HHsearch 1.5 NAME d1lb2b_ FAM FILE d1lb2b_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1lb2b_.a3m DATE Mon Mar 8 17:23:19 2010 LENG 72 match states, 72 columns in multiple alignment FILT 101 out of 197 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.7 EVD 0.4199 0.7899 SEQ >ss_dssp CCTTTSBGGGGCCCHHHHHHHHHTTCCBHHHHHTCCHHHHHHSTTCCHHHHHHHHHHHHHTTCCSSCCCSCC >sa_dssp EDDBEDDBEECECDEDACDBBEEDEBEDBADAACDDDEDBDEBEEBDEEBBDCADECBDDEEBECDCEDEEE >ss_pred CCHHHCCHHHCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC >ss_conf 924356289829999999999995898689998289999984779998999999999998076017647899 >Consensus xxlLxxxIxxLxLSxRxxnxLxxxgIxtvxdLxxxxxxxLxxixgxGxkslxEIxxxLxxxglxlgmxxxxx >d1lb2b_ DPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLENW >UniRef50_D1C4N8(92-149:193) Putative uncharacterized protein n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C4N8_SPHTD E=3e-06 s/c=0.91 id=22% cov=75% ------PIEELDLSPRVLRLLHRYGLHTIAAVERVDEATLMLLPNFDARARHEVLRAIS------------- >UniRef50_B2Y1Z1(277-335:340) RNA polymerase alpha chain n=3 Tax=Spermatophyta RepID=B2Y1Z1_WELMI E=7e-06 s/c=0.88 id=20% cov=83% -------IDQLGLPSKISKSLRESHIYRVSDFMNYSQQDLKNLEYSKKESIEQTLEILHKY---FGINL--- >UniRef50_A8SD09(85-144:1010) Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SD09_9FIRM E=0.0005 s/c=0.76 id=19% cov=79% NSLSYHQITEIDMSARGFHYLTLMGCTTIAQLVRLKREDFQKTANIGEKTIEIIEE---------------- >UniRef50_D1C976(14-72:72) Helix-hairpin-helix motif protein n=7 Tax=Bacteria RepID=D1C976_SPHTD E=1e-07 s/c=0.98 id=27% cov=83% ------------LAQPARRALLGAGYTRLEDLTRVTEDQLLQLHGIGPKALAQLREALAARGLAFAADTDD- >UniRef50_P19587(410-476:478) DNA-directed RNA polymerase subunit alpha n=1 Tax=Scenedesmus obliquus RepID=RPOA_SCEOB E=2e-07 s/c=0.85 id=27% cov=88% ------PLTNLNLPYRITKILAKNNFFVVGDLLKISPNELKKLSGIGNYCVFILQKRFEKLGLKLGSR---- >UniRef50_A9F5X1(796-846:1477) Protein kinase n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9F5X1_SORC5 E=4e-07 s/c=1.09 id=25% cov=72% -----TPVEALPLGAREKNALDRSGIVTVRELLALPQNQLSAIRGVGRETARAIQD---------------- >UniRef50_Q06J39(299-354:358) DNA-directed RNA polymerase subunit alpha n=1 Tax=Bigelowiella natans RepID=RPOA_BIGNA E=2e-06 s/c=0.96 id=26% cov=79% ------SIDELDLSIYSKFLLKRHNILTLYDLFKIDKRVLERFYNISYKTLQSIERKMVKYG---------- >UniRef50_Q5LEL7(80-145:158) Putative uncharacterized protein n=4 Tax=Bacteroidales RepID=Q5LEL7_BACFN E=3e-07 s/c=0.85 id=22% cov=88% --LLDTPLDTFGLSQRIVRACRELGVFTVEHLLvhlrRFRFSRLYCVRNFGSGSAAETLRRLRQDGLT-------- >UniRef50_B6FKF7(9-60:60) Putative uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FKF7_9CLOT E=0.001 s/c=0.86 