HHsearch 1.5 NAME d1krna_ FAM FILE d1krna_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1krna_.a3m DATE Mon Mar 8 21:50:10 2010 LENG 79 match states, 79 columns in multiple alignment FILT 108 out of 515 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.4 EVD 0.4869 1.6195 SEQ >ss_dssp CEECTTSTTCCCCCCBBTTSCBBCCTTCCSSCCCSCCTTTCTTSCCCTTCCBCTTCCSSCEEEBSSTTCCEEEBSCEEC >sa_dssp EDBEEDADEBDCECCDAEEECEABDAECCEDBEBECBDEECEEBCBDEBCABBBDDDEBBBABADDEECDDCCBECEEE >ss_pred CCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEECCCCCC >ss_conf 9634786655266566688864014787674101244455433456626376887786745884599853152588889 >Consensus eCyxgxGxxYrGxxxxTxsGxxClxWxxxxxxxxxxxxxxxxxxxlxxNyCRNPxxxxxPWCYxxxxxxxxexCxIpxC >d1krna_ DCYHGDGQSYRGTSSTTTTGKKCQSWSSMTPHRHQKTPENYPNAGLTMNYCRNPDADKGPWCFTTDPSVRWEYCNLKKC >UniRef50_UPI000186EC47(87-177:1010) plasminogen, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186EC47 E=1e-07 s/c=0.63 id=31% cov=101% ECrISGTGIEYSGLIDNSASGKKCTEWKSKRklknQNEEIFLKNNlFPDESIKtaGKRCRNPNGDvGGPWCYVENDEnelQEKEFCDIPFC >UniRef50_C3YFM6(281-373:524) Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3YFM6_BRAFL E=3e-10 s/c=0.71 id=30% cov=101% DCYYGNGENYRGVGTLPEgSGKTCLNWTNVLEPLFGQFKSHLDWVDKRENYCRNLGLgffYQEPFCFVRTVFDGEEYplptpcglkpCDVPGC >UniRef50_B4DXF6(35-119:423) cDNA FLJ58337, highly similar to Kremen protein 2 n=2 Tax=Catarrhini RepID=B4DXF6_HUMAN E=6e-19 s/c=1.12 id=31% cov=101% ECFQVNGADYRGHQNRTgprGAGRPCLFWDQTQQHSYSSASDPHgRWGLGAHNFCRNPDGDVQPWCYVaeTEEGIYWRYCDIPSC >UniRef50_UPI0001926CD9(155-254:534) PREDICTED: similar to predicted protein n=1 Tax=Hydra magnipapillata RepID=UPI0001926CD9 E=7e-10 s/c=0.65 id=24% cov=99% NCMNEKGLTYRGTTNHTQSGLSCLPWNVDLIVKKIYNQivkveedmlTLFRFPRLDLNALNNLKGEaignhnycrnnnngNAPSCYNSNGIL--EVCNIP PC >UniRef50_UPI000186EC47(448-528:1010) plasminogen, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186EC47 E=8e-11 s/c=0.84 id=30% cov=101% DCkVAGTGNDYLGKLNITRSKRHCMPWTQVKNNEVNVSNFPDPSMEDATNYCRNPTKSiTGCWCYTNDSNVPTDSCLIRDC >UniRef50_B6VC06(110-174:858) Putative uncharacterized protein n=1 Tax=Caenorhabditis sp. PS1010 RepID=B6VC06_9PELO E=2e-05 s/c=0.78 id=27% cov=84% -----------GVTNVTSNGQKCLKWSDPTVLFERENSMEI-DIFESHNFCRFVGNSTSPMCFIK--PNQLEKCELPNC >UniRef50_C3XWL6(171-249:805) Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3XWL6_BRAFL E=1e-10 s/c=0.86 id=31% cov=94% ----DKGVSYLGTVDVADNSAKCLPWLAIPDLGNITDMYPLPgYVGMQDNYCRNPDGRARPWCYTSAAVT--QECGVPTC >UniRef50_C3Z668(198-284:417) Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3Z668_BRAFL