HHsearch 1.5 NAME d1kf6c_ FAM FILE d1kf6c_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1kf6c_.a3m DATE Mon Mar 8 23:32:58 2010 LENG 130 match states, 130 columns in multiple alignment FILT 12 out of 16 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.3 EVD 0.3929 -2.3792 SEQ >ss_dssp CCCCCCCCCCCCTTGGGSSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHGGGGCCCBSSS SBCCSHHHHHHHHHHHHHHHHHHHHHHHCC >sa_dssp EEEEEEEEEEEDECDCDEDEEDDDDDECDDBDECDECDDDBEDEBEEBEEECEECDDDBDECCEDEEBDEDCEEBEECDECDCDBEBDDDBEEDEDEDEE EECCCEDCCEDCDDECDEDDEDEEDEEEEE >ss_pred CCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCC CCCCHHHHHHHHHHHHHHHHHHHHHHHHHC >ss_conf 9876773110482022048168999998677899999999999999996407578999999760559999999999999998889999632565755204 425377899898999999999999998519 >Consensus xskRkpYvRxxxxxWWxxxxfYrxYMLRExtxixvaxyxlxLlxGlxxLxxgxxaxxxwlxxlxnPxxixlnLiaLxaxLlHaxTWFxlxPkamxixvxx xxlxxxxivxaxxxxxxvxsvixlxvxlxx >d1kf6c_ TTKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGFVDFLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKD EKMGPEPIIKSLWAVTVVATIVILFVALYW >UniRef50_C7RPL8(2-109:132) Fumarate reductase subunit C n=2 Tax=Betaproteobacteria RepID=C7RPL8_9PROT E=1e-12 s/c=0.69 id=41% cov=82% --KRRPYVRSMDG-WWKKNPFFVEYMIHEATALFVAAYAGILLFGLLRLSQGEAAWNEWLMALKNPWYIGFHLLALVAISYHTYTWFKIMPRTMpPVIVG GQRL-------SAWAIT-------------- >UniRef50_A5U2R1(2-125:126) Fumarate reductase subunit C n=116 Tax=Bacteria RepID=FRDC_MYCTA E=8e-08 s/c=0.47 id=31% cov=95% -----AYRQPVERYWWARRRSYLRFMLREISCIFVAWFVLYLMLVLRAVGAGGNSYQRFLDFSANPVVVVLNVVALSFLLLHAVTWFGSAPRAMVIQVRG RRVPARAVLAGHYAAWLVVSVIVAWMVL-- >UniRef50_A1WX03(3-126:132) Fumarate reductase, 15 kDa hydrophobic protein n=1 Tax=Halorhodospira halophila SL1 RepID=A1WX03_HALHL E=1e-05 s/c=0.41 id=33% cov=95% ----RPHAyRPTMRGWWQRHPAYRRYLLREGSSVLLALYAIWLLIGVLCLAAGEAAYEGWRALHGHPWLFGLHLAALLAAIFHAVTWFRLLPLTLPVL-- -RWRGYRPTDRMLvWGGWVLSAVLSGGVCLY- >UniRef50_C4LAB1(6-132:134) Fumarate reductase subunit C n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LAB1_TOLAT E=1e-34 s/c=1.16 id=41% cov=98% -SKRKPYVRQVKKSWWLRNSFYTGYMLREGTCIFVGAYAVVLLCGLLRLTQGPEAFAGWLTALQSPLAIVFHLLALVACLFHAKTWFSLAPKAVRIFKGE ELLPEKPIIMAQYIGLAAVSVIVLLIAV-- >UniRef50_Q1ZHT4(2-126:129) Putative fumarate reductase n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZHT4_9GAMM E=8e-31 s/c=1.07 id=38% cov=97% -SKRKPYTYQIETNWWLKSRFYTMYMLREGSSVFITFYSLVLTWGLLCLSRSEAAFNSWLDTLQNPLFIALHLIVLIFALYHSITWFALAPKAMALWIKG RRLEDNVIVATHYAAFVVISVLCLLL---- >UniRef50_A5EXV8(2-130:130) Fumarate reductase, subunit C n=2 Tax=Cardiobacteriaceae RepID=A5EXV8_DICNV E=3e-26 s/c=0.92 id=34% cov=97% --NRQPYQRQQSKFWYLSSRFYRWYMLRELTSLTTAFAALNLFWGLAALASSLESWQCWLNAQKSTFMITLNLIAIAGSLLNSKTWFEAMPKAVRIPKGN GFVAAETLVKGSWiafgSVFVILCLIIIMLA--- >UniRef50_Q7MGX5(2-127:127) Fumarate reductase subunit C n=66 Tax=Gammaproteobacteria RepID=FRDC_VIBVY E=3e-30 s/c=1.05 id=41% cov=98% -SNRKPYVREVKRTWWKDHPFYRFYMLREATVLPLILFTLFLTVGLGSLVKGPEAWQTWLNFMANPVVIAINIVALLGSLLHAHTFFSMMPQVMPIRLKG KPVDKKIIVLAQWAAVAFISLIVLIVV--- >UniRef50_B8EKD0(5-125:134) Fumarate reductase, subunit C n=2 Tax=Rhizobiales RepID=B8EKD0_METSB E=7e-20 s/c=0.81 id=31% cov=94% ----RPFHRPRPSRWWAHKP-YRAYTIRELCGVAVAVYGAILLAGVVCLWRGPDAYDAYRRALASPWSLLAHLLLLAAVLWHVVTWFQILPKTMPKLVLR GRLVPQRLLSAVTLSIACACSVALLV---- >UniRef50_Q65RZ9(5-127:129) FrdC protein n=2 Tax=Pasteurellaceae RepID=Q65RZ9_MANSM E=9e-19 s/c=0.77 id=43% cov=95% -SKRNKYVREVTPTWWKSWSFYKFYMLRESSAIPTVWFCLVLLYGVFCLTTANGFVEKFIPFLQNPVVVILNLISLALLLLHAFTLFQMTGEVMSGSLG- --LKSEVIQKALKVLFAIVTVVALVLV--- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * T 1 * * * * * * * * * * * * * * * * 0 * * * 1 0 * * * * * * 1215 0 0 T 2 * * * * * * * * * * * * * * * 433 1947 * * * 2 0 * * * * * * 2449 0 0 K 3 * * * * * * * * 435 * * 1943 * * * * * * * * 3 0 * * * * * * 2777 0 0 R 4 * * * * * * * * * * * * * * 0 * * * * * 4 0 * * * * * * 2777 0 0 K 5 * * * * * * * * 1090 * * 3232 * 3135 1690 * * