HHsearch 1.5 NAME d1miua4 FAM FILE d1miua4 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1miua4.a3m DATE Mon Mar 8 20:43:17 2010 LENG 112 match states, 112 columns in multiple alignment FILT 23 out of 27 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.9 EVD 0.4674 2.0848 SEQ >ss_dssp CCCGGGCCSSSCCEEEEEEEEEEECCCBCCEEEEEEEESSSSCCCEEEEEESCCHHHHHHCCSSCEEEEEEECCCCCCCSSSCCSCEEEEEEEEEEEEEC CCHHHHTTTCCC >sa_dssp EDCADDCECEEEDBDBABAAABCCDEDDEDBBCADAABCEEEDDCACAABDECDEECDEDBDDBDCACACDAADBDECEEEEEECBCABCDEECECDDCE CDEEDCEEBCEE >ss_pred CCCHHHHCCCCCCEEEEEEEEEECCCCEEEEEEEEEEECCCCCCEEEEEECCCCHHHHHHHHCCCEEEEEEEECCCCCCCCCCCEEEEECCCCCEEEECC HHHHHHHHHCCC >ss_conf 9761220047984122577776116422577877754235667538999817968899998538556886541267567777633899548752247632 768888874087 >Consensus xlpxxslxxxggxvgcxdxxxxrxypxxxtVwKlrixdxrkxekxxxLSIWRPxeDLxslLxEGxxxxIynLtxSxsRxxsxxxxvQLTatKxTryxxLx xsxexLxqxyqp >d1miua4 PLPLSSLFSDGGNVGCVDIIVQRVYPLQWTVWKLRVTSYKKKEKSALLSIWRPSSDLSSLLTEGKRYRIYHLAVSKSKSKFERPSIQLTATKRTQYQQLP VSSETLLQVYQP >UniRef50_UPI000186EB1E(168-237:441) hypothetical protein Phum_PHUM580740 n=1 Tax=Pediculus humanus corporis RepID=UPI000186EB1E E=5e-07 s/c=0.79 id=37% cov=46% ---------------------------------------------SLLSIWNPNEETSTLFAEGKGMSLVNVTVSnfQTRFKSG---IQINASRSTRFQS I------------- >UniRef50_A7SNN6(280-385:491) Predicted protein (Fragment) n=1 Tax=Nematostella vectensis RepID=A7SNN6_NEMVE E=3e-25 s/c=1.08 id=35% cov=83% PLPLGSLFADGGAVGCVDVVVLRTYPLEFmeklsdgtTVFRCARAEDRESNH-YHMEQERAREDLLSRVQReieseaGQTDSLPKLSKRMRRSCSTRDVM KLTGGKE------------------- >UniRef50_A5JSV3(639-721:841) Breast cancer susceptibility protein 2 (Fragment) n=4 Tax=Tetraodon nigroviridis RepID=A5JSV3_TETNG E=7e-24 s/c=1.34 id=42% cov=74% ------------------------------VWRLSIADFMEKPGSVYqLNIWRPPSELQSLLKEGCRYKVYNLTTTDSKKQGGNTTVQLSGTKKTQFEDL QASEELLSTYFQP >UniRef50_A5A3F7(3161-3244:3978) BRCA2 (Fragment) n=3 Tax=Strongylocentrotus purpuratus RepID=A5A3F7_STRPU E=5e-20 s/c=1.17 id=37% cov=65% ----------------------------------------KGQQTTFLTLWRPPDDLVTELVEGKRFRISSVATSAGRNMPGMCPVQLASTRATRYEELP AASLKLQRSYIP >UniRef50_Q16FF5(1401-1466:1721) Putative uncharacterized protein n=2 Tax=Aedes aegypti RepID=Q16FF5_AEDAE E=8e-16 s/c=1.28 id=38% cov=57% --------------------------------KMRITDARKPEKVLLLSIWRPPEELCDLFQEAKVLEIRNATANGIRN----GEVQLTAGKNSSFKPL- ------------ >UniRef50_A0NBL4(1724-1793:2037) AGAP007032-PA n=1 Tax=Anopheles gambiae RepID=A0NBL4_ANOGA E=4e-14 s/c=1.13 id=33% cov=57% --------------------------------KVRLMDRAQPVRSFVLSIWRPTDDVRGLLQEQAYVEFGNVTANGKKNN----DVQLTAHKATTYRRV- ------------ >UniRef50_B3S4K0(3-75:271) Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3S4K0_TRIAD E=6e-13 s/c=1.03 id=38% cov=61% --------------------------------------------DCFLTIWKPSDEILEMLNEGNLLRIYHLTASPNRFQNTSSSAQLSTTRITKFIPIT tyrVAIERLYierQVYQ- >UniRef50_UPI0000DB7522(413-477:722) PREDICTED: similar to Breast cancer type 2 susceptibility protein (Fanconi anemia group D1 protein) n=1 Tax=Apis mellifera RepID=UPI0000DB7522 E=4e-06 s/c=0.81 id=34% cov=52% ------------------------------VLKIRVI---EEETSAILSVWSPSEEVLDILKEGNYVSVSTVMPSAKRGN----ELQLTTNRNT------ ------------ >UniRef50_UPI0001792434(1496-1561:1732) PREDICTED: similar to BRCA2 n=1 Tax=Acyrthosiphon pisum RepID=UPI0001792434 E=8e-10 s/c=0.98 id=40% cov=45% -------------------------------------------KAALLTIWNPSEDVTEILnksTEGQCCTLHHITTNG----FMNGELQLSANKNTRF- --------------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * P 1 * * * * * * * * * * * * 0 * * * * * * * 1 0 * * * * * * 1528 0 0 L 2 * * * * * * * * * 0 * * * * * * * * * * 2 0 * * * * * * 1680 0 0 P 3 * * * * * * * * * * * * 0 * * * * * * * 3 0 * * * * * * 1680 0 0 L 4 * * * * * * * * * 688 2553 * * * * * * 2258 * * 4 0 * * * * * * 1680 0 0 S 5 * * * * * 3022 * * * * * * * * * 501 2553 * * * 5 0 * * * * * * 1680 0 0 S 6 * * * * * * * * * * * * * * * 0 * * * * 6 0 * * * * * * 1680 0 0 L 7 * * * * * * * * * 0 * * * * * * * * * * 7 0 * * * * * * 1680 0 0 F 8 * * * * 924 * 2553 * * * * * * * * * * * * 1725 8 0 * * * * * * 1680 0 0 S 9 3022 * * * * * * * * * * 3189 2553 * * 745 * * * * 9 0 * * * * * * 1680 0 0 D 10 * * 1177 1520 * * * * * * * * * * * 2258 * * * * 10 0 * * * * * * 1680 0 0 G 11 * * * * * 0 * * * * * * * * * * * * * * 11 0 * * * * * * 1680 0 0 G 12 * * * * * 0 * * * * * * * * * * * * * * 12 0 * * * * * * 1680 0 0 N 13 3022 * * * * * * * * * * 1307 2258 * * * 1922 * * * 13 0 * * * * * * 1680 0 0 V 14 * * * * * * * 2553 * * * * * * * * * 270 * * 14 0 * * * * * * 1680 0 0 G 15 * * * * * 0 * * * * * * * * * * * * * * 15 0 * * * * * * 1680 0 0 C 16 * 0 * * * * * * * * * * * * * * * * * * 16 0 * * * * * * 1680 0 0 V 17 * * * * * * * 3419 * 2553 * * * * * * * 442 * * 17 0 * * * * * * 1680 0 0 D 18 * * 0 * * * * * * * * * * * * * * * * * 18 0 * * * * * * 1680 0 0 I 19 * * * * * * * 1405 * * * * * * * * * 684 * * 19 0 * * * * * * 1680 0 0 I 20 * * * * * * * 1425 * 2553 * * * * * * * 1129 * * 20 0 * * * * * * 1680 0 0 V 21 * * * * * * * 900 * * * * * * * * * 1107 * * 21 0 * * * * * * 1680 0 0 Q 22 * * * * * * * * * 993 * * * 1007 * * * * * * 22 0 * * * * * * 1680 0 0 R 23 * * * * * * * * * * * * * * 0 * * * * * 23 0 * * * * * * 