HHsearch 1.5 NAME d1kx5b_ FAM FILE d1kx5b_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1kx5b_.a3m DATE Mon Mar 8 18:52:42 2010 LENG 102 match states, 102 columns in multiple alignment FILT 118 out of 152 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.5 EVD 0.3975 -0.8018 SEQ >ss_dssp CCCCSSSSSSSCSSCCCCCCSSSSGGGGSCHHHHHHHHHHTTCCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCCCSC CC >sa_dssp EEEDEEEEDEECEEEEEEECEEDDEDDDDDDDCBCEECDEEEDEECEEEDBEEDBDECDDDDDDBDECADDDBEEDEDEEDCDCADBDABEEDEEEDEEE EE >ss_pred CCCCCCCCCCCCCCCHHHHHCCHHCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCC CC >ss_conf 9844223320000100010102000035455999999996276521278999999999999999999999998542787648999999999749965476 89 >Consensus xxxxxxxxxxxkxxxkrxrkxxxdxixgIxkxxIrRlarrxGxxRISxdayexirxxxxxflxxIxxdaxxxxxhxkRKTitxxDVxxALkrxGxxlYGf gx >d1kx5b_ SGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGF GG >UniRef50_C4JE49(206-278:278) Predicted protein n=7 Tax=Onygenales RepID=C4JE49_UNCRE E=2e-05 s/c=0.68 id=28% cov=67% -------------------------IPSLPRGIVKKLATRfartgsGGKTRLSKETLSAIEQATDWFFEQASEDLTAFSKHSNRKTVDETDVIALMRR-- -------- >UniRef50_D0N7M9(12-95:474) Putative uncharacterized protein n=1 Tax=Phytophthora infestans T30-4 RepID=D0N7M9_PHYIN E=0.0002 s/c=0.56 id=25% cov=83% -------------GAGRLPHSLEEVLPDVV---VRRFLLRAGFRSSSDRAAAEVRRHVSDFFRRIVGCMVVMMQHDGRRNFRLIDVKRACEHFGIRMYGY -- >UniRef50_B0E6J7(1-85:194) Putative uncharacterized protein n=2 Tax=Entamoeba RepID=B0E6J7_ENTDI E=0.0004 s/c=0.54 id=20% cov=73% ----------------------------ILKIAAAQIAMSAGYTDAKESALETIADVMEMYIQEIGKKTHQISEHNGRTESSFIDLLFAMEQLGIDIFSF G- >UniRef50_B3L5R9(1009-1107:1192) Ccaat-box dna binding protein subunit b,putative n=1 Tax=Plasmodium knowlesi strain H RepID=B3L5R9_PLAKH E=6e-11 s/c=0.69 id=18% cov=81% ------------------KKIKPDSETLLPIANISRIMKRilPASAKVAKESKDIIRECVTEFIQFLTSEvsekggqthASDRCVRERRKTISGEDILFS MEKLGfndyvEPLYKY-- >UniRef50_UPI00005480BE(787-875:914) PREDICTED: wu:fc75c05 n=2 Tax=Danio rerio RepID=UPI00005480BE E=2e-14 s/c=0.90 id=23% cov=85% -----AGPQVSRRAPRQKRQTGTDVLP---KSYVMSIFKHFAKTKVASDVYPVINEILKKYFDRLADDLETYATHAKRKTIEVEDFELLMRRQG------ -- >UniRef50_UPI0000583F90(10-97:380) PREDICTED: similar to TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000583F90 E=2e-11 s/c=0.79 id=25% cov=81% -------------------KATDDKKYAIfSKDSIKTMAESAGHERLSEETAAILAEDVCYRLREAVQASAQFMKHSKRKRMTSDDVNKALRWSDvEPIH GYG- >UniRef50_O93641(85-143:154) Histone H3/H4 n=1 Tax=Methanopyrus kandleri RepID=O93641_METKA E=0.0009 s/c=0.76 id=26% cov=56% ------------------------------RATVRRILKRAGIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDV-------------- -- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 * * * * * * * * * * * * * * * 369 2147 * * * 1 0 * * * * * * 2406 0 0 G 2 * * * * * 330 * * * * * * * * * 2291 * * * * 2 0 * * * * * * 2531 0 0 R 3 * * * 2886 * * * * 2272 * * * * * 605 * * * * * 3 0 * * * * * * 3217 0 0 G 4 2658 * * 3166 * 1022 * * 3383 * * 3644 * * * 4018 * * * * 4 0 * * * * * * 3665 0 0 K 5 * * * 3286 * 2381 * * 1249 3750 * * 2706 * * * * 4126 * * 5 0 * * * * * * 3815 0 0 G 6 2277 * * * * 1045 * * 3818 3031 * 3923 * * * 4320 * * * * 6 0 * * * * * * 4097 0 0 G 7 * * * * * 739 * 3865 2840 3529 * * 4102 * * 4389 * * * * 7 0 * * * * * * 4137 0 0 K 8 * * * 3662 * * * * 2200 3830 * 4233 3391 4878 2346 2509 * 3677 * * 8 0 * * * * * * 4236 0 0 G 9 * * 3652 * * 1576 * * 2865 * * 3747 * 3391 2730 * 3752 * * 4233 9 0 * * * * * * 4236 0 0 L 10 2906 * * 3865 * 3779 * 2528 4899 2027 * * * * 4609 * 4337 2454 * * 10 48 * 4940 * * * * 4112 0 0 G 11 1553 * * * * 1208 * * * * 4673 * * * * 2417 * * * * 11 0 * * * * * 0 4127 0 1000 K 12 3947 * * * 3952 * * 4141 816 4318 * * * * 2354 * * * * * 12 63 4556 * 1585 585 0 * 4100 1000 1000 G 13 * * * * 4019 1636 4357 3810 * * 4000 * 3548 * 3861 3145 4859 5010 * 3307 13 0 * * * * * * 4090 0 0 G 14 2482 * * * * 1194 * 4348 4084 4571 * * * * 4100 3069 * 4147 * * 14 77 * 4267 * * * * 4298 0 0 A 15 1358 * * * * * * 3896 * 4678 * * 2337 2268 * 3844 5135 * * * 15 0 * * * * * 0 4233 0 1000 K 16 * * * 4326 * 3118 * * 824 * * * * 4991 2345 * 4585 * * * 16 0 * * * * * 0 4441 0 1000 R 17 4323 * * * * * * * 3026 * * * 4175 3428 559 * * * * * 17 45 * 5029 * * * 0 4481 0 1000 H 18 * * * 4243 * * 1778 * 2554 2418 5243 * * 4081 4241 * 4324 4700 * 3804 18 0 * * * * 870 1143 4466 0 1693 R 19 * * * * * * 4990 * 2274 * 4664 3612 3231 5140 1088 4826 * * * * 19 0 * * * * * 0 4845 0 1000 K 20 * * * * * * 4145 * 543 * * 4521 * 4458 2573 * * * * * 20 54 * 4779 * * * 0 5047 0 1000 V 21 4211 5807 * 4470 * * * 2530 4457 4239 4333 5073 * 3906 4270 3556 4384 2450 * 3357 21 0 * * * * * 0 4977 0 1650 L 22 * 5113 * * * 4394 * 5592 3741 1556 * 3845 * 3422 * 2129 3374 * * * 22 0 * * * * 893 1115 4937 0 1650 R 23 * * 4351 4184 * * * * 2182 4959 * * 4287 * 1302 2820 4468 * * * 23 0 * * * * 0 * 5007 0 1000 D 24 * * 876 3401 * * 2812 * 4590 5041 * 5407 * 4859 * 3505 * * * * 24 60 * 4626 * * * * 5067 0 0 N 25 5538 5617 * * * 3181 * 5850 3444 * * 1993 * * * 1878 3577 2926 * * 25 48 * 4948 * * * 0 4975 0 1000 I 26 5212 4780 4873 2725 * * * 994 4364 2644 * * * * * * 4620 * * * 26 0 * * * * 939 1063 4954 0 1576 Q 27 * * 3499 4926 3888 * * 4933 4268 4656 4066 4280 1903 2926 4603 * 4308 * * 3557 27 232 3268 4474 2171 362 * 0 4974 1655 1000 G 28 3814 * 4229 * 4832 857 * * 