HHsearch 1.5 NAME d1kx3c_ FAM FILE d1kx3c_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1kx3c_.a3m DATE Mon Mar 8 18:18:56 2010 LENG 107 match states, 107 columns in multiple alignment FILT 117 out of 205 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.6 EVD 0.4290 0.0261 SEQ >ss_dssp CCCHHHHHTCSSCHHHHHHHHHHTTSCSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHTSHHHHHHTTTCCCTTCCCCCCCCG GGSSSCC >sa_dssp EEEDBDEDECECDADEBBDDCEEDEEEEECEEEDADEDADDDCEDCDCCEECACDBBEEDEEEEDDDCBCBBBACECEEBDEECEEDECEEBEECEEEEE EEEEEEE >ss_pred CCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCH HHHCCCC >ss_conf 9765211164057999999986073115003348999999999999999999999996559717409999998507877898847820258984773017 8610379 >Consensus xxsxsxraxLxFPvxRixrilkxxxxxxrisxxapvxlaaxlEylxxeilexAxxxaxxxkxkxIxpxhixxAIxxdexlxxLxxxvxixxGgvxpxixx xllxxxx >d1kx3c_ AKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQS VLLPKKT >UniRef50_Q8SSG3(30-114:128) Histone H2A n=1 Tax=Encephalitozoon cuniculi RepID=H2A_ENCCU E=6e-12 s/c=0.85 id=27% cov=80% --------------SQIKKIMKDRTR-MRISKDALVAVSACVMYLISEITDGAKNVASTDGKKKVMPKHINNAICNDTELHFVGHDWLIKNGGMKSYIAP ------- >UniRef50_B5DK13(121-206:1618) GA28770 n=7 Tax=Arthropoda RepID=B5DK13_DROPS E=3e-11 s/c=0.80 id=28% cov=77% ----SKKKKSVLPTERVHTLLQKDVLQYKIDSSVSAFLVAVLEYISADILKMAGDYVCKISHCEITKEDIEVVMNADRVLMDMLN--------------- ------- >UniRef50_UPI00015B431F(3-95:226) PREDICTED: similar to NC2alpha n=1 Tax=Nasonia vitripennis RepID=UPI00015B431F E=1e-09 s/c=0.69 id=16% cov=85% --SKKKKYNARFPPGRIKKIMQTDEEVGKVAQAVPIIISRTLELFVHSLLTKTMQITSAKQAKTLSPSHMKQCILSEsrfDFLKDLVKNLPDASG----- ---------- >UniRef50_A8X3Y1(140-227:325) C. briggsae CBR-NFYC-1 protein n=2 Tax=Caenorhabditis briggsae RepID=A8X3Y1_CAEBR E=7e-07 s/c=0.62 id=18% cov=68% ------------PMARVKKIMKidEDVRCLNIASDAPIFMAQAAEFFIEEMTAMGWQYVSEARRRILQKSDVATAVKKNEQFDFLL-------------- --------- >UniRef50_A9TUW3(195-288:304) Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TUW3_PHYPA E=0.0002 s/c=0.50 id=28% cov=76% ASSRAKKSQqslltLAFPISRVRRLVKSEGDIQWVGVEAGFLIAKATEIFLEKLVEDAFERMQGNGQASILYPHLSSHVASSERL--------------- ------------ >UniRef50_C4M2S5(134-210:212) Nuclear transcription factor, putative n=2 Tax=Entamoeba RepID=C4M2S5_ENTHI E=5e-09 s/c=0.81 id=19% cov=69% -----------FPPARIRKLTKINIDNKQLKTETVEILSRACELFIKDLTTRAGYITSYSKRKVIKKDDIVKAIVSDEKFDFLI---------------- ------- >UniRef50_Q8LMX6(50-141:335) Os10g0191900 protein n=4 Tax=Oryza sativa RepID=Q8LMX6_ORYSJ E=9e-07 s/c=0.59 id=21% cov=85% --------ELILPISRVKNIIHAKEGGMMLSADTPAFVTKLCELFVQELILRAWVCANSHNREIILGTDIAEAITTTESYHFLANVVHGHQalGSNIPEI --------- >UniRef50_A3LRE3(93-174:284) DNA-directed DNA polymerase epsilon, subunit C n=1 Tax=Pichia stipitis RepID=A3LRE3_PICST E=3e-08 s/c=0.73 id=25% cov=34% --------------------------------------------------------AKMDKRKKIQYRDFSTSVASHDALAFLSDTVPRTQ--------- ------- >UniRef50_Q8SQT6(3-85:95) CLASS 2 TRANSCRIPTIONAL REPRESSOR similar NCB1_yeast n=1 Tax=Encephalitozoon cuniculi RepID=Q8SQT6_ENCCU E=9e-05 s/c=0.58 id=28% cov=60% -KQESQKKKLTrFPISRLKRIMQLNEDIGKIGASVPVVASKAIEMFLTEIVGLTLKEARKKSSSR----------------------------------- -------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * A 1 317 * * * * * * * * * * * * * * 2341 * * * * 1 0 * * * * * * 2558 0 0 K 2 * * * 3012 * * * * 1967 * * * * 1758 1908 4104 * * * * 2 0 * * * * * * 4261 0 0 T 3 4316 * * * * 3587 * * 4561 5156 * * * 4872 * 684 2841 * * * 3 0 * * * * * * 4483 0 0 R 4 * * * 5099 * * 4532 * 1497 5518 * * * 4025 1294 5607 4021 * * * 4 0 * * * * * * 4530 0 0 S 5 3609 * * * * * * * 3193 * * * 3367 * 5360 631 4586 * * * 5 0 * * * * * * 4734 0 0 S 6 2004 * * 5660 * * * * 2350 5010 * 5875 * 3178 4757 2307 3894 3840 * * 6 0 * * * * * * 4898 0 0 R 7 * * * * * 4941 * * 1313 * * * * * 882 * * * 5477 * 7 19 6262 * 0 * * * 4990 1000 0 A 8 874 5679 * * * 4014 * * 4188 5698 * 5497 4941 * * 2685 5856 5559 * 4318 8 0 * * * * * * 5127 0 0 G 9 6086 * 6625 2441 * 1238 4860 * 3238 * * 4405 5541 5005 * 3581 4534 * * * 9 80 4213 * 2111 380 * * 5338 2124 0 L 10 5997 * * * * * * 4066 * 436 5189 * * * * 4112 4411 4566 * 6523 10 0 * * * * * * 5510 0 0 Q 11 4514 * * 6345 5299 * 6524 3236 4555 4592 * 4762 * 1907 4023 3054 3038 3179 * * 11 23 5963 * 0 * * * 5692 1000 0 F 12 5349 * * * 472 * * 4118 * 2537 * * * * * * * 5342 * * 12 0 * * * * * * 5863 0 0 P 13 6157 5367 * * * * 6205 5993 5773 5707 * * 371 * 5871 3447 6255 * * * 13 0 * * * * * * 5883 0 0 V 14 4885 5891 * * * * * 2901 * 3510 3700 * 4617 * * 6955 3480 965 * * 14 0 * * * * * * 5874 0 0 G 15 2087 6425 4426 6349 * 1603 * * 5414 * * 4397 * * * 1929 4993 * * * 15 0 * * * * * * 6012 0 0 R 16 * 5394 * 5576 * * 5401 * 3517 4926 * * * 3962 459 * * * * 5656 16 13 * 6781 * * * * 6022 0 0 V 17 5610 6665 * * 3365 * * 1180 * 5064 4992 * * * * * 5424 1529 * * 17 0 * * * * * 0 5992 0 1000 H 18 5369 * 4472 2698 4458 4815 2232 * 1700 6665 * * * 5894 3224 6702 * * * 4979 18 0 * * * * * 0 5992 0 1000 