HHsearch 1.5 NAME d1kjvb_ FAM FILE d1kjvb_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1kjvb_.a3m DATE Mon Mar 8 22:54:11 2010 LENG 100 match states, 100 columns in multiple alignment FILT 106 out of 640 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 7.7 EVD 0.4365 -0.7507 SEQ >ss_dssp CCCBCCEEEEEESSCCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECSSCEECCCEECTTSCEEEEEEEEECCCSSCCEEEEEECTTCSSCEEEECCTTC >sa_dssp EEDDDBDCEBCCDDECEDEEEBCABACABDACCCECDBCABDDEEECEECEDDEEDEDEDEABDBCACBEBDACEECDBBACADBECCEEDDDCEBDDEE >ss_pred CCCCCCEEEEECCCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCEECCCEECCCCCCCCCEEEEEEEEEEECCCCCEEEEEEEECCCCCCEEEEEECCC >ss_conf 9444767999705876568628999999676377089999618817044241210267763199999999958887889999990777897289750279 >Consensus xxxxxPxVxixxxxxxxxxxxxtLxCxxxxfxPxxixvxWxxxgxxxxxxxxxxxxxxxdgtyxxxSxLxvxxxxxxxxxCxVxHxxLxxpxxxxxxxxx >d1kjvb_ MIQKTPQIQVYSRHPPENGKPNFLNCYVSQFHPPQIEIELLKNGKKIPNIEMSDLSFSKDWSFYILAHTEFTPTETDVYACRVKHVTLKEPKTVTWDRDM >UniRef50_UPI000155C8B9(1062-1170:1744) PREDICTED: similar to IgE immunoglobulin n=1 Tax=Ornithorhynchus anatinus RepID=UPI000155C8B9 E=0.0003 s/c=0.43 id=16% cov=98% ---KAPKVYLFppPTEEMSRGPSLTLVCLIKDFYPASILVQWQEGSAVLETQAAQSQNPSCDHQSRRCSAVSKleIPKsrwmARTRYHCQVFHISRRGIL IRnastHYDPRV >UniRef50_Q9JHJ8(169-254:322) ICOS ligand n=8 Tax=Murinae RepID=ICOSL_MOUSE E=6e-08 s/c=0.68 id=14% cov=85% ---------ISTSDSSNPGQERTYTCMSKNGYPEPnlYWINTTDNSLIDTALQNNTVYLNKLGLYDVISTLRLPWTSRGDVLCCVENVALHQNIT----- -- >UniRef50_P01837(3-104:106) Ig kappa chain C region n=41 Tax=Eutheria RepID=IGKC_MOUSE E=4e-10 s/c=0.65 id=18% cov=96% ----APTVSIFPPSSEQLtSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVlnSWTDQDSKDSTYSMSSTLTLTKdeyERHNSYTCEATHKTSTSPIVK SFNRN- >UniRef50_Q8HWE7(242-321:395) MHC I like leukocyte 1 n=71 Tax=Murinae RepID=Q8HWE7_MOUSE E=2e-06 s/c=0.66 id=18% cov=79% -----PKVIVTFRNYPVGR--ITLTCRAFRLYTRVATLTWLQYRKPVQQKTFGseTILPSGDGTYQAWVSIRVLPGQESQFSCNLKH------------- -- >UniRef50_A8Q1W9(27-115:1056) Putative uncharacterized protein n=1 Tax=Brugia malayi RepID=A8Q1W9_BRUMA E=5e-05 s/c=0.55 id=16% cov=45% -----PVITRQPSAAVQEGELVTIECQTTGGNPSPSFVWVFSNRSMVPE--------------------------------------------------- >UniRef50_C3XQ63(693-774:1056) Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3XQ63_BRAFL E=4e-06 s/c=0.64 id=20% cov=81% ------MVRVGPLENyvISFGRTASLQCVVTGAKPNITVLYWEKDGLRISTSRYSRKYSGGTLDHPNLRISHVTREDAGKYSCLVQHP------------ -- >UniRef50_C3ZMZ2(539-632:656) Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3ZMZ2_BRAFL E=0.0002 s/c=0.50 id=17% cov=90% -VQFPPErVAITTNPPVlKAGEQGTLSCTSSSSNPASVVTWYRDGKVQSGTVEGRVPAENGG--FSTTNALTIPLtstEDGAVFSCRATNELLSESV--- ----- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * 2296 * * 2414 * 2308 1298 * * * * * * * * * 1 0 * * * * * * 3020 0 0 I 2 3697 * * * * * * 1948 * 2667 * * * * * * * 982 * * 2 0 * * * * * * 4742 0 0 Q 3 * * * * * * * * 2924 * * * * 1107 2748 3669 2502 * * * 3 0 * * * * * * 5876 0 0 K 4 3365 * 3746 3448 4053 * * * 2895 * * 4652 * 4790 3346 2606 * 2296 * * 4 0 * * * * * * 6268 0 0 T 5 1816 * 5449 3253 * * * * 3187 5254 * * 2118 * * 2784 5257 4307 * * 5 0 * * * * * * 6757 0 0 P 6 * * * * * * * * * * * * 0 * * * * * * * 6 26 5826 * 0 * * * 7502 1000 0 Q 7 5064 * 6008 2336 * * * * 2250 6314 4456 * * 3463 3554 3283 3004 3557 * * 7 40 5197 * 0 * * * 7557 1176 0 I 8 5908 6030 * * 6297 * * 3234 * 4227 5632 * 4556 * * 5984 4649 562 * * 8 22 6022 * 1000 1000 * * 7573 1000 0 Q 9 3957 * 5080 4278 4786 * 4485 4141 4968 4405 * 5881 5996 4286 3944 1962 2894 6247 5915 3878 9 106 4431 5352 878 1133 * * 7589 2205 0 V 10 4843 * * 5503 6149 4867 * 1649 * 2406 * * 4499 * * * * 1544 * * 10 73 5270 5410 555 1647 0 * 7646 1669 1458 Y 11 * * * 5072 1916 3149 * 4063 * 3190 4625 * * 5445 6271 2409 3188 * * 4361 11 99 4310 5988 671 1427 919 1085 7856 2552 1690 S 12 3876 * * 5497 4754 5371 6109 * 6309 3607 * 6500 1432 4396 4363 3223 3004 5965 * 6186 12 0 * * * * 0 * 7919 0 1715 R 13 3680 5292 6493 3326 * * 4333 * 3769 4559 * 4410 2459 4684 2922 2880 4483 4645 * * 13 81 4535 6417 1450 658 * * 7991 2213 0 H 14 4612 * 4575 2585 * 6136 3538 * 3859 4963 * 3753 3331 5475 4605 2400 3761 4356 * * 14 48 4929 * 705 1371 * 0 7981 2183 1000 P 15 3982 5578 4418 3188 * 5299 6239 3795 6670 5256 * 5248 2238 3633 3825 3099 4787 4400 6812 6153 15 129 3544 * 792 1243 * 0 8062 4108 1000 P 16 2773 * 5217 4830 6154 5981 5940 4000 5885 4263 4758 4559 2958 * 6397 4360 4121 1870 * 6128 16 78 4252 * 677 1416 0 * 8075 2871 1000 E 17 5340 * 3856 2360 5386 5164 * 6228 4027 4269 * 5995 4502 4119 5178 2585 4557 2894 6578 4879 17 92 4015 * 1298 753 * * 8131 2853 0 N 18 4430 6638 5348 3054 6269 4012 4168 3548 4150 2759 * 4432 3261 5575 4940 3626 4899 4786 6593 6239 18 137 4290 4671 799 1233 * * 8162 2663 0 G 19 4427 * 5381 3593 * 1407 4982 * 4807 6215 * 2496 * 6750 3784 3360 5657 6344 * * 19 38 * 5258 * * 567 1622 8031 0 2213 K 20 5270 * 3121 2750 * 4719 4471 * 3542 * * 