E=2e-07 s/c=0.65 id=32% cov=100% -CYVDGTTSYRGQVNVTGTGQQCLDWADEMVQRSLGYMglseAQIAAAGLDGNYCRDPTGSGTLECFVAPGGGLFgivlqEACRIDEC >UniRef50_Q4UIN4(275-332:2798) Cysteine repeat modular protein 2 homologue, putative n=2 Tax=Aconoidasida RepID=Q4UIN4_THEAN E=0.0002 s/c=0.82 id=28% cov=68% ---------YEGCQNMTNDNSVCLNWDEFLRKSHSLYDKRFVFPD---NYCREVHGKKGIWCLTD-------------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * D 1 * * 1475 1101 * * * * * * * 2521 * * * * * * * * 1 0 * * * * * * 5618 0 0 C 2 * 0 * * * * * * * * * * * * * * * * * * 2 102 3867 * 0 * * * 6156 2379 0 Y 3 6925 * * 6677 2748 * * 4061 * 5564 4127 * * 6298 4652 6138 * 2860 * 1028 3 28 5690 * 637 1486 * * 6194 1486 0 H 4 4201 * 3830 4560 5141 6222 3952 6553 3900 4305 5304 3900 4953 5164 6529 3095 2881 3097 5356 4610 4 58 4667 * 331 2286 * * 6195 2328 0 G 5 5527 6849 2721 3717 * 1053 5697 6464 6699 * * 4080 4442 6751 4739 4290 * 5896 * * 5 27 5763 * 590 1575 * * 6221 1480 0 D 6 5207 * 2851 5173 6411 5336 * 5800 3048 5645 * 2096 5602 * 3335 3877 2672 6068 * 5810 6 44 6503 5702 0 * * * 6258 1000 0 G 7 4287 * * 6115 * 237 * * 6768 * 6451 * 4763 * * 6422 5899 * * * 7 11 7056 * 1000 1000 0 * 6400 1000 1126 Q 8 2948 * 4459 3075 * 5905 4857 5276 4418 3611 6649 4741 * 3017 4301 3209 3062 4287 * * 8 0 * * * * * * 6473 0 0 S 9 4896 * 2222 2630 4821 5583 5297 * 5824 4686 * 2684 * 5192 6895 2844 3773 6472 6654 5185 9 13 6843 * 1000 1000 * * 6429 1000 0 Y 10 * * * * 5690 * 5916 * * * * * * * * * * * * 53 10 0 * * * * * * 6480 0 0 R 11 4985 * 5942 4713 * 5761 6445 5902 6369 4656 4598 5537 * 4853 691 4493 6769 5999 * 5081 11 0 * * * * * * 6480 0 0 G 12 * * * * * 37 * * * * * * * * 5297 * * * * * 12 0 * * * * * * 6501 0 0 T 13 5984 4781 4099 6619 5182 * 5415 3823 2918 4280 5302 3861 5326 4748 4841 4490 1865 4386 * 5979 13 0 * * * * * * 6501 0 0 S 14 3095 * * 4499 * 6383 * 3216 3569 2920 5441 6527 5300 2907 4458 5273 4250 2485 7030 * 14 12 * 6894 * * * * 6507 0 0 S 15 3131 * 3408 * 6733 5299 5704 5515 4956 * * 1958 5299 6412 5337 1665 5075 * 6413 7020 15 0 * * * * * 0 6503 0 1000 T 16 6688 * * 4564 4835 * 3958 4564 3226 5695 6491 5861 * 4490 3626 5929 2174 2079 5275 5266 16 40 5202 * 0 * * 0 6503 1408 1000 T 17 3564 * 4848 * * 6698 * 6467 * * * * 3949 * * 2722 636 * * * 17 20 6165 * 1585 585 * 0 6503 1063 1000 T 18 3837 * 5729 3124 5244 4576 7011 4369 3679 4285 6100 6491 * 3916 2656 3218 3155 4259 6803 6488 18 17 6381 * 0 * 0 * 6503 1000 1000 T 19 4395 * 3130 5000 6802 5120 5308 * 4330 * * 3734 6638 5360 4483 1202 3379 * * 6755 19 0 * * * * * * 6507 0 0 G 20 * * 5172 5579 * 215 * * 6200 * * 4811 6470 * 5680 6676 * * * * 20 14 6739 * 2000 415 * * 6507 1000 0 K 21 3431 * 6072 3928 5084 6797 4387 3450 2693 3366 6495 5241 6894 3428 3219 4068 4947 5892 6424 5031 21 37 6470 6180 2807 222 * * 6507 1000 0 K 22 3891 * 5770 3624 * 5849 6194 * 3543 4504 5306 * 2218 4084 3813 3280 2791 4968 6420 6514 22 0 * * * * 0 * 6470 0 1000 C 23 * 37 * * * * * 5300 * * * * * * * * * * * * 23 0 * * * * * * 6507 0 0 Q 24 4871 * 6818 6770 6638 6424 * 5177 4002 1184 3737 6415 * 2663 5689 4048 5238 4811 * 6737 24 0 * * * * * * 6507 0 0 S 25 4113 * 6145 3960 4516 * 7020 * 3966 4469 4796 3061 2057 4832 3592 3468 6682 * 6638 3661 25 0 * * * * * * 6507 0 0 W 26 * * * * * * * * * 5285 * * * * 5696 * * * 66 * 26 69 7318 4618 4322 74 * * 6471 1000 0 S 27 3547 * 2657 6719 6687 6933 4716 5665 5037 5204 6152 1825 4925 6712 6684 2579 3361 * * * 27 59 6570 5086 2585 263 891 1118 6442 1000 2445 S 28 4042 * 2491 4165 6250 6779 5246 5256 6723 6075 4814 5482 * 4228 6976 1451 4192 4206 6305 * 28 118 6748 3850 1000 1000 * 0 6441 1000 2635 M 29 3534 * 2870 3925 6274 5597 5991 4187 4584 4418 7077 5187 2881 3028 6677 3580 3573 4392 * * 29 52 4826 * 1480 641 * 0 6502 2060 3978 T 30 4077 * 4342 3861 5991 4392 3899 6206 4218 3522 3903 5001 3822 4172 4331 3759 3247 4972 6773 4510 30 127 5735 3937 1792 491 2487 283 6502 1571 3978 P 31 3875 * 4657 5377 5615 4839 * 2948 6505 3241 * 4819 2037 5266 6242 3951 4489 3228 * 4957 31 29 * 5647 * * 4072 88 6378 0 4427 H 32 4895 * 4620 5009 6619 4952 3589 4946 4792 2976 5100 3084 4755 3839 3657 4832 6574 3224 * 3514 32 28 6981 6438 5615 30 3223 163 6438 1000 4511 R 33 3319 * 3890 3426 4520 5605 * 5372 2946 4468 5256 4974 5077 4521 3450 2365 5723 * * 4635 33 115 4536 4892 2935 202 1509 625 6441 2447 4533 H 34 * 6637 5494 3156 3263 * 2330 4494 3523 4211 * 3251 5773 * 3754 5424 * 4801 * 3178 34 85 4884 5434 2201 354 1792 491 6452 1975 4278 Q 35 6041 6890 3951 5615 4686 3764 5177 3554 5029 3887 4823 3291 3977 5175 3409 2785 4667 4323 * 6565 35 31 5575 * 2337 318 1269 773 6336 1649 3915 K 36 5183 * 6683 4041 3104 4543 4113 5156 4509 3713 6708 3884 6762 4617 4446 5374 3905 3199 * 2609 36 104 * 3848 * * 2223 348 6429 0 2874 T 37 4451 * 4466 4564 4498 5326 5653 5684 4430 3547 7053 2651 3542 6674 4647 3491 2770 5430 6863 4141 37 68 4996 6106 1031 970 * 0 6362 2013 3848 P 38 4043 * 3223 4838 6590 5893 * 4985 3858 3477 4194 4933 2444 3978 3855 4355 5032 4367 * 4377 38 83 4168 * 2832 218 2081 389 6333 2395 3871 