5284 3292 * * * * * 3024 * 4735 * * 28 39 5217 * 2000 415 1021 980 4779 1000 1724 I 29 * * * * * * * 679 * 2188 * * * * * * * 2680 * * 29 46 4996 * 0 * * 0 5336 1000 1000 T 30 4328 * * * * * * 6110 5561 4416 * 5208 2550 * * 2212 1571 3088 * * 30 114 5542 4204 2807 222 0 * 5336 1000 1000 K 31 5178 * 5537 5135 * * * 4816 650 * * 4392 5263 * 2955 5168 5699 * * * 31 0 * * * * * 0 5357 0 1707 P 32 2179 5741 5002 * * 2728 5562 4523 3502 5614 * 5300 1945 4693 * 4235 5151 * * * 32 20 6191 * 0 * * 0 5362 1000 1707 A 33 1798 4546 4066 6257 5201 * * 4730 * 4156 5459 3728 3586 * * 2697 4028 4642 * 4682 33 0 * * * * 917 1089 5391 0 1707 I 34 3254 * * * 5049 * * 625 * 5538 5782 * * * * * * 2500 * * 34 0 * * * * * 0 5640 0 1000 R 35 4174 * * * * 4688 * 5387 2284 6156 4930 * * 4346 1014 4220 4981 * * * 35 38 5272 * 4322 74 * 0 5640 1000 1000 R 36 * * 5292 * * * * * 3433 * * 6584 * 4228 438 4122 5485 * * * 36 0 * * * * * 0 5721 0 1000 L 37 * * * * 3484 * * 1668 * 968 4076 * * * * * * 5292 * * 37 0 * * * * * 0 5721 0 1000 A 38 630 * * * 4935 6608 * 4021 * 3632 3614 * 5262 * * * 6014 4463 * * 38 0 * * * * 0 * 5721 0 1000 R 39 * * * 3142 * * 5543 * 2203 4334 4920 5702 * 5085 1027 6044 6532 * * * 39 92 4017 * 1985 420 * * 5724 1915 0 R 40 * 6111 6550 4534 * 5662 3653 4642 4195 * * 4384 * 4962 1242 2206 5767 * * * 40 110 3764 * 2267 336 * * 5724 2529 0 G 41 1874 5103 6111 5807 4682 1284 5210 5767 5304 5775 * * 5709 6056 * 4365 * 5306 * 5702 41 38 5281 * 362 2170 * * 5724 1630 0 G 42 3482 * 5312 * * 298 * * * * * 6377 * * * 4630 5673 * * * 42 19 * 6231 * * * * 5734 0 0 V 43 2856 5211 * * 5022 4706 5496 3351 3505 * 5273 3962 * 5703 5640 3476 * 1711 * 4929 43 0 * * * * * 0 5727 0 1000 K 44 3466 * 4939 2828 5314 4445 5725 4879 1540 * 5650 * * 5843 3565 6803 3855 4306 * 5819 44 61 4605 * 542 1674 0 * 5723 1455 1000 R 45 * * 4998 * 6364 * * 6342 2410 * * 4672 5149 * 602 5071 * * * * 45 0 * * * * * * 5821 0 0 I 46 4216 * * * * * * 1040 * 3481 3632 * * * * 5044 * 1948 * * 46 0 * * * * * * 6166 0 0 S 47 3388 * 5111 6035 * 4444 * * 4421 5891 * 4527 * 3817 * 743 4683 * * * 47 0 * * * * * * 6166 0 0 G 48 2435 6113 2841 4128 * 2854 * * 2162 * * 3761 4147 * 5216 3557 * * * * 48 0 * * * * * * 6163 0 0 L 49 4811 * 1229 2762 * 4803 * 5405 * 4916 5487 5232 * 5546 4600 3371 3480 * * * 49 0 * * * * * * 6163 0 0 I 50 1386 3940 * * * * * 2075 * 4793 * * * * * 5482 3650 2499 * * 50 0 * * * * * * 6163 0 0 Y 51 3900 * * * 5719 * * 6354 3178 3029 4872 * * * 3925 5115 5880 3632 * 1177 51 0 * * * * * * 6176 0 0 E 52 3577 * 1873 1491 * 6336 * 5976 3741 * * 5347 3809 4550 * 4946 * 6230 * * 52 0 * * * * * * 6176 0 0 E 53 2572 6638 4504 1747 6230 * 6006 3647 5473 