R 19 6814 * * * * * 4803 6212 1896 6468 * 4393 6325 4617 1038 4652 5391 * * 6558 19 20 6212 * 0 * 0 * 5992 1000 1000 L 20 6056 6787 * * 5047 * 5109 1684 6190 1913 5375 * * 6036 6168 5039 * 4016 3493 3443 20 0 * * * * * * 6015 0 0 L 21 5872 * * * 5823 * * 4260 * 1009 1537 * * * * * 5934 4182 * * 21 18 * 6295 * * * * 6015 0 0 R 22 * 5870 * 6811 6614 6744 5861 * 1331 5977 * * * 2317 2164 6212 5277 5079 5005 * 22 16 6512 * 1000 1000 0 * 6004 1000 1000 K 23 3109 * 3358 2369 * 5741 5873 5380 2195 4975 4722 5326 * 4989 4374 3196 5445 6889 * * 23 34 * 5421 * * * * 6017 0 0 G 24 4113 * 1807 3339 * 1852 * 4471 5530 5106 5326 4634 * * 3823 6504 5587 5861 * * 24 0 * * * * 0 * 5953 0 1000 N 25 6287 4772 4351 2860 * 6296 5814 4119 4372 6172 * 2978 4331 3692 2436 4177 3907 4239 * * 25 25 * 5873 * * * * 6017 0 0 Y 26 6220 * 2409 3776 4909 5212 4289 5067 5497 3014 5678 5937 5740 * 4445 5163 4605 4966 * 2079 26 29 7374 6188 0 * 0 * 5977 1000 1000 A 27 1989 3966 6409 * * 3966 4824 3114 * 6508 * 4525 7601 4567 6169 3157 4211 2756 * 5169 27 72 5854 4986 761 1286 0 * 6009 1872 1000 E 28 * 5982 4741 4238 4887 2919 5506 6220 2737 4837 4379 4383 4157 3830 3266 5490 * 4419 4526 3863 28 31 5554 * 703 1374 * 0 5898 1897 1000 R 29 * 4022 * * 5264 * 5784 4968 2316 * 3703 6510 * 4588 1206 4494 6560 * 6304 5009 29 21 6115 * 0 * 0 * 5909 1000 1000 V 30 5862 3413 * * 5299 * * 1650 * 2629 4767 * 5583 * * * 7113 1651 * * 30 14 * 6648 * * * * 6025 0 0 G 31 3024 * 3901 7147 * 2160 4283 * 5998 * 6453 4116 * 7495 * 1347 6170 6039 * 6027 31 0 * * * * * 0 6135 0 1000 A 32 2452 4752 4034 4110 * 5373 6289 4850 4203 5990 * 4711 6485 2971 4952 2157 4079 6302 * 6137 32 0 * * * * * 0 6176 0 1000 G 33 3504 * 3344 2601 * 3369 6274 * * 6498 4992 4779 6137 4621 4991 2300 3262 6156 * 4254 33 0 * * * * * 0 6176 0 1000 A 34 790 6260 * * * 6963 * * * 5971 6466 * * * 4991 4727 2571 2880 * * 34 0 * * * * * 0 6176 0 1000 P 35 2837 6365 * * * 6267 * 5829 * 3724 6748 6235 1176 5167 * 2900 5094 3549 * * 35 0 * * * * * 0 6163 0 1000 V 36 5097 * 5631 6006 3671 * 5575 2346 5385 3455 6973 * 7515 6652 * 4990 * 1185 * 5091 36 0 * * * * * 0 6163 0 1000 Y 37 3744 * * * 2585 * * 4350 * 2149 6206 * * * * 5663 5385 4557 * 1379 37 0 * * * * * 0 6163 0 1000 L 38 6082 6147 * * 3835 * * 2804 * 1167 3653 * 4990 * * 5791 4553 2828 * * 38 0 * * * * * 0 6163 0 1000 A 39 1447 5418 * * * 3657 * 5071 * 5631 * 5300 * * * 1883 2745 4832 * * 39 5 8153 * 3000 193 * 0 6163 1000 1000 A 40 988 4990 5073 * * 4815 * * 2561 5203 6960 * * 5964 3446 6463 5028 4915 * 6421 40 21 6132 * 4170 82 * 0 6163 1000 1000 V 41 1677 4848 * * 6208 5395 * 2826 * 5053 4642 * * * 4970 4197 4699 1841 * * 41 0 * * * * * 0 6201 0 1000 L 42 3920 3615 * * * * * 3586 * 962 4179 4429 * * * * 2828 6250 * * 42 0 * * * * * 0 6201 0 1000 E 43 6261 * 4972 271 * 4622 * * 6139 * 6289 5889 * 5116 6254 * * * * * 43 0 * * * * * 0 6352 0 1000 Y 44 6287 * 6325 * 4796 * 5845 3377 5365 2473 4232 3665 * * * 6599 * * 6052 1110 44 0 * * * * * 0 6367 0 1000 L 45 * * * * 1389 * * 4080 * 1115 5305 * * * * 5008 * 4602 * * 45 0 * * * * * 0 6367 0 1000 T 46 3263 5864 * * * 5386 * 2515 * 2586 4174 7318 * * * 4190 2144 2552 * * 46 0 * * * * * 0 6526 0 1000 A 47 2031 5545 5948 2730 6829 4615 4949 5293 3451 4387 5667 7098 4435 4000 5727 3644 4290 5277 * 6837 47 0 * * * * * 0 6766 0 1000 E 48 6881 * 3675 992 6435 * 6109 * 3340 5303 * 3845 * 6032 4222 3770 5920 * * 4958 48 12 * 6926 * * * 0 6766 0 1000 I 49 5266 * * * 3953 * * 1963 * 1408 5636 * * * * * 5294 2117 * * 49 0 * * * * 922 1082 6756 0 1319 L 50 4348 7021 * * 5688 * * 3188 * 1251 4039 6987 6621 * * 4323 3173 2804 6495 * 50 0 * * * * * 0 6675 0 1000 E 51 5507 7167 3146 1011 * 4958 6909 6403 3449 4423 5809 5728 * 5010 6548 4626 4250 * * * 51 0 * * * * * 0 6402 0 1000 L 52 4265 4983 4872 3533 * 4856 5928 5938 3470 1538 3543 * * 4901 3266 * 5116 4891 * 6942 52 0 * * * * * 0 6402 0 1000 A 53 765 * * * * 4053 * * * * * * * 4994 * 2382 3445 4783 * * 53 17 6397 * 0 * * 0 6493 1000 1000 G 54 3384 4718 4994 * 4577 1398 5153 5473 5965 5271 5729 5158 * * 6848 4168 * 4778 3232 3901 54 0 * * * * * 0 6493 0 1000 N 55 6571 * 4407 3199 * 5808 6002 4840 3092 * 4680 1705 * 3714 5543 3651 3969 4397 * 6221 55 0 * * * * * 0 6405 0 1000 A 56 2520 5004 * 2906 5633 5935 4399 3678 6004 * 5416 3873 * 4415 5383 4023 5755 2611 * 3695 56 17 6434 * 1000 1000 * 0 6288 1000 1000 A 57 1013 5846 * * * * * 6130 * 5369 5706 * 4624 * 4715 4042 2170 3880 * * 57 0 * * * * * 0 6285 0 1000 R 58 4939 5303 5496 3425 * 6797 4887 * 2359 4886 * 3880 * 3235 2161 3300 6567 5310 5624 * 58 0 * * * * * 0 6285 0 1000 D 59 4315 * 2271 2691 6219 4685 6525 4502 3052 3962 5695 3178 * 4805 5956 4061 4997 * * 5459 59 0 * * * * * 0 6292 0 1000 N 60 5442 6407 3913 4299 6230 5346 4285 4280 3343 4477 6487 2428 5087 4147 3573 2615 4884 * * * 60 15 6640 * 1000 1000 * 0 6292 1000 1000 K 61 * * 6487 * * 2637 4248 * 1301 5087 * 2999 * 4899 3426 3703 6407 * * * 61 0 * * * * * 