E 39 3962 * 3386 3983 3953 5963 5361 6169 3451 4309 6322 4200 5546 4761 4192 3002 3325 4382 5657 4507 39 13 6826 * 1000 1000 3055 185 6347 1000 3509 N 40 4128 * 4604 3547 4280 6786 5339 5748 3150 3889 5107 3078 3058 6058 3859 3920 4598 4480 6840 5665 40 24 5943 * 966 1035 * 0 6341 1662 3588 Y 41 3761 * 3742 4732 2274 4191 5320 3869 5833 3970 * 5091 4742 6700 5240 4143 5851 5442 6709 2571 41 54 7165 5071 0 * 2115 379 6341 1000 3588 P 42 4287 * 3805 5592 4894 4243 6531 5445 4286 5911 5869 4697 1806 * 3301 3205 4537 4405 * 5232 42 57 4701 * 712 1360 1314 742 6362 2373 3693 N 43 3376 * 2753 3916 4791 4061 5305 * 5921 3922 * 4922 4390 3571 5323 3292 6774 6577 3717 3355 43 68 4736 6917 839 1182 1438 665 6386 2398 2902 A 44 2899 * 4208 3821 6770 2500 6732 4362 3999 3830 6110 6722 4508 5013 4928 3491 6401 3502 6934 4826 44 13 6771 * 0 * * 0 6432 1000 2551 G 45 * 6981 2817 4822 6378 2183 6722 3903 4377 2707 6927 4140 5382 5868 4637 3438 5956 5263 6151 6600 45 153 4704 3999 1116 892 2146 370 6432 2318 2551 L 46 5577 * 4573 4564 * 2423 * 4067 4795 1192 4617 4490 4480 6711 * * 5773 5877 * * 46 38 5280 * 780 1260 892 1117 6342 1889 3472 T 47 3622 * 2505 4610 * 2858 6880 6939 4252 * 6708 2802 4245 5034 4228 3908 5264 3153 * * 47 105 3832 * 2021 408 * 0 6444 3477 2369 M 48 6935 * 4171 2808 6477 3392 1248 * 4660 4005 7119 5760 * 6286 5029 3830 6152 * * 6552 48 53 4796 * 3097 179 938 1065 6444 2518 2369 N 49 5872 * 5811 * * * 6733 * 4803 * * 342 4940 * 4886 3948 * * * * 49 14 6733 * 0 * 833 1189 6482 1000 1557 Y 50 5425 * * * 1947 * 4536 * 4036 * * * * * 4655 * * * * 802 50 14 6692 * 1000 1000 * 0 6454 1000 1000 C 51 * 34 * * * * * * * 5425 * * * * * * * * * * 51 0 * * * * 0 * 6454 0 1000 R 52 6262 * * * * * * * * * * 5436 6848 * 66 * * * * * 52 11 7082 * 1585 585 * * 6471 1000 0 N 53 5408 * 4626 6483 5690 * * * * * 6280 311 * * 6370 3927 * * * 6848 53 22 6028 * 1575 590 * * 6471 1510 0 P 54 4556 * * * 4733 6697 6761 * * 4279 * * 371 * * 6461 6249 4686 * 6280 54 102 3875 * 1777 498 * * 6471 3292 0 D 55 6833 * 1496 4362 6844 2447 5628 6831 5436 5768 * 2958 5719 * 4913 4164 3493 * * * 55 37 5299 * 0 * * * 6471 1936 0 A 56 4299 * 3904 6858 6939 1177 6400 * 4163 4724 * 3228 3934 6868 4036 4519 6019 6616 * 7181 56 269 2638 6709 1130 881 * * 6471 4614 0 D 57 4801 * 1613 2868 6784 7382 6665 * 3859 4593 5505 3549 * 5469 3838 3284 5479 5984 * 5374 57 347 2225 * 1583 586 0 * 6467 4678 1000 K 58 4753 * 4473 2987 6409 3357 6745 6070 3628 4221 5255 4181 4011 4897 4166 2429 4254 4871 * 5729 58 