3656 * 5880 * * 6324 5568 2737 4087 * 6664 53 0 * * * * * * 6176 0 0 T 54 3931 * * * 6236 * * 1638 * 2150 4980 * * * * 5206 3646 2235 * 5420 54 0 * * * * * * 6175 0 0 R 55 2829 5973 * 4069 * * * 6776 5990 5800 4381 3851 * 3014 1357 5005 6370 3914 * * 55 0 * * * * * * 6195 0 0 G 56 5592 * 3520 1826 6321 4205 6594 5910 2634 5969 * 4012 * 3339 3456 4401 5184 * * 6325 56 0 * * * * * * 6306 0 0 V 57 2516 2747 4892 5248 6157 * 4684 3082 * 5413 5513 * * * * 4719 6179 1813 * 3981 57 0 * * * * * * 6306 0 0 L 58 4437 4910 * 6581 4722 * * 3325 * 1705 4634 * * * * 3532 3550 2253 5955 5176 58 0 * * * * * * 6306 0 0 K 59 * 4274 3412 2026 * * * 4560 2168 4600 * 3482 * * 4654 3439 4732 4515 * * 59 0 * * * * * * 6313 0 0 V 60 3732 * 3241 1721 5937 * * 4639 4352 4280 5053 6038 * 4935 4550 4809 5169 3934 3662 5059 60 0 * * * * * * 6468 0 0 F 61 5745 * 6281 * 1295 * * 6055 6237 4733 6327 * * * 1575 * * 7970 * 2806 61 0 * * * * * * 6261 0 0 L 62 4383 * * * 2797 5301 * 2102 * 1429 5283 * * * * * 5760 2897 * * 62 0 * * * * * * 6249 0 0 E 63 4584 * 5490 2051 * 4991 4432 5455 2896 5041 * 6876 * 4221 2168 3708 3872 * * * 63 0 * * * * * * 6194 0 0 N 64 5517 * 3829 1998 3730 * 5399 6368 4438 5092 3556 3907 * 2411 4326 4806 4768 6829 * * 64 29 5648 * 0 * * * 6194 1000 0 V 65 4442 * * * * * * 1048 * 2990 5532 * * * * * 6175 1694 * * 65 0 * * * * * * 6194 0 0 I 66 3134 4969 * * 5421 3468 * 2284 5796 2922 5181 * * * * 2931 3138 3147 * * 66 0 * * * * * * 6194 0 0 R 67 5182 6368 4116 2994 * 4516 4989 7125 3836 4948 * 4650 * 2469 2495 2834 6880 * 4840 6519 67 0 * * * * * * 6190 0 0 D 68 6588 4705 1332 2021 * * * 6177 3742 * * 5184 * 3876 3767 * 6225 6053 * 5541 68 11 7009 * 3170 170 * * 6193 1000 0 A 69 1069 5170 * * * 6595 * 4301 * 2618 4655 * * * * 3069 4901 3655 * * 69 0 * * * * * * 6191 0 0 V 70 3117 4153 * 4103 * 4742 5844 3263 5732 4777 5805 3444 * 6226 5505 3138 3870 2196 * 6567 70 32 5499 * 2322 322 * * 6191 1449 0 T 71 3091 * 3738 2853 * * * 3649 2330 4205 5741 7227 * 4305 5597 4165 2781 4692 * * 71 0 * * * * * * 6190 0 0 Y 72 5418 3976 6360 * 2148 6059 5652 3172 5577 3056 5344 6198 * * 5051 * * 4071 * 1941 72 0 * * * * * * 6190 0 0 T 73 2061 2737 * * * * * 5939 6753 4535 2186 * * 6352 * 3467 2574 4286 * * 73 45 5024 * 1246 790 * * 6190 1989 0 E 74 6209 * 3904 1906 * * 4329 4830 2650 6366 * 4503 4505 3378 3063 5030 4531 5750 * * 74 0 * * * * * * 6190 0 0 H 75 5702 4871 * 5951 * 5053 808 6985 4517 5483 5741 5899 7021 5699 5313 3655 * 7132 * 3625 75 12 6861 * 2322 322 * * 6190 1000 0 A 76 1606 7166 4325 3212 7108 2913 5475 * 5008 * * 4645 * 5723 4844 2307 5860 * * * 76 0 * * * * * * 6191 0 0 K 77 5549 * * 4888 * 2177 5994 * 1199 5296 6435 