3640 4838 2191 3948 5326 4020 4160 * * 20 18 * 6334 * * 1575 590 8025 0 2312 P 21 4787 * 4438 2504 6479 5574 5358 4599 3183 * 6103 5200 2954 4241 6195 2896 3051 4606 * * 21 0 * * * * 0 * 8070 0 2368 N 22 2423 * 6690 5525 * 4186 6263 5360 * 3841 * 3258 4784 4297 4982 4580 4558 1802 * 5281 22 80 4491 6753 535 1691 * * 8116 2732 0 F 23 6207 * * 4332 4974 * * 5027 4505 5217 5632 5251 5565 4898 6216 3495 1069 3015 * * 23 58 6700 5069 1000 1000 0 * 8143 1000 1000 L 24 * * * * 3289 * * 3552 * 543 5744 * * * * * * 4385 * 4064 24 18 6303 * 1585 585 0 * 8084 1000 2272 N 25 3950 * * 5622 * 4340 6676 3861 * 3668 5447 4428 6859 4073 4096 3214 1996 2964 * 5270 25 31 5568 * 1900 450 * * 8093 1748 0 C 26 4760 95 * * * * * * * * * * * * * * * 6198 * 6265 26 0 * * * * * * 8015 0 0 Y 27 6950 * 5716 4592 4792 * 2781 4817 5467 2304 4836 4768 * 3876 3537 3526 3805 3699 6668 5791 27 0 * * * * * * 8015 0 0 V 28 1536 6625 * * * * * 2299 * 4404 * * * * * 2993 5529 2015 * * 28 0 * * * * * * 8015 0 0 S 29 4222 * 4212 3714 6617 5393 5755 5176 4177 5355 5905 5818 6993 4303 4023 1972 2694 4814 5402 4902 29 14 * 6687 * * * * 7953 0 0 Q 30 * * 3488 5143 * 1226 4610 * 3692 * * 2723 6384 4776 4041 4190 6440 6662 * * 30 13 * 6752 * * * 0 7949 0 1000 F 31 4245 * 5465 * 886 3346 * 5835 * 4532 * * * * * 4495 6362 6029 4991 3044 31 58 6375 5190 2000 415 0 * 7949 1000 1673 H 32 4153 * * * 2103 * 3886 * 3717 5168 6204 4625 5940 6148 6406 3653 * 6428 * 1505 32 35 5397 * 650 1462 * 0 7962 1637 2197 P 33 * * * 6037 * * * * * * * * 219 5341 6003 4326 5340 6500 * * 33 30 6281 7062 0 * 0 * 7962 1000 2197 P 34 2768 * 3355 3032 * 4619 * 6712 2791 4470 6595 4112 2901 3558 4437 4555 6888 * * 6759 34 42 * 5114 * * * 0 7984 0 1000 Q 35 3667 6325 2792 3831 * 3758 4906 4052 5812 6476 * 3496 2793 5701 4881 3311 5467 3505 * * 35 143 6075 3651 1000 1000 0 * 7956 1000 2755 I 36 3485 * * 4887 6363 * * 1817 6260 2433 5497 6169 4865 * * * 3755 2164 * 6043 36 10 * 7208 * * 0 * 7903 0 3847 E 37 4257 * 5281 3016 * * 4783 5740 3932 5498 5391 3181 * 3640 4043 3000 2844 3768 4921 6636 37 0 * * * * 0 * 7999 0 1000 I 38 6675 * * * 3490 * * 2179 * 2332 5897 * * * * * 6376 1221 * 5395 38 14 6714 * 0 * * * 7991 1000 0 E 39 * * 5914 4734 4328 5536 * 6894 3624 5083 5823 5316 * 3631 3794 2581 1748 6716 3958 5564 39 0 * * * * * * 7991 0 0 L 40 * * * * 5021 * * 4987 6714 4831 * * * 6436 * * 6123 * 226 6376 40 51 5993 5712 484 1811 * * 7991 1660 0 L 41 * * 4792 4547 3032 * 6527 4515 3375 1988 4661 