HHsearch 1.5 NAME d1ldda_ FAM FILE d1ldda_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1ldda_.a3m DATE Wed Mar 10 05:10:38 2010 LENG 74 match states, 74 columns in multiple alignment FILT 53 out of 57 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.2 EVD 0.4205 0.7899 SEQ >ss_dssp CCHHHHHHHHHHHHHHHHHHCSEEHHHHHHHHHHHSCGGGCCTTCCHHHHHHHHHHHHHTTSEECCTTTEEEEC >sa_dssp EEEEBBEDACDDACDBAEEEDDBDCDEABDDADECBCEEDCAEEBDDECADDCADDBCEDEDBEDCEECCBDCE >ss_pred CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCEEEEC >ss_conf 94678999999999998287789799999999998358998667898999999999974297899339867859 >Consensus xxexxlxxyWxyIxgMLtNxgslplxRIhxmLkmfvxxxxxxxxxtxxeLxxfLxxlVxexkLxxvxgGxYkLv >d1ldda_ KYELTLQRSLPFIEGMLTNLGAMKLHKIHSFLKITVPKDWGYNRITLQQLEGYLNTLADEGRLKYIANGSYEIV >UniRef50_A3LQ64(761-828:830) Predicted protein n=1 Tax=Pichia stipitis RepID=A3LQ64_PICST E=2e-15 s/c=1.22 id=37% cov=92% -----LEVLWPYLKSMLENISYLKFERVKTLLKLTVPKDkFDFGTIDDSKLEDYLDWLVDEEKLE-ITQQSYKL- >UniRef50_B3S490(401-470:471) Putative uncharacterized protein (Fragment) n=1 Tax=Trichoplax adhaerens RepID=B3S490_TRIAD E=3e-17 s/c=1.28 id=32% cov=96% QHEEEQELYWSYIVGMLTNFPAMELDRICSSLKLFIPSA---GELSSRDLKMFLDKKVQEQKLTH-NNGEYALV >UniRef50_Q5C7X6(126-198:202) SJCHGC08458 protein (Fragment) n=1 Tax=Schistosoma japonicum RepID=Q5C7X6_SCHJA E=3e-21 s/c=1.40 id=28% cov=100% RKEKELQVFWSYITAMLTNLGSLSLDRIHSMLRMFALGSTSGLEFSKDELRRFLDRKIREGQLGC-DGDVYKLI >UniRef50_C1FJA1(809-873:874) Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1FJA1_9CHLO E=5e-18 s/c=1.41 id=29% cov=89% -----MKVYEQYVIGMLTNFPSLPPDRIHNMLKMFVQD--PPYDRSLDQLEAFLGQLVAEDKLALEGNQYSK-- >UniRef50_B2W8F0(874-942:943) Anaphase-promoting complex subunit Apc2 n=1 Tax=Pyrenophora tritici-repentis Pt-1C-BFP RepID=B2W8F0_PYRTR E=1e-11 s/c=1.02 id=30% cov=82% -----------FIIGMLTNQGNMNTGRIAMMMRLMVQGGFPGGEA---EVRGLLAELEDGGRVVKVGGDIWGVV >UniRef50_P34514(656-724:731) Anaphase-promoting complex subunit 2 n=3 Tax=Caenorhabditis RepID=APC2_CAEEL E=1e-10 s/c=0.98 id=24% cov=91% -----LEQYWGYTRNFIANHapnGEVKAERMHRVYRMF--GSPTSAGPTLDHVSAFLQRKVALGLLTCI-NGSYRII >UniRef50_D1Z7Q7(1041-1112:1114) Whole genome shotgun sequence assembly, scaffold_7 n=1 Tax=Sordaria macrospora RepID=D1Z7Q7_SORMA E=6e-19 s/c=1.32 id=27% cov=86% --------YWQYIKGMLTNASaSMPLAQMAMMMKMLIADGFPWTN---EQLGEFLAEKIAEGEMEVVSGGKYRLV >UniRef50_A8I146(446-505:744) Cullin-related protein n=1 Tax=Chlamydomonas reinhardtii