3466 * 6930 3146 5392 * * * * 77 10 7200 * 2322 322 * * 6293 1000 0 R 78 4810 * * * * * 5705 * 3588 5533 * * * * 296 5261 * * * * 78 0 * * * * * * 6296 0 0 K 79 5593 * 4680 * * 7086 * * 779 * 6264 7084 6326 4540 3448 4414 3340 4762 * * 79 0 * * * * * * 6296 0 0 T 80 5533 * * 5430 * * 7262 5624 3509 4700 5382 5275 * 5025 5373 5261 646 4946 * * 80 31 5533 * 2000 415 * * 6296 1000 0 V 81 * * * * 5275 * * 1605 5261 2321 4682 * * * * 5822 * 1463 * * 81 0 * * * * * * 6296 0 0 T 82 5245 * 4015 3992 6396 * 7209 6537 3351 5189 5556 3836 5533 6273 4853 3024 1327 * * 6350 82 38 * 5261 * * * * 6296 0 0 A 83 2377 4225 6195 3984 4210 3403 * 4381 * 4525 5999 * 3553 6613 6574 4804 2458 3353 * * 83 0 * * * * 0 * 6213 0 1000 M 84 4502 * 2840 2288 * * 6954 4355 4287 5002 4406 4331 6324 3889 3558 2747 4028 * * * 84 0 * * * * * * 6296 0 0 D 85 6160 * 261 * * * 3821 * 5261 * * 5612 * 5533 * * 6279 * * * 85 11 6981 * 1585 585 * * 6296 1000 0 V 86 * * * * 5334 * * 1608 * 3413 5238 * * * * * * 925 * * 86 0 * * * * * * 6296 0 0 V 87 5758 5561 3190 4061 6537 * * 2561 3556 2569 * 3651 * 4528 6888 5065 5432 2534 * * 87 8 7464 * 1000 1000 * * 6195 1000 0 Y 88 4250 5520 * 5372 2935 5986 4529 * 4486 2451 5999 4375 * 4739 3225 4657 3818 5733 4646 3229 88 0 * * * * * * 6195 0 0 A 89 632 * * * * * * 5693 * 2771 * * * * * 4289 4568 3386 * * 89 0 * * * * * * 6195 0 0 L 90 5690 5095 * * 5681 * * 4773 * 790 2001 * 5519 * * * 6271 4947 * * 90 5 8254 * 0 * * * 6198 1000 0 K 91 4728 * * 3019 * 5206 6822 * 1735 * * 4434 * 3427 1638 4802 7399 * * * 91 82 4182 * 0 * * * 6196 1949 0 R 92 4936 * 4570 5392 * 4814 5050 * 3895 3762 6552 5465 * 5621 1065 4995 4453 3782 6205 * 92 5 8142 * 0 * * * 6278 1000 0 Q 93 6054 5515 * * 4336 * * 3748 3495 1715 4249 4433 * 2506 4013 4369 5196 5494 * 6487 93 12 * 6952 * * * * 6276 0 0 G 94 * 6249 4317 * * 586 * 4941 * 6598 * 2505 * 5542 * * * 5067 * * 94 422 1979 * 833 1189 0 * 6116 3180 1000 R 95 4492 * 5471 1600 3600 * 5038 3491 4749 5094 5362 4556 * 4717 2970 5033 5536 5187 * 5456 95 0 * * * * * * 5875 0 0 T 96 * * 4926 3929 * 5326 * 6123 4694 6247 5937 3855 1201 4473 2815 4552 4052 * * * 96 0 * * * * * * 5834 0 0 L 97 4351 * * 5402 * * 4607 2193 * 1579 4245 * * 5016 * 5716 * 2972 * 3281 97 50 4886 * 2000 415 * * 5834 1000 0 Y 98 * * * * 4053 * 5228 3626 * * * * * 5452 * * * * * 305 98 0 * * * * * * 5710 0 0 G 99 * * 4625 * * 179 * * 5062 * * * * * * 4430 * * * * 99 0 * * * * * * 5135 0 0 F 100 * * * * 771 * 4654 * * * * * * * * * * * * 1417 100 0 * * * * * * 4998 0 0 G 101 * * * 2880 * 371 * * 3457 * * * * * * * * * * * 101 0 * * * * * * 3753 0 0 G 102 * * * * * 0 * * * * * * * * * * * * * * 102 0 * * 0 * * * 2557 0 0 //