HHsearch 1.5 NAME d1mh3a1 FAM FILE d1mh3a1 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1mh3a1.a3m DATE Mon Mar 8 15:39:39 2010 LENG 55 match states, 55 columns in multiple alignment FILT 111 out of 1833 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.5 EVD 0.4425 1.4771 SEQ >ss_dssp CCSCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC >sa_dssp EEEDEBCDEBDEDADCCBDDDEDBDECCCCEBBEECEBDDECADDCBDEDDEEEE >ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC >ss_conf 9632089999999999999878998899999999858997571167331220069 >Consensus axrtxftxxQxxxLexxFxxxxxPxxxxxxxLAxxxglxxxqVxxWFqNrRxrxK >d1mh3a1 AAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK >UniRef50_UPI0000E20214(107-160:590) PREDICTED: similar to NK1 transcription factor related 2-like,b n=1 Tax=Pan troglodytes RepID=UPI0000E20214 E=0.0002 s/c=0.86 id=27% cov=100% -ARTAFTYEQLVALENKFRATRYLSVCERLNLALSFSLTETQVKIWFQTPEHRAR >UniRef50_UPI0000EB42CA(97-144:154) UPI0000EB42CA related cluster n=1 Tax=Canis lupus familiaris RepID=UPI0000EB42CA E=0.0007 s/c=0.94 id=27% cov=75% -----ITRSQSHTLVQAFERNHFPDITTRKKLAKKMGIQEPRIQV---------- >UniRef50_Q869W0(489-541:942) Homeobox protein 2 n=1 Tax=Dictyostelium discoideum RepID=HBX2_DICDI E=1e-07 s/c=1.09 id=25% cov=93% -----LKKEQADILKTFFDNDDYPTKDDKETLANRLGMSYCAVTTWFSNKRQEKK >UniRef50_Q870I4(115-167:210) Mating-type-like protein ALPHA2, silenced copy at MTL3 n=3 Tax=Candida glabrata RepID=MTL32_CANGA E=1e-06 s/c=1.02 id=22% cov=93% -----FTRENVQILETWYRNhidNPYLDHNSQQYLAQKTNLSKIQIKNWVANRRRKQK >UniRef50_C5HU31(103-157:164) A1 n=1 Tax=Clavispora lusitaniae RepID=C5HU31_CLALS E=4e-05 s/c=0.90 id=27% cov=102% AVRKSFTSEAKTKLELFYLANTNPRKAEIVKMARECNMPEEKVRAWFANKRYRER >UniRef50_O17102(231-282:733) Putative uncharacterized protein n=1 Tax=Caenorhabditis elegans RepID=O17102_CAEEL E=0.0002 s/c=0.91 id=26% cov=96% ---SSFSYDAIHFLEQEYRKTKYISSTDCQKISEKIHLDEELIEKWFRARRATSK >UniRef50_UPI000176121F(255-308:377) PREDICTED: similar to cut-like 2, partial n=1 Tax=Danio rerio RepID=UPI000176121F E=0.001 s/c=0.83 id=22% cov=89% -----LSVQEKQTLFSAYELEPYPSQNTIDRLAAQLGLQTSTVSNWFYNYRSR-- >UniRef50_Q6C1F2(277-331:850) YALI0F16852p n=1 Tax=Yarrowia lipolytica RepID=Q6C1F2_YARLI E=4e-09 s/c=1.14 id=23% cov=102% APRKKLSEHQLRVLEKVFNETPKPCLKTRTELERDLDLPKKNIQIWFQNRRAKEK >UniRef50_B4NHL7(1894-1951:3147) GK13603 n=1 Tax=Drosophila willistoni RepID=B4NHL7_DROWI E=2e-05 s/c=0.86 id=25% cov=100% -ARTRITDDQLKILRAHFDINNSPSEESIMEMSQKANLPMKVVKHWFRNTlfkeRQRNK # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * A 1 425 * * * * 3001 * * * * * * * * * 2943 * * * * 1 0 * * * * * * 4174 0 0 A 2 1053 * * * * * * 4605 2378 * * * 4588 4480 4435 3273 * 4361 * * 2 0 * * * * * * 4762 0 0 A 3 2261 * * 4115 * * * * 3208 * * * 4593 * 776 * * * * * 3 0 * * * * * * 4924 0 0 A 4 4162 * * 5160 * * * * 3651 5731 * * * * 5625 