1680 0 0 V 24 2656 * * * * * * * * * * * * * * 2258 1109 2568 * * 24 0 * * * * * * 1680 0 0 Y 25 * * * * * * * * * * * * * * * * * * * 0 25 0 * * * * * * 1680 0 0 P 26 * * * * * * * * * * * * 0 * * * * * * * 26 0 * * * * * * 1680 0 0 L 27 * * * * * * * 1223 * 2273 2553 * * * * * 2362 * * * 27 0 * * * * * * 1680 0 0 Q 28 * * * 3022 * * * * * 2258 * * * 582 * * * * * * 28 0 * * * * * * 1680 0 0 W 29 * * * * 1769 * * * * * * * * * * * * * 501 * 29 2889 209 * 6568 15 * * 1680 1835 0 T 30 * * * * * * * * * * * * * * * * 0 * * * 30 0 * * * * * * 1850 0 0 V 31 * * * * * * * * * * * * * * * * * 0 * * 31 0 * * * * * * 2646 0 0 W 32 * * * * 2243 * * * * 2723 * * * * * * * * 650 * 32 0 * * * * * * 2646 0 0 K 33 * * * * * * * * 432 * * * * * 1950 * * * * * 33 0 * * * * * * 3122 0 0 L 34 * 2597 * * * * * 3322 * 1212 2996 * * * * * * 2493 * * 34 0 * * * * * * 3122 0 0 R 35 2597 * * * 3910 * * * * * * * * * 568 3419 * * * * 35 0 * * * * * * 3122 0 0 V 36 * * * * * * * 1418 * 3377 * * * * 2597 * * 1457 * * 36 0 * * * * * * 3122 0 0 T 37 1640 * * * * * * 1953 * * 3377 * * * * * 2848 2430 * * 37 152 * 3322 * * * * 3122 0 0 S 38 * * 834 2577 * * * * * * * 3975 * * * 2266 * * * * 38 0 * * * * * 0 2967 0 1000 Y 39 2386 * 2577 * 3277 * * * * * * * * * 3059 * * * * 1259 39 0 * * * * * 0 2967 0 1000 K 40 3059 * * * * 4413 * * 3002 * 3277 * * * 844 4381 * * * * 40 0 * * * * 0 * 2967 0 1000 K 41 * * * 1631 * * * * 908 * * 4116 * 3531 * * * * * * 41 0 * * * * * * 3308 0 0 K 42 * * * 3558 * 3454 4171 * 1958 * * * 2070 4024 * 2703 * * * 4116 42 0 * * * * * * 3308 0 0 E 43 * * * 775 * * * * * * * 2703 3568 3454 * * * 3531 * * 43 0 * * * * * * 3308 0 0 K 44 * * * * * 3783 2819 * 1079 * * * * 3331 3717 * 2869 * * * 44 415 3209 2819 643 1476 * * 3400 1270 0 S 45 3706 * 1897 * * 4032 * * * * * * * * * 1592 2461 3638 * * 45 145 3388 * 626 1506 0 * 3122 1309 1000 A 46 2388 3856 * * 4039 * * * * 3171 * * * * * 2842 3666 2543 * 2488 46 0 * * * * * * 3652 0 0 L 47 * * * * 2884 * 2977 2271 * 1916 * * * * * * 5045 2470 * 4195 47 176 3123 * 0 * * * 3758 1502 0 L 48 * * * * * * * * * 284 2485 * * * * * * * * * 48 0 * * * * * * 3668 0 0 S 49 * * * 3021 * * * * * * * 3561 * * * 716 2447 * * * 49 0 * * * * * * 3668 0 0 I 50 * * * * * * * 610 * 3269 * * * 3021 * * * 3083 * * 50 0 * * * * * * 3668 0 0 W 51 * * * 3021 * * * * * * * * * * * * * * 190 * 51 0 * * * * * * 3668 0 0 R 52 * * * * * 4174 * * 4017 * * 3023 * * 504 4198 * * * * 52 0 * * * * * * 3668 0 0 P 53 3021 * * * * * * * * * * * 190 * * * * * * * 53 0 * * * * * * 3668 0 0 S 54 * * * * * * * * * 3086 * 3857 1955 * 3021 1665 