id=21% cov=74% --------DDIEMSSRLRNVLRRNGFESLEGVREYPKEYFIKFRNMGQATLQELYQICEE------------ # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * D 1 * * 928 * * * * * * * * 1075 * * * * * * * * 1 0 * * * * * * 3858 0 0 P 2 * * * 2850 * 3402 * * 2489 * * 3595 2560 4667 * 1962 * * * 4638 2 0 * * * * * * 4385 0 0 I 3 * * * * 4442 * * 2065 4572 1121 * 5450 * * * 5092 * 2636 * * 3 0 * * * * * * 4783 0 0 L 4 4666 * * * * * * 4696 4625 339 6059 * * * * 4719 * * * 4710 4 0 * * * * * * 5096 0 0 L 5 5627 * 2285 2341 4241 3879 * * 4612 3721 * 2903 * * * 3178 * 4810 * 4065 5 0 * * * * * * 5096 0 0 R 6 3937 * * 5110 * * 4431 5952 2703 3875 3672 4061 * 4557 2699 4541 2037 * * * 6 0 * * * * * * 5333 0 0 P 7 4892 * 6469 5949 * 6653 5120 * 6349 * * 5706 1210 4246 6043 1729 3900 * * * 7 0 * * * * * * 5474 0 0 V 8 * * * * * * * 727 * 1917 * * * * * * 6321 3076 * * 8 0 * * * * * * 5641 0 0 D 9 3652 * 1844 1674 * 4461 5574 * 4999 * * 5062 6398 * 6221 3417 3610 * * * 9 0 * * * * * * 5690 0 0 D 10 4970 6382 2307 1828 6755 5323 * 4531 7088 5743 6214 3242 * 3374 4902 3984 4613 5981 * * 10 0 * * * * * * 5694 0 0 L 11 4993 * * * 4548 * * 3239 5932 400 6386 * * * * 6465 * 5481 * * 11 44 5066 * 0 * * * 5729 1566 0 E 12 * * 1965 2189 * 2143 * * 4166 * * 2600 5325 4805 5899 * * * * * 12 19 6278 * 1000 1000 * * 5852 1000 0 L 13 * * * * 4009 * * 3524 * 365 4489 * * * * * * 6175 * 5963 13 22 6048 * 2000 415 * * 5874 1000 0 T 14 6532 6199 5686 6170 * 4839 * * 5176 * * 5339 3317 * * 665 3011 * * * 14 0 * * * * * * 5874 0 0 V 15 3283 * 5324 * 5339 6097 * 4520 5499 4637 * 6615 2898 3714 4644 4061 3441 1746 * 5930 15 0 * * * * * * 5874 0 0 R 16 6430 * * 5944 * * 5784 * 3789 * * 6055 3484 5168 482 6176 * * * 5673 16 16 6464 * 2000 415 * * 5996 1000 0 S 17 1668 6833 * 6511 * 6061 * 2802 * 4003 * * 6162 * * 2958 2393 3353 6174 * 17 0 * * * * * * 5996 0 0 A 18 3944 * * 5784 3373 * 7047 4163 4713 2680 6295 6771 * 4657 2969 4751 3504 3562 * 2612 18 0 * * * * * * 5996 0 0 N 19 6099 6188 6175 6176 5673 5640 5155 6877 3448 5358 * 940 * 6306 2841 4850 4519 * * * 19 0 * * * * * * 5996 0 0 C 20 1731 1819 * 6464 5643 5389 5597 4111 6174 4099 6514 * * * 5459 3670 6826 4025 * 5216 20 0 * * * * * * 5996 0 0 L 21 5157 5660 * * 4213 * * * * 174 6380 * * * * * * * * * 21 0 * * * * * * 5936 0 0 K 22 3410 * 4287 3056 * * 4761 6195 1570 6508 4875 5075 * 6082 2667 4549 4692 5732 * * 22 0 * * * * * * 5936 0 0 A 23 3591 * 6082 3648 * 6549 4792 * 2351 5086 * 4334 * 5638 1572 3674 5117 5431 * 6172 23 0 * * * * * * 6043 0 0 E 24 1557 6172 6928 3723 * 6530 4327 4692 * 4115 3654 3393 * 5975 4453 3342 6515 