0 6292 0 1000 K 62 3315 6487 * 6581 * 6718 4673 * 2266 4570 6745 * 5717 3998 1654 3532 4288 4922 * * 62 43 5077 * 1051 951 * 0 6292 1876 1000 T 63 5058 6323 * 4980 * 7400 6958 6117 1229 * 5446 5387 * 4063 2627 4088 3605 5290 * 4812 63 15 6572 * 0 * * 0 6292 1000 1000 R 64 5087 5329 * 4280 6038 * * 4657 3764 4567 6961 4803 * * 1509 3777 2383 4764 * 5223 64 0 * * * * * 0 6292 0 1000 I 65 * * * * 5783 * * 647 * 2322 5389 * * * * * * 3064 * * 65 17 * 6457 * * * 0 6290 0 1000 I 66 5727 * * 6567 * * 5980 3414 3757 4271 6010 3452 * 2907 5121 2835 1736 5269 * * 66 0 * * * * 615 1526 6314 0 1381 P 67 3618 * * 6427 * 5485 * * 3496 3997 * 6231 1054 6194 4214 6710 5210 5763 * 3108 67 0 * * * * * 0 6293 0 1000 R 68 6050 4971 4293 3473 6710 * 5158 5848 3365 6524 * 4772 5693 3196 1896 2883 5674 5435 5772 5721 68 0 * * * * * 0 6293 0 1000 H 69 * * 1826 * 6429 * 775 6321 5045 4565 6600 6076 * * * * 6434 * * * 69 0 * * * * * 0 6293 0 1000 L 70 * 5038 * * 5414 * * 1498 * 1310 4197 * * 5767 * * * 3110 * * 70 0 * * * * * 0 6292 0 1000 Q 71 3748 4205 4173 4980 5353 7585 3678 6258 2561 4128 5301 4646 * 3409 3957 2927 4054 5561 * * 71 0 * * * * 0 * 6274 0 1000 L 72 4501 * * 4219 * * 5453 4965 4109 1853 4550 4578 * 2985 4124 3173 4034 4314 5501 * 72 0 * * * * * * 6272 0 0 A 73 535 4305 * 6429 * 4649 5706 * * * * * * * * 4213 4481 3476 * * 73 44 * 5064 * * * * 6272 0 0 V 74 6227 * * * 6132 * * 1223 * 4301 4278 5844 6707 * * 7255 * 1292 * * 74 0 * * * * 0 * 6152 0 1000 R 75 3555 3529 * 4661 * 4271 3964 * 2982 3926 * 5190 * 4173 1976 4251 5516 5083 * 4657 75 7 * 7758 * * * * 6193 0 0 N 76 4184 6280 6571 5730 * 3822 6421 * 3260 * 5165 1499 5075 4574 4307 2955 3589 * * * 76 18 * 6356 * * * 0 6182 0 1000 D 77 * * 948 5432 * * 5765 * 6420 * * 2549 * 5525 6156 3201 3562 6301 * 5996 77 18 6337 * 1585 585 629 1500 6213 1000 1308 E 78 4959 * 3227 1263 * 6156 * 6294 3564 4316 5491 5558 3551 4618 5209 * 4226 4927 * * 78 0 * * * * * 0 6169 0 1000 E 79 5132 * 4680 1433 4531 6532 5004 5645 4521 4889 4703 6540 * 3347 4972 6074 4484 2991 * 6065 79 0 * * * * * 0 5994 0 1000 L 80 * * * * 1821 * 6700 * * 731 6210 * 6022 * * * 6651 5239 * 4659 80 0 * * * * * 0 5987 0 1000 N 81 4472 * 1512 6432 * 4613 2892 * 4994 4965 4363 2629 * * 6439 3044 6528 * * * 81 0 * * * * * 0 5897 0 1000 K 82 5993 6416 3206 6487 1405 6031 5755 7125 4345 6110 4689 5584 6624 2889 5749 3871 4071 7290 * 6255 82 0 * * * * * 0 5887 0 1000 L 83 * * * * 5223 * * 5791 * 272 3858 * * * * * * 