3098 * * * 54 0 * * * * * * 3668 0 0 S 55 * * 2023 1180 * * * * * 4562 * * 3725 * * 2361 * * * * 55 0 * * * * * * 3668 0 0 D 56 * * 767 1277 * * * * * * * * * * * * * * * * 56 0 * * * * * * 3668 0 0 L 57 * * * * * * * 3016 * 834 * * * * * * 3857 2021 * * 57 0 * * * * * * 3668 0 0 S 58 * 3340 * * * 4174 * * * 1827 5120 * * 3670 3098 3306 4210 3888 * 3092 58 0 * * * * * * 3668 0 0 S 59 3852 * 3173 2546 * 4232 * * * * * * * 3437 * 1448 2872 * * * 59 0 * * * * * * 3668 0 0 L 60 * * * 3888 * * * 3204 * 1025 2698 * * * 3021 * * 4174 * * 60 0 * * * * * * 3668 0 0 L 61 * * * * 2995 * * * * 523 * * * * * * * 2485 * * 61 80 4210 * 1585 585 * * 3668 1000 0 T 62 3857 * * * * * * 4909 1995 * * 4017 * 1795 * * 2593 2931 * * 62 0 * * * * * * 3668 0 0 E 63 * * * 190 * * * * * * * * * * 3021 * * * * * 63 190 3021 * 2585 263 * * 3668 1000 0 G 64 4148 * * * * 260 * * * * * * * 4232 4174 * * * * * 64 0 * * * * * * 3668 0 0 K 65 4232 3048 * * * * * * 1693 * * 2744 * 2496 3071 3814 * * * * 65 0 * * * * * * 3668 0 0 R 66 3976 4210 * * * 3857 * * * 4017 * * * * 1290 * 3021 3161 * 3215 66 0 * * * * * * 3668 0 0 Y 67 * 4210 3021 * 3888 * * * * 2305 3857 * * * * * * 2546 * 1678 67 0 * * * * * * 3668 0 0 R 68 * * * 2599 * * * * 2740 * * * * * 1639 1689 4210 * * * 68 0 * * * * * * 3668 0 0 I 69 * * * * 4232 * * 1300 * 2022 4561 * * * * * * 1988 * * 69 0 * * * * * * 3668 0 0 Y 70 * 4562 * * * 4232 4210 * * * * * 3021 * 4148 3035 * 3007 * 1237 70 0 * * * * * * 3668 0 0 H 71 * * * * * * 1722 * 3021 * * 1289 * 4562 * 3888 4198 * * * 71 0 * * * * * * 3668 0 0 L 72 4148 * * * * * * 4210 * 782 * * * * * * * 1700 * * 72 0 * * * * * * 3668 0 0 A 73 1947 * * * * * 3976 * * * 4198 * * * * 2364 1223 * * * 73 0 * * * * * * 3668 0 0 V 74 1725 * * * * * * * 3021 * * * 4198 * * 5120 1615 2602 * * 74 0 * * * * * * 3668 0 0 S 75 * * * * * * * * * 4789 * 2190 * * 3021 788 4560 * * * 75 103 3857 * 1000 1000 * * 3668 1000 0 K 76 3035 * 3670 * * 2190 * * 4100 * 3021 * 2418 2562 * * 4561 * * * 76 80 * 4210 * * * * 3668 0 0 S 77 * * * * * 3837 * 4261 3088 * * 3956 * * 2926 1250 3723 3878 * * 77 0 * * * * * 0 3630 0 1000 K 78 * * * * * * * * 1169 * * * * * 849 * * * * * 78 0 * * * * * 0 3630 0 1000 S 79 * * * * 2805 2672 * * 3542 * * 1647 * * * 1762 * * * * 79 311 3822 3023 1585 585 * 0 3536 1000 1000 K 80 * 2754 3679 * * * * * 1632 * 3703 2751 * 2536 4227 * * * * * 80 232 * 2751 * * 1403 685 3419 0 1669 F 81 * * * * 2977 3292 * * * * * 3526 3561 * * 983 * 3417 * * 81 0 * * * * * 0 3298 0 1999 E 82 * * 3310 3194 * 1637 * * * 4176 3543 * * 3417 * * 2097 * * * 82 140 * 3434 * * * 0 3298 0 1999 R 