5002 * 5139 24 0 * * * * * * 6043 0 0 A 25 7046 * 4272 4471 * 847 5825 * 4021 * * 2191 6464 5704 * 6516 * * * * 25 19 6238 * 3585 126 * * 6042 1000 0 I 26 5213 5287 * * 4142 * * 716 5823 3794 * * * * * * * 2713 * 4654 26 0 * * * * * * 6042 0 0 H 27 * 5823 3871 3919 3458 6316 3236 * 4243 3341 7003 3053 * 5515 4494 7268 2580 4522 * 3740 27 0 * * * * * * 6042 0 0 Y 28 * * * * 5035 * * * 4429 3961 * 4671 * 6018 3962 3286 802 5955 * 4387 28 0 * * * * * * 6042 0 0 I 29 5694 * * * * * * 2298 * 1839 6174 * * * * * 4932 1262 6303 5524 29 0 * * * * * * 6042 0 0 G 30 3417 * 4893 2060 * 1671 * * 6036 5572 * 4893 * 4555 3308 3703 * * 6732 5688 30 0 * * * * * * 6042 0 0 D 31 4874 * 1014 2344 * 5860 5716 * 5282 * * 5300 * 2829 * 4840 6535 * * * 31 0 * * * * * * 6042 0 0 L 32 6238 * * * 4279 * * 5338 * 299 * * * * * * * 3359 * * 32 0 * * * * * * 6042 0 0 V 33 2820 4509 * 6278 5688 * * 3517 5305 1717 4924 6084 * 6190 5860 4781 4773 2281 * 6968 33 28 5716 * 2000 415 * * 6042 1000 0 Q 34 3381 * 3629 4478 * 3951 5411 * 2670 5344 5619 4251 * 3032 2710 3572 4355 5188 * * 34 0 * * * * * * 6042 0 0 R 35 5007 4851 * 7028 4119 * 6174 3998 3187 1882 4687 5098 * 4770 4898 6303 * 3299 * 2652 35 0 * * * * * * 6042 0 0 T 36 * * 2880 6219 * 4858 6682 6018 4293 5487 * 3749 3553 * 5716 1863 1920 * * * 36 0 * * * * * * 6042 0 0 E 37 4756 * 3383 2121 5716 5300 * 6070 2685 5339 6828 * 3941 3208 3356 4628 5134 5523 * 5198 37 22 6018 * 2000 415 * * 6042 1000 0 V 38 3467 * 2992 2183 * 5027 6459 * 3929 * 6197 4187 7113 3623 3784 3009 3672 5398 * * 38 48 6732 5417 1585 585 * * 6042 1000 0 E 39 4529 * 1494 2008 * 5482 * * 5337 * * 5745 * 3750 4079 4910 4386 4998 * 4593 39 33 6552 6424 2000 415 * 0 5955 1000 1613 L 40 * * * * 4283 * * 3519 * 381 4356 * * * * * * 4479 * * 40 0 * * * * 538 1683 5945 0 2056 L 41 4986 6002 * 4339 5873 * * 3158 3663 1608 3556 * * 6067 3025 4310 5134 5323 * 4620 41 0 * * * * 0 * 6041 0 1000 K 42 3246 5716 5433 3971 5823 5811 6099 * 2268 5466 7195 3229 * 4926 2445 2762 6084 * * 5952 42 0 * * * * * * 6042 0 0 T 43 5737 6411 * * 3448 * * 1605 6216 1972 4135 6197 * * * 5516 4522 3306 5285 5784 43 0 * * * * * * 6042 0 0 P 44 6071 * 5565 4693 * * 3411 5722 2141 6094 * 4953 2200 6216 2146 4693 * 6680 6185 5688 44 0 * * * * * * 6042 0 0 N 45 * * * * 6148 1171 5572 * * * * 1206 * * * 4561 * * * 4477 45 0 * * * * * * 6042 0 0 L 46 5722 * * * 2064 * * 2553 * 1717 3255 * * * * 5825 6229 2927 * * 46 12 * 6942 * * * * 6042 0 0 G 47 6090 * 5237 * * 259 5945 * 4958 * * 5717 6218 * * 4558 * * * * 47 0 * * * * * 0 6047 0 1000 K 48 3845 * 4740 3419 * 5681 * 5539 2525 * 6016 