4102 * * 83 32 5501 * 1585 585 * 0 5885 1000 1000 L 84 5568 6293 * * 1922 5409 * 2288 * 1881 5814 * * * 4808 4765 * 3662 * 4911 84 76 * 4283 * * * 0 5786 0 1000 G 85 3949 * 2659 4393 * 3116 4042 * 1963 * 6067 3287 * 3936 4394 4463 5558 * * * 85 54 6012 5571 0 * 732 1329 5756 1000 1980 R 86 4979 * 2672 * 4940 2372 3988 3961 3862 5565 5538 3264 5660 4949 3917 4710 4052 5260 * * 86 52 * 4822 * * 1240 794 5611 0 1757 V 87 4057 * * * * 3803 5409 3076 * 4160 * * * * * * 3446 865 5080 * 87 0 * * * * 828 1195 5673 0 2076 T 88 4153 4412 * * * * 4522 2867 * 4992 * * 2276 * * * 1252 4092 * * 88 50 5503 6416 2322 322 * 0 5568 1000 1366 I 89 * 5667 4910 * 5371 4864 * 772 4036 3580 * * * * 4815 5649 * 3279 * * 89 0 * * * * 508 1753 5503 0 1538 A 90 1986 5482 * 4810 * * 4006 * 4263 * * * 2816 5131 5275 1752 3610 * * * 90 0 * * * * * 0 5475 0 1000 Q 91 5202 * * 3099 * 2764 4042 * * * * 4154 5695 1673 4073 2554 * * * 5085 91 66 4492 * 1000 1000 * 0 5475 1000 1000 G 92 5715 * * * * 269 * * * * * * 4890 4648 6540 4386 * 5707 * * 92 48 * 4930 * * * 0 4809 0 1000 G 93 3982 * 5188 * * 439 * * * * * * * 4096 4562 4282 5671 * * * 93 40 5178 * 2585 263 * 0 4668 1000 1327 V 94 3560 * * * * 5104 * * * * 4332 4215 * * 4815 * 3407 615 * * 94 0 * * * * 1310 745 4607 0 1327 L 95 * * * * 5625 * * 2172 3561 1684 4669 * 5335 3133 * 4551 5373 3094 * * 95 0 * * * * * 0 4595 0 1000 P 96 * * * * * * * * 5335 * * * 223 * * 3076 * * * * 96 44 5069 * 0 * * 0 4595 1000 1000 N 97 * 5366 * 3712 4071 * 2372 4851 3202 * * 2486 5114 * 3188 3918 5190 * * 3430 97 0 * * * * * 0 4104 0 1000 I 98 * * * * * * * 477 * 3338 * * 5027 * * 4011 5028 4075 * * 98 0 * * * * * 0 4022 0 1000 Q 99 3670 * * * * * 1017 * * 3774 * 3257 * 2225 4801 * * * * * 99 0 * * * * 0 * 3934 0 1000 S 100 3529 4399 * 4137 * * * * 2134 * * * 1278 4793 3825 4002 * * * * 100 0 * * * * * * 3816 0 0 V 101 2393 * * 2549 * * * 3968 4798 * * * 4669 5291 * 1735 * 2527 * * 101 0 * * * * * * 3556 0 0 L 102 * * * * * * * * * 73 4349 * * * * * * * * * 102 0 * * * * * * 3246 0 0 L 103 * * 3976 * 3998 * * * * 195 * * * * * * * * * * 103 100 3896 * 1000 1000 * * 3133 1000 0 P 104 2393 * * * 4226 4369 * * 2959 * * * 1132 * 3699 4443 * * * * 104 0 * * * * * * 2987 0 0 K 105 * * * * * * * * 659 3448 * * * * 1861 * * * * * 105 0 * * * * * * 2927 0 0 K 106 * * * 3611 * * * * 675 * * * * 3628 2246 * * * * * 106 0 * * * * * * 2829 0 0 T 107 * * * * * * * * * * * * * * * 2020 408 * * * 107 0 * * 0 * * * 1692 0 0 //