83 4083 * * * * * * * 4450 * 3386 1678 * * 1611 2647 * * * * 83 0 * * * * 1517 620 3171 0 2198 P 84 2053 2504 2908 * * 2162 * * * * * * 4639 * * 3608 3266 * * * 84 0 * * * * 648 1467 3357 0 1934 S 85 3740 * 3322 2010 * * 3946 * * * * 3138 3770 * * 3215 3533 2931 * * 85 0 * * * * 0 * 3514 0 1000 I 86 3975 * * * * * * 2015 * 2689 2980 * * * * * 4880 1422 * * 86 0 * * * * * * 3606 0 0 Q 87 * * * 3872 * * * * 2980 * * * * 377 4842 * * * * * 87 0 * * * * * * 3606 0 0 L 88 * * * * * * * 3822 * 106 * * * * * * * * * * 88 0 * * * * * * 3606 0 0 T 89 3404 * * * * * * * 4152 * * 3822 * * * 2260 811 * * * 89 0 * * * * * * 3606 0 0 A 90 803 * * * * 2549 * * * * * * * * * 3891 2408 * * * 90 0 * * * * * * 3606 0 0 T 91 * * * * * 2055 4257 * * * * 3158 * * * 2847 1133 * * * 91 0 * * * * * * 3606 0 0 K 92 * * * * * * * * 431 * * * * * 1953 * * * * * 92 0 * * * * * * 3606 0 0 R 93 3062 * * 2980 * 3872 * 3975 1777 * * 2559 * * 4910 2977 * * * * 93 0 * * * * * * 3606 0 0 T 94 * * * * * * * * * * * * * * * 3923 98 * * * 94 0 * * * * * * 3238 0 0 Q 95 * * * * * * * * 3626 * * 3733 * 1817 1246 3802 3907 * * * 95 0 * * * * * * 3207 0 0 Y 96 * * * * 1147 * * * * * * * * * * * * * * 867 96 0 * * * * * * 3207 0 0 Q 97 * * * 1860 * * * 3516 3674 4047 * * * 1561 2650 * * * * * 97 0 * * * * * * 3139 0 0 Q 98 * * 4036 3391 * * 4234 * * * * * 2466 1577 3488 3324 * 3551 * * 98 0 * * * * * * 3073 0 0 L 99 * * * * * * * 2332 * 490 * * * * * * * 3488 * * 99 0 * * * * * * 3073 0 0 P 100 * * * * * * * * * * * * 1077 1881 * 3265 2733 * * * 100 235 2733 * 1585 585 * * 2468 1000 0 V 101 1468 * * * * 3514 * * * * * * 3433 * * * * 1126 * * 101 0 * * * * * * 2468 0 0 S 102 1734 * * * * * * * * * * * * * * 516 * * * * 102 0 * * * * * * 2468 0 0 S 103 * * 2499 1881 * * 3833 2733 * * * * * 3265 * 2139 * * * * 103 0 * * * * * * 2468 0 0 E 104 * * * 615 * * * * 3265 2735 * * * * * 3433 * * * * 104 0 * * * * * * 2468 0 0 T 105 3833 * * * * * * 2232 2735 2757 3265 * * * 2733 * 3702 * 3514 * 105 0 * * * * * * 2468 0 0 L 106 * * * * * * * * * 0 * * * * * * * * * * 106 0 * * * * * * 2468 0 0 L 107 * * * 3433 3138 * * * * 3702 * * * 1976 * 1679 * * * 2733 107 235 2733 * 1585 585 * * 2468 1000 0 Q 108 * * * * * * * * 3514 * * * * 576 2735 * 3454 * * * 108 0 * * * * * * 2468 0 0 V 109 * * * * * * 3514 1980 * * * * * * * 2735 * 1260 * 3454 109 0 * * * * * * 2468 0 0 Y 110 * * * * 1822 * * * * * * * * * * * * * * 480 110 0 * * * * * * 2468 0 0 Q 111 * * * * 3265 * * 2735 * * * * * 615 * 3433 * * * * 111 0 * * * * * * 2468 0 0 P 112 * * * * * * * * * * * * 0 * * * * * * * 112 0 * * 0 * * * 2272 0 0 //