RepID=A8I146_CHLRE E=1e-11 s/c=1.18 id=28% cov=81% ------------LVGMVTqNYGGLPLERLNHMLRLFVVSTPRYDK-TPEQLQAFLQVLIAREVVVLESNGVYK-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * K 1 * * * * * * * * 1099 * * * * 2220 1651 * * * * * 1 0 * * * * * * 2340 0 0 Y 2 * * * * * * 2220 * 1651 * * * * 2076 * * * * * 2122 2 0 * * * * * * 2340 0 0 E 3 * * * 0 * * * * * * * * * * * * * * * * 3 0 * * * * * * 2653 0 0 L 4 * * * 852 * * * * 2817 2783 * 2654 * * * * * * * * 4 0 * * * * * * 2653 0 0 T 5 * * * 869 * * 3093 * * * * * * * * 2630 2524 * * * 5 0 * * * * * * 2960 0 0 L 6 * * * * * * * 4737 * 1128 1308 * * 4563 * * * 4088 * * 6 0 * * * * * * 3831 0 0 Q 7 * * 3942 1588 * * 5154 * 3006 * * 4046 * 1707 3591 * * * * * 7 0 * * * * * * 3863 0 0 R 8 * * * * * * * 3863 3979 3260 5099 * * 2475 3394 * 5228 1209 * * 8 0 * * * * * * 3863 0 0 S 9 4376 * * * 1949 * * * * 4258 * * * * * 4902 5014 4361 * 923 9 0 * * * * * * 3973 0 0 L 10 * * * 3939 * * * * * 2685 * * * * * * * * 360 * 10 0 * * * * * * 3996 0 0 P 11 * * * * 4927 4294 * 4408 4133 * * * 2095 2093 4776 1937 5267 5641 * * 11 0 * * * * * * 3996 0 0 F 12 * * * * 1443 * * * * * * * * * * * * * * 662 12 0 * * * * * * 4330 0 0 I 13 * * * * * * * 505 * 3850 * * * * * * 3738 2725 * * 13 0 * * * * * * 4378 0 0 E 14 * * * 3786 6160 * 5503 3028 2526 5020 5157 * * 3279 4624 * 4370 1537 * * 14 0 * * * * * * 4378 0 0 G 15 3503 * 4938 * * 534 * * * * * 4031 * * * 3487 4710 * * * 15 0 * * * * * * 4378 0 0 M 16 * * * * 3738 * * 3819 * * 227 * * * * * * * * * 16 0 * * * * * * 4378 0 0 L 17 * * * * * * * 3387 * 199 * * * * * * * 4914 * * 17 0 * * * * * * 4378 0 0 T 18 3738 * * 4138 * * * 4403 5280 4938 5964 * * 4710 6368 4154 644 * * * 18 49 4914 * 0 * * * 4378 1000 0 N 19 * * * * * * * * * * * 38 * * * 5278 * * * * 19 0 * * * * * * 4378 0 0 L 20 4714 * * * 2350 * 4624 4254 * 1295 * * * 2896 5503 3723 * * * 4914 20 101 3891 * 1142 871 * * 4378 1749 0 G 21 4680 * 3291 3885 * 954 * * 5539 * * * 3436 5280 * 3366 4710 * * * 21 62 4566 * 0 * * * 4378 1324 0 A 22 2868 * * 4624 * 4914 * * * * * 4596 3636 4085 * 1170 2965 * * 4789 22 48 4937 * 0 * * * 4378 1317 0 M 23 * * * * * * * 4710 * 927 1637 * * * * 5749 5582 3738 * * 23 0 * * * * * * 4378 0 0 K 24 4061 * * 4325 * 5747 * * 2328 * * 3948 989 * * 3266 * * * * 24 0 * * * * * * 4378 0 0 L 25 3194 * * * 3749 * * 3204 * 713 * * 5992 * * * 5234 4167 * * 25 0 * * * * * * 4378 0 0 H 26 3765 * 1804 1466 * 4624 5586 5503 4523 * * 5194 4903 3849 * 5582 * * * * 26 0 * * * * * * 4378 0 0 K 27 * * * 5278 * * * * 3203 * * * * 2789 522 * 5342 * * * 27 0 * * * * * * 4378 0 0 I 28 * * * * * * * 540 * 3319 2509 * * * * * * 4789 * * 28 0 * * * * * * 4378 0 0 H 29 3302 5313 * * * * 695 4733 3749 5116 * 4914 * 5172 * 6279 * 5576 * 5636 29 0 * * * * * * 4378 0 0 S 30 4938 * * * * * 4914 * 5280 * 2310 2372 * 3665 4624 2243 2550 6368 * * 30 0 * * * * * * 4378 0 0 F 31 * * * * 3347 * * 4055 * 3224 698 5342 * * * 5313 5162 4624 * * 31 0 * * * * * * 4378 0 0 L 32 * * * * 4861 * * * * 321 3006 * * * * * * * * 4624 32 0 * * * * * * 4378 0 0 K 33 5599 * * * * 5948 * * 717 * * 4710 * 4938 2294 4878 4434 * * * 33 26 5810 * 0 * * * 4378 1000 0 I 34 * * * * 4456 * * 3655 * 2545 837 * * * * 4349 4424 4369 * * 34 0 * * * * * * 4378 0 0 T 35 3033 * * * 827 * * * * 3113 3435 * * * * * 3417 6332 * * 35 136 * 3477 * * * * 4378 0 0 V 36 1854 4881 * * * * * 3067 * * 4081 * * * * * 4129 1140 * * 36 21 * 6141 * * * 0 4244 0 2101 P 37 4048 * * * 5884 5663 * 4855 * 4040 5943 * 1409 3560 5313 3321 3495 3106 * * 37 0 * * * * 861 1154 4245 0 2267 K 38 4948 * 3354 4527 * 1890 5078 * 2368 * * 5215 4051 3457 5981 3083 5574 * * * 38 107 * 3804 * * 923 1081 4313 0 1495 D 39 5112 * 2009 3259 * 1376 * * * * * 5436 4695 * * 2869 4863 * * * 39 218 3656 4033 0 * 2260 338 4338 1461 1968 W 40 4077 6056 4449 5716 1951 * 5597 5674 * 3500 * 4906 2554 4340 * 4111 2857 * 5332 * 40 0 * * * * 444 1918 4289 0 2190 G 41 4889 * 4761 5475 * 3562 3532 * * * * 3340 1420 5479 4038 3344 4154 5301 * * 41 0 * * * * * 0 4350 0 1443 Y 42 6124 * * * 2532 2888 * 5888 * 4510 5111 5888 3836 * 5301 3676 5879 4585 3555 1979 42 195 * 2983 * * 0 * 4350 0 1443 N 43 3029 * 3145 * 5395 2878 * 5730 * 4701 * 4157 * * * 2160 4461 4434 * 2507 43 73 * 4339 * * 422 1981 4300 0 2442 R 44 5960 * 2877 2686 * 3742 4837 * 3651 * 5511 2261 * 5173 4141 5057 2662 * * * 44 490 * 1796 * * 0 * 4317 0 2072 I 45 2847 3399 * * 3758 * * 2630 2962 4844 * * 3424 * 3178 4405 * 3099 * * 45 78 * 4246 * * 1238 796 4242 0 2703 T 46 * * 3846 5013 * * * 6028 * * * 2952 * * * 1991 990 * * * 46 0 * * * * * 0 4212 0 2141 L 47 * * 4071 3697 * * * 3207 5747 1492 * * 2541 2850 5529 5029 * 5774 * * 47 22 * 6028 * * 242 2693 4212 0 2141 Q 48 5232 * 2788 1668 * * 5500 * 3899 * * * 5182 2568 5197 2896 3901 * * * 48 0 * * * * 0 * 4306 0 1631 Q 49 * * 4050 1205 * 5385 4667 * 4839 4686 * * * 