162 3233 * 396 2059 * * 6471 3994 0 G 59 4946 * * 5011 5623 1912 5149 6002 4733 * 5035 * * 3752 1839 4039 3806 5136 5368 * 59 62 4570 * 1152 862 * * 6471 2389 0 P 60 3675 6187 * * * * * 4042 * 4480 * * 346 * * * * 6015 * * 60 0 * * * * * * 6473 0 0 W 61 * * * 6158 4643 4656 * * * * 6449 * * * * 5364 * 5997 282 4946 61 0 * * * * * * 6473 0 0 C 62 * 22 * * * * * * * * * * * * 6051 * * * * * 62 10 7140 * 0 * * * 6473 1000 0 F 63 * * * * 2059 * 6868 5544 * 5062 6336 * * * * * * * * 540 63 101 4057 7013 643 1476 * * 6473 2536 0 T 64 4985 * * * 6486 * * 3758 * 5982 * 5362 6234 * 5360 4919 1467 1458 * 4420 64 244 3438 3982 621 1515 * 0 6469 3346 1000 T 65 3103 * 3194 3605 5451 4722 6796 6448 2667 4865 5422 4302 * 4069 4320 3029 3644 5632 * 6287 65 100 4712 5122 653 1457 449 1902 6517 2155 3390 D 66 5131 * 2131 3391 6399 2944 4873 5978 4055 5125 * 3021 4907 5475 5693 4108 3417 6759 * 6939 66 54 5226 6666 787 1250 767 1277 6423 2118 2730 P 67 5731 * 4143 4545 6212 2552 6200 * 5044 5612 6782 4082 2298 5043 3204 2737 4634 4932 * * 67 42 5753 6613 1666 546 0 * 6450 1611 1864 S 68 3561 * 5024 3890 5554 3495 * 4869 3890 4637 6982 3385 3320 4822 4621 3166 3189 4452 * 5736 68 49 5872 5922 2211 351 * 0 6481 1574 1000 V 69 4107 6830 4872 6772 6570 3686 * 3513 5092 2046 5509 3944 * 5296 4986 3728 3186 3141 * * 69 177 4696 3707 1970 425 1634 561 6468 2426 1960 R 70 4760 * 4509 3552 * 3975 * 3657 3772 4832 * 5641 3882 3285 3588 2703 5803 4738 * 3320 70 70 5552 5245 1804 487 999 1001 6373 1564 3315 W 71 6513 * 6477 4646 3106 * 6510 5653 3900 4195 5232 * 4772 4744 4406 5751 4383 * 1366 3896 71 141 3862 5358 1377 702 0 * 6349 3012 3080 E 72 5028 * 2467 1197 * 4678 5061 * 5106 * 6716 * * 2494 4840 5572 6471 * * * 72 43 5871 6372 1296 754 * 0 6466 1510 1647 Y 73 4277 * 5526 4509 2924 * 3906 6189 6218 4021 * 5813 5039 6639 5268 5209 4801 4234 * 1339 73 45 5024 * 2187 358 457 1882 6452 2001 2135 C 74 * 0 * * * * * * * * * * * * * * * * * * 74 0 * * * * 0 * 6470 0 1000 N 75 3670 6439 1375 4372 * 3729 * * 5029 4420 6034 2622 4948 * 4329 4691 * 6883 * 5955 75 51 4853 * 0 * * * 6471 1827 0 L 76 4738 * * * * * * 1091 * 3241 * 6406 * * * * * 1413 * * 76 11 7052 * 2000 415 * * 6450 1000 0 K 77 4713 * 6041 3890 * * 5996 5229 4017 5997 * 5269 1085 4748 3660 3314 5244 5722 * * 77 29 5635 * 0 * * * 6449 1000 0 K 78 4447 * 3469 4542 5093 6214 4349 4433 2735 4345 6693 6393 3276 3420 4010 3356 5546 4353 * 4829 78 0 * * * * * * 6434 0 0 C 79 * 0 * * * * * * * * * * * * * * * * * * 79 0 * * 0 * * * 6434 0 0 //