4199 2525 3720 2870 5045 6199 3942 * 5686 48 20 6180 * 1585 585 * 0 6047 1000 1000 K 49 4449 * * 4529 * 4449 6531 * 851 6202 5249 * * 6460 3381 4642 4325 4429 * 5950 49 0 * * * * 0 * 6047 0 1000 S 50 3061 5955 6278 * * 5568 5823 5722 * * * 6148 * 5201 4416 1078 2292 5185 * * 50 0 * * * * * * 6042 0 0 L 51 3549 6896 * 6893 5808 * * 2433 6539 1345 4355 * * * 3670 6313 * 2941 * 5628 51 0 * * * * * * 6043 0 0 T 52 3696 * 2895 1892 5952 6653 6275 7122 3843 6516 * 3808 6349 3345 3351 4090 4870 5702 * * 52 0 * * * * * * 6043 0 0 E 53 4961 * 5294 685 * * * 4059 4725 4738 5132 * * 3325 5193 5687 * 6653 * * 53 0 * * * * * * 6043 0 0 I 54 6214 6463 * * * * * 965 * 1736 * * * * * * 4758 2988 * * 54 0 * * * * * * 6043 0 0 K 55 5747 * 6294 2412 * * 6074 4256 2382 3118 * * * 3965 2360 6186 5825 3933 * 4298 55 0 * * * * * * 6051 0 0 D 56 3499 * 2762 1919 * * 5281 6955 3631 6302 * 3854 * 3104 3323 4285 5350 6481 * * 56 0 * * * * * * 6056 0 0 V 57 2127 * * 4886 * 4697 * 3086 2241 4463 6030 6686 * 5064 3405 3752 4366 4269 * * 57 0 * * * * * * 6020 0 0 L 58 * 5430 * * 4785 * * 3616 * 456 3950 * * * * * * 3932 * * 58 12 6907 * 0 * * * 6070 1000 0 A 59 2571 * 3740 2680 6742 4323 4779 5326 2894 4678 * 4279 6653 4875 3320 4389 4845 5138 * * 59 0 * * * * * * 6072 0 0 S 60 3576 * 5137 1748 5799 6146 * 4748 2313 4849 * 5470 * 3186 4379 4383 5081 5825 * 6766 60 32 * 5496 * * * * 6029 0 0 R 61 6417 * 5263 * 3427 * 3648 4148 3180 1950 4896 5733 * * 3449 5237 * 6507 * 2454 61 50 * 4866 * * * 0 5897 0 1733 G 62 5490 * 4819 6302 * 644 * * 6017 * * 2731 * 4545 5698 4494 5851 * * * 62 21 6133 * 0 * * 0 5517 1000 2391 L 63 5181 * 5662 * 4140 * 6109 3137 5615 786 5024 * * 5667 5002 * * 4728 * 4382 63 0 * * * * 910 1096 5506 0 2391 S 64 3450 * 6437 3506 6524 5871 2917 5970 2860 * * 5052 5248 4875 3310 2840 3116 * 5210 5541 64 0 * * * * 0 * 5422 0 1526 L 65 * * * * 1523 * * 5212 * 959 * * * * * 5996 5519 4257 * 5572 65 0 * * * * * * 5391 0 0 G 66 3989 * * 5088 * 314 * * * * * 4371 * 4995 * 5421 * * * * 66 0 * * * * * * 4807 0 0 M 67 4626 * * * * * * 3016 * 5191 750 4810 * 4904 5106 3111 * * * * 67 73 4334 * 1585 585 * * 4745 1000 0 R 68 3764 * 1884 3193 * * * * 3271 * * 2982 4501 * 2805 3450 * * * 4752 68 0 * * * * * * 4751 0 0 L 69 4628 * * * * * * 2723 5186 1143 * * * 4645 * 4609 3579 2616 * * 69 0 * * * * * * 4596 0 0 E 70 4561 4661 2374 1430 * * * * * * * * 1643 * * * 4880 * * * 70 0 * * * * * * 4322 0 0 N 71 * * 2270 1895 * 2155 * * 4169 * * 2746 * 4305 4503 * * * * * 71 0 * * * * * * 4310 0 0 W 72 * * * * 3288 * * * * * * * * * * * * * 1168 1143 72 0 * * 0 * * * 3259 0 0 //