6570 * * * * * 4819 * * * * * 115 * * * * * 72 62 4580 * 1420 675 * * 6846 2722 0 R 73 2257 5879 6528 6588 * * * 6643 3396 5620 4447 4487 * 3418 1945 3498 3961 * * 5020 73 0 * * * * * * 6817 0 0 K 74 5066 * * 5766 * 5734 * * 1734 6626 * 5603 * 6168 826 6397 6396 * * * 74 0 * * * * * * 6808 0 0 E 75 3920 * 2780 2411 * 5212 6030 4711 4486 2937 3234 4438 * 4349 * 4396 4014 6447 5478 * 75 0 * * * * * * 6364 0 0 K 76 * * * * * * * * 520 * * * * * 1723 * * * * * 76 0 * * * * * * 6328 0 0 T 77 2126 * * * * * * * * * * 1593 * * * 1830 2661 * * * 77 0 * * 0 * * * 4693 0 0 //