5798 * 4303 4033 4692 3945 6987 5823 3360 41 12 6931 * 2000 415 944 1058 7974 1000 1743 K 42 5514 4868 4785 3701 * 5544 4878 5845 2076 3964 6139 4211 * 4005 2312 4760 6160 3760 * * 42 64 4520 * 2522 276 * 0 7984 3034 1000 N 43 * * 2213 3628 * 2838 * 5323 4142 * * 1519 * 5544 5405 4553 * 6328 6610 5460 43 44 5616 6674 2920 204 * 0 7984 1687 1000 G 44 6419 6701 4163 4299 6167 1050 * * 4202 6926 * 3040 * 6849 5599 2890 5207 * * * 44 32 5506 * 1788 493 1000 1000 7979 1710 1613 K 45 4187 * 4205 3271 * 3937 5232 5610 3091 4020 5384 3853 * 2788 4312 5294 4054 3035 * * 45 0 * * * * * 0 8084 0 1000 K 46 5813 6459 4989 2269 * 4911 5952 4056 3465 4444 5843 4148 2552 5291 4404 4080 4871 3728 * * 46 43 5586 6859 2129 374 0 * 8084 1725 1000 I 47 5305 * 5351 6251 5557 6148 6478 2667 5417 1733 5805 * 6657 5053 3889 4359 4434 2408 * * 47 46 4990 * 888 1122 0 * 8087 2199 1000 P 48 5771 * 3490 3553 * 6349 4465 5747 4073 5580 * 5188 2568 3409 3913 2918 2930 6660 * 5571 48 137 3608 6903 1175 844 * * 8089 3796 0 N 49 3923 * 3643 4128 * 2281 5010 6655 4305 4609 * 3711 4254 4781 5353 2904 2993 * 6705 * 49 26 5824 * 532 1697 0 * 8088 1644 1000 I 50 3433 6468 4107 4244 * 3420 5619 3890 4870 4425 5492 4937 3883 4826 5025 3199 4531 2515 7018 * 50 43 5838 6362 569 1617 * * 8089 1665 0 E 51 3669 * 6651 3052 5727 6650 5944 4001 5629 4661 5801 4916 4399 3595 4335 2529 3124 3534 * 5742 51 43 5700 6651 2548 271 0 * 8061 1827 1000 M 52 5476 * 4618 4878 4053 5082 5739 4283 3923 4040 5232 4138 4593 3961 4483 3393 2454 6183 6303 3674 52 41 5647 6998 573 1610 0 * 8087 1668 1000 S 53 5370 * * * 4799 3355 5047 5883 5646 4142 6384 3606 3744 4228 5415 2735 2105 3899 5427 * 53 57 5427 6013 1351 718 * 0 8088 1714 1000 D 54 4868 * 3551 3345 5659 3960 * 5386 4420 5122 * 5073 3948 2833 4603 2863 2988 4372 * 6522 54 25 5880 * 2000 415 567 1622 8094 1000 2219 L 55 5560 * 5917 4880 4696 * 4190 3429 5560 3629 * 5094 2271 4356 6312 3663 3493 2763 * 5213 55 54 5052 7304 443 1920 0 * 8088 2382 1000 S 56 4372 * 5568 5003 6879 5863 6269 4382 4343 2838 4684 4585 4823 3304 2954 4021 3289 4236 6739 4287 56 12 6910 * 1000 1000 0 * 8100 1000 1000 F 57 4233 6957 4789 3339 5625 * 6308 5081 3431 3827 5039 * 2205 3455 3740 4063 4748 5019 * 4759 57 44 5474 7088 1880 457 * * 8093 2142 0 S 58 4464 * 3383 4386 * 3687 4002 * 4475 5301 4992 2282 5300 3934 4489 3109 3153 * * * 58 14 6744 * 0 * * 0 8092 1000 1000 K 59 3214 6189 3681 3850 5474 2319 5955 * 3706 5385 * 4212 3283 4351 5936 3345 4504 