1439 * * * * * * 49 0 * * * * * * 4356 0 0 L 50 * * * * * * * * * 208 * * * * * * * 2900 * * 50 0 * * * * * * 4356 0 0 E 51 4880 * * 2379 * 4189 * * 2438 5739 * * * 2299 2549 3214 * 4885 * * 51 0 * * * * * * 4356 0 0 G 52 2156 * 3632 2374 * 3524 6325 * * 3998 5237 6332 * 3941 4902 3528 5113 3522 * * 52 0 * * * * * * 4356 0 0 Y 53 * * * * 581 * * 4686 * 5032 * * * * * * * 4710 5739 2284 53 0 * * * * * * 4356 0 0 L 54 * * * * * * * * * 66 4475 * * * * * * * * * 54 0 * * * * * * 4356 0 0 N 55 2810 5972 2082 5113 * 3063 4658 * * 6203 * 3534 * 2113 * 3968 5483 * * * 55 0 * * * * * * 4356 0 0 T 56 3870 * * 2473 * 3650 * 5605 2993 5326 * 5386 * 3286 2810 3186 4194 4958 4839 * 56 0 * * * * * * 4356 0 0 L 57 5113 5630 * * * * * * 1348 1191 3058 * * * * * * * * * 57 0 * * * * * * 4356 0 0 A 58 5475 4107 * 4935 * * * 2827 * * 6162 * * * 5110 * * 508 * * 58 0 * * * * * * 4350 0 0 D 59 2227 * 3142 2607 * 5475 * * 2839 * * 4000 * 4232 2492 4231 * * * * 59 0 * * * * * * 4350 0 0 E 60 * * 3300 784 * 4433 * * 4874 3752 * 5936 * 3767 4953 6005 5302 * * * 60 0 * * * * * * 4350 0 0 G 61 * * 4133 1804 * 1386 3634 * * * * 3742 * 3996 * 4155 * * * * 61 42 * 5110 * * * * 4350 0 0 R 62 5946 * * 3650 * * * * 1147 2974 * * * 3285 3100 * * 3237 * * 62 0 * * * * 0 * 4312 0 1000 L 63 * * * * * * * 4063 * 260 4631 * * * * * * 3944 * * 63 23 * 5972 * * * * 4350 0 0 K 64 3699 * 5418 1256 * 5966 * 3695 5422 6173 * * * * * 3503 3551 2497 * * 64 110 * 3774 * * 0 * 4308 0 1000 Y 65 * 2138 * * 2409 * 5146 4791 4177 2791 4909 5024 * * * 4854 * 3280 * 3073 65 563 * 1630 * * 0 * 4243 0 1940 I 66 4334 * * 3682 * 4872 * 2686 * 4358 * * * * * 4316 4142 923 * * 66 494 * 1786 * * 0 * 4035 0 3131 A 67 4263 * 3746 * * 3215 * * 4921 * * 3203 3396 4428 4666 1700 2884 * * * 67 24 * 5943 * * 0 * 4079 0 2902 N 68 5533 * 3015 * * 1051 * * * * * 1576 * 4780 * * * * * * 68 0 * * * * 0 * 4310 0 1000 G 69 5420 * 2597 * * 413 * * * * * * * 4052 * * * * * * 69 0 * * * * * * 4303 0 0 S 70 4435 * * 4306 * * * 4805 2496 3267 2986 3586 * 5194 4373 2661 5583 3358 * 5338 70 0 * * * * * * 4291 0 0 Y 71 * * * * 3843 * * * * * * * * * * 5338 * * 3925 252 71 0 * * * * * * 4291 0 0 E 72 5145 * * 5405 5893 4805 * * 754 5855 * * * 4223 2398 4571 * * * * 72 0 * * * * * * 4291 0 0 I 73 * * * * * * * 2643 * 398 * * * * * * * 3628 * * 73 0 * * * * * * 4247 0 0 V 74 * * * * * * * 2510 * 2946 * * * * * * * 526 * * 74 0 * * 0 * * * 3318 0 0 //