2949 640 * * 5258 4 0 * * * * * * 5754 0 0 A 5 3495 5375 * 3748 5113 * * * 4046 * * * 3328 * 2617 2238 2854 3178 * * 5 0 * * * * * * 5632 0 0 I 6 * * * * 753 * * 2881 * 2158 * * * * * * * * * 4419 6 0 * * * * * * 6259 0 0 S 7 6418 * 4895 5670 * * * * 5112 6556 6241 4332 6475 * * 1613 1016 * * * 7 0 * * * * * * 6555 0 0 P 8 4036 * 3203 2670 * 6534 4527 * 2715 4871 7111 5858 2429 * 3959 3320 4513 * * 6130 8 0 * * * * * * 6555 0 0 Q 9 3640 * 2866 1985 6528 * 4175 * 3689 6738 6014 4370 * 3644 4582 3881 5203 4940 * 3973 9 0 * * * * * * 6563 0 0 A 10 4214 * 5498 4133 6790 * 6284 5243 6902 5144 * 5137 5830 624 6112 5538 4630 * * 6527 10 0 * * * * * * 6575 0 0 R 11 5891 * * 4936 * * 5437 4055 2742 1677 5873 6634 * 6602 2964 4029 3930 3294 * 6553 11 0 * * * * * * 6575 0 0 A 12 3074 6087 3586 2732 7096 5676 4586 7051 4010 4635 6803 3814 5669 2668 3295 4535 5252 5765 * 7046 12 0 * * * * * * 6586 0 0 F 13 2906 * 5905 3587 4047 * 6785 2177 4959 4151 5692 * * 5185 5017 5381 3987 2393 * 4955 13 0 * * * * * * 6796 0 0 L 14 * * * * 5848 * * * * 155 3851 * 6047 * * * * * * * 14 0 * * * * * * 6797 0 0 E 15 * * 4227 1021 * 5077 6214 7015 4249 4556 5402 3505 * 3577 4084 6451 6966 5273 * 6942 15 0 * * * * * * 6797 0 0 Q 16 2678 * 5844 2905 6436 5116 5172 5848 3063 4812 * 4857 6496 3168 3557 2781 4523 5550 * * 16 0 * * * * * * 6797 0 0 V 17 2962 4303 * 3486 4081 * 4575 4320 5191 3293 6929 5918 * 5049 4692 4476 4528 2657 4279 4076 17 0 * * * * * * 6797 0 0 F 18 * * * * 404 * * * * * * * * * * * * * 5550 2165 18 14 6709 * 1585 585 * * 6797 1000 0 R 19 3091 * 4135 2687 * 5125 4791 7150 3197 4350 7025 4067 * 2850 3331 3462 4930 6436 * * 19 42 5768 6579 1272 771 * * 6797 1630 0 R 20 3931 6679 6967 3171 4822 * * 3264 3099 3835 * 4400 * 3097 2755 4339 4785 4155 5953 6769 20 85 4126 * 1528 614 0 * 6786 2714 1000 K 21 5550 3793 3743 4787 5480 5446 4261 * 4831 * * 1362 * 5027 6551 3851 2614 * * * 21 12 6966 * 1585 585 * * 6797 1000 0 Q 22 4445 * 4528 6447 * 5218 3618 6500 3105 5138 6579 4195 1770 3445 3619 4335 4202 * * * 22 28 5702 * 614 1528 * * 6797 1698 0 S 23 5303 5466 * * 3466 * 3334 * 3802 * 6497 4093 * 5078 4274 3911 4076 5814 * 1336 23 0 * * * * * * 6797 0 0 L 24 5470 6204 * * * * * 3694 6011 3066 6148 * 495 * * * * 5163 * * 24 0 * * * * * * 6797 0 0 N 25 4930 6613 2248 4712 * 5013 * 6011 4707 * * 3037 6204 * 5208 1751 2607 * * * 25 0 * * * * * * 6797 0 0 S 26 2949 * 4519 4080 4666 5343 5388 5025 2563 5701 6971 5680 3748 6981 2945 3380 4348 3719 * * 26 0 * * * * * * 6797 0 0 K 27 2999 * 3327 2039 4724 5908 6437 6623 3598 5120 * 5113 6026 5179 3753 4102 3792 6441 * 4146 27 25 * 5891 * * * * 6797 0 0 E 28 5392 * 3505 1674 * 6142 5307 5515 4143 5029 4891 * * 2885 3687 5575 2846 5696 * * 28 0 * * * * * 0 6757 0 1000 K 29 6142 5310 * 7220 6487 5445 6314 2931 2488 3419 * 6449 * 4359 1457 6812 4857 5217 * 6713 29 0 * * * * 0 * 6757 0 1000 E 30 3927 * 3847 2244 6790 7055 6451 4750 2977 4310 5266 5254 * 2887 3493 3777 5111 5478 * 6551 30 11 7049 * 2000 415 * * 6797 1000 0 E 31 3302 * 5081 1816 * 6525 5908 5218 3078 5044 6970 6774 * 3146 3273 4783 4247 6497 6774 4670 31 0 * * * * * * 6797 0 0 V 32 * * * * * * * 2168 * 591 4069 * * * * * * 4749 5891 * 32 0 * * * * * * 6797 0 0 A 33 627 5776 6579 6613 * 4217 * * * * * 6639 * 6709 6025 2682 4251 5918 * * 33 0 * * * * * * 6797 0 0 K 34 3925 * 4045 2593 * 6794 6005 6639 2649 5315 4576 3886 * 3375 3158 3866 4615 4286 * 6623 34 0 * * * * * * 6797 0 0 K 35 3759 * 4894 2802 6497 6796 4974 4867 2055 3894 5796 6850 * 3244 3246 5378 4543 5880 5550 6368 35 0 * * * * * * 6797 0 0 C 36 5201 4191 * * 4600 5009 * 2788 5961 1650 5792 * * * * 4815 2173 3767 * 5848 36 19 6268 * 0 * * * 6797 1000 0 G 37 * 6980 3705 4626 * 1175 5990 * 4330 6845 5960 2334 * 4126 * 3851 6916 6850 * * 37 24 5942 * 0 * * * 6797 1625 0 I 38 * 6493 * * 6515 * * 2809 * 922 2866 * * * 6439 5826 6496 2943 * * 38 0 * * * * * * 6801 0 0 T 39 4924 * 4481 4218 * 4450 5197 * 4022 * * 5423 2814 5159 5572 1848 2049 * * * 39 0 * * * * * * 6801 0 0 P 40 4586 * 4769 1798 6436 5842 * 4387 3278 4217 6772 6717 2682 5374 4870 4358 4700 4523 * 4760 40 0 * * * * * * 6801 0 0 L 41 5296 5092 5151 2824 * 5747 4652 6237 2378 5964 * 5243 5430 4750 2062 3831 3797 5189 * * 41 0 * * * * * * 6801 0 0 Q 42 5207 6498 * 4368 * * 5550 6891 5233 6762 * 4522 * 1306 2910 4254 4152 2766 6493 * 42 0 * * * * * * 6801 0 0 V 43 * * * 6263 * * * 1210 * 3962 * * * * * * * 1028 * * 43 0 * * * * * * 6801 0 0 R 44 4657 6498 4985 3506 * 6897 6745 * 2091 * * 5309 * 2014 3179 4047 4007 5661 5560 5040 44 0 * * * * * * 6801 0 0 V 45 4953 5930 7010 6750 5701 * 5541 2414 4802 * 5182 2490 * 6821 5097 5081 2941 2024 * 5593 45 0 * * * * * * 6801 0 0 W 46 * * * * 5461 * * * * * * * * 5678 5703 * * * 156 4616 46 0 * * * * * * 6316 0 0 F 47 * * * * 155 * * 6873 * 4946 * * * * * * * 6286 5676 5122 47 0 * * * * * * 6305 0 0 I 48 3485 4408 6527 5897 * * 5052 5894 3418 6411 4346 5817 * 1264 3797 4493 4079 * * 5325 48 0 * * * * * * 6354 0 0 N 49 5423 * 5583 5759 * * 4740 * 4678 * * 276 * * 6136 5605 * * * * 49 0 * * * * * * 6351 0 0 K 50 4852 5140 * 5586 * * 3897 * 2357 6148 * 6273 5599 3771 1206 6677 4133 * 6370 5604 50 23 5986 * 2000 415 * * 6341 1197 0 R 51 * * * * * * * * 4918 * * * * * 49 * * * * * 51 46 5002 * 1391 692 * * 6342 1649 0 M 52 1367 * * * 6477 * * 4773 * 4256 4906 4302 * 2950 3642 4416 3343 4859 * 4686 52 0 * * * * * * 6224 0 0 R 53 5487 * * 4906 * * 5926 * 1343 6475 * * * 4791 1091 * 5889 * * * 53 0 * * * * * * 6182 0 0 S 54 3731 5886 2802 2570 6364 5963 5636 * 5048 4707 6428 4253 * 3630 * 2174 * 4032 4277 * 54 0 * * * * * * 5975 0 0 K 55 * * * * * * * * 378 * * * * * 2116 * * * * * 55 0 * * 0 * * * 5881 0 0 //