6949 * 5712 59 68 5730 5184 2070 393 0 * 8092 1746 1000 D 60 5613 * 1034 4808 * 3461 * * 4455 4875 * 3169 4767 4981 * 3553 5615 * * * 60 45 * 5030 * * * 0 8065 0 2152 W 61 * * 4489 4403 * 1103 5487 * 4760 4862 6577 3588 * 5997 4703 3133 5304 6054 4762 6622 61 15 * 6584 * * 993 1007 8043 0 3586 S 62 6763 * 4935 * 5873 4624 6089 * 5365 2859 5778 6850 6052 6066 3736 2884 1193 5734 * * 62 38 5747 7082 1803 487 905 1102 8042 1795 2639 F 63 6668 6577 * 4701 1344 6002 5095 5249 * 5551 * * 6613 * * 5346 * 6283 6787 1328 63 15 6581 * 2000 415 506 1758 8075 1000 2236 Y 64 6151 4916 4192 * 4563 6690 5166 5561 6356 * 4509 3615 5564 3414 3492 1851 3037 6643 * 4431 64 30 6248 7132 1585 585 * 0 8073 1000 1000 I 65 2662 5472 * 6622 5784 6378 6607 4228 3973 3327 4065 5562 6787 4849 4256 4515 3496 2089 6983 * 65 0 * * * * * 0 8074 0 1586 L 66 5795 6122 6444 4915 3067 6304 6436 3760 * 3732 4876 7097 * 4995 4259 2276 2218 5114 4964 5440 66 31 6499 6631 0 * * 0 8074 1000 1586 A 67 3391 6293 5674 6301 * 6224 4975 6333 7000 5985 * 4791 * 6852 5554 751 4426 3799 * * 67 14 6732 * 1585 585 * 0 8062 1000 2188 H 68 3967 * 5026 5283 5124 * 4191 3957 * 3930 6783 6523 * 4202 3618 2829 2306 5093 4078 3660 68 30 6440 6822 0 * 1376 702 8062 1000 2188 T 69 6580 5900 * * 6920 6792 6667 3345 * 692 6624 * * 5760 5663 6412 6709 2743 * 6752 69 0 * * * * 501 1769 8078 0 2084 E 70 4876 * 5035 3836 * * 4724 6380 4145 3984 5813 4361 4369 3962 2619 4146 2137 4314 * 5652 70 64 4882 6717 1065 938 0 * 8073 2262 1000 F 71 * * * * 3210 6407 6268 2486 6177 2057 6471 * 6874 * 5967 4946 4578 1771 * 4999 71 84 4736 5727 1140 873 * 0 8087 2656 1000 T 72 6504 * 4993 5816 6249 6737 * 3987 4070 5154 * 4070 2688 4191 5959 3061 1896 3608 6582 * 72 95 3976 * 1396 690 1530 613 8068 3446 2257 P 73 2516 6294 * 4844 * 6132 5702 * 4225 3068 * 7189 1819 6585 3269 4221 4360 5477 4565 * 73 202 2939 * 1887 455 0 * 8074 4802 1686 T 74 3764 * 4633 2165 * 3468 * 6657 4087 * 4420 3719 6677 3801 4687 2932 3539 4849 6762 * 74 105 3827 * 1499 630 * * 8093 3825 0 E 75 3831 6314 2295 2561 * * 4577 * 4700 4179 * 5928 4666 3315 3844 3131 4744 6884 6154 6881 75 135 3706 6311 1107 900 * * 8093 3861 0 T 76 3820 7198 3765 2978 * 1913 5266 * 4073 4912 6468 3746 7090 5743 3830 3874 4589 * 4450 * 76 54 4767 * 1304 749 * 0 8066 2902 1000 D 77 3157 * 2119 3571 * 2752 5787 5710 4710 * 3780 3740 * 4663 5603 3668 4619 5463 * * 77 168 3304 6892 1524 616 0 * 8066 4393 1000 V 78 4408 * 5208 2942 * 5312 5840 4235 3382 4960 6138 3922 * 4252 3266 3864 2830 2988 * * 78 121 3636 * 1304 749 0 * 8079 4172 1000 Y 79 * 6040 * * 1928 5896 5068 3450 * 3809 6740 * 6624 * 6973 * * 3386 * 1361 79 12 6973 * 1585 585 * * 8084 1000 0 A 80 4659 * 5023 3726 * 6706 5313 3404 3988 6141 * * * 4692 4291 2397 1724 4421 * 5740 80 11 7024 * 1585 585 * * 8084 1000 0 C 81 * 74 * * * * * 5819 * 6040 * * * * * * 5896 * * * 81 0 * * * * * * 8084 0 0 R 82 * 6122 * 3098 * * 5379 4751 4441 3923 4765 5115 * 3198 1853 4749 4400 2758 6385 * 82 0 * * * * * * 8063 0 0 V 83 2555 * * * 5803 6001 * 3740 * 5539 * * * * * 6678 6795 574 * 6694 83 0 * * * * * * 8111 0 0 K 84 4704 * 5330 2631 6120 6651 5482 5611 3175 6736 6735 4207 * 2627 3620 3262 2888 6194 5140 * 84 38 5269 * 1502 628 * * 8045 1761 0 H 85 6401 * * * 5735 * 425 7350 * 5750 * 3407 * 4975 * 5963 * 5492 * 4812 85 44 6151 5941 1000 1000 * * 8045 1000 0 V 86 4965 5754 4919 2415 * 4927 * 5075 3063 6577 * 6319 2393 4172 4536 3782 4810 4163 4599 5090 86 19 6266 * 2322 322 * 0 7904 1000 1000 T 87 1896 * 4692 * * 2430 6309 5867 * 5526 6036 * * 5286 * 1816 3123 5960 * * 87 0 * * * * * 0 7873 0 1000 L 88 4217 * * * 5001 * * * * 583 * * * 4240 5680 4080 4721 3975 * 6134 88 48 4947 * 1151 864 * 0 7681 2163 1000 K 89 3518 * 3822 4074 * 4033 4303 * 3653 5518 * 5259 2720 3548 4961 2895 2977 6316 * * 89 0 * * * * 0 * 7681 0 1000 E 90 4061 * 6246 1649 6247 5589 6044 5744 4275 6058 * 6270 5766 2584 4691 3188 3464 4776 * * 90 0 * * * * * * 7612 0 0 P 91 6111 * 4070 5093 * * 5726 4572 4485 6390 * 4437 768 * * 3357 5979 5822 * 6105 91 0 * * * * * * 7429 0 0 K 92 * * 5272 4779 * * * 1916 3639 1760 5081 * 6081 4093 * 5587 4886 2841 * * 92 44 * 5071 * * * * 7377 0 0 T 93 5712 * 4689 3231 * * * 2685 4639 3789 * 5511 * 4510 2702 2576 2794 4785 * * 93 0 * * * * * 0 7172 0 1120 V 94 * * * 5532 5178 * * 4391 2517 4426 * * * 5640 1709 * 3054 2086 * * 94 70 4401 * 2000 415 0 * 6913 1000 1120 T 95 * * 3106 3763 * * 2368 5185 4026 * * * * 3995 * 3512 1849 3856 * 5033 95 0 * * * * * * 6448 0 0 W 96 * * * * 2579 * * 4811 * 3824 * * * * 4444 * * * 1023 2410 96 73 4347 * 2322 322 * * 5827 1000 0 D 97 * * 2301 1402 * * * * 2682 * * 4372 * * 4339 * 3116 4327 * * 97 0 * * * * * * 5747 0 0 R 98 * * * * * * * * * 4047 * * 1106 2828 2524 * 3983 3364 * * 98 0 * * * * * * 5488 0 0 D 99 * * 1137 1950 * * 3810 * * * * 3821 * 3983 3622 * * * * * 99 0 * * * * * * 5055 0 0 M 100 * * * * * * * 2533 * * 2520 * * * * * * 615 * * 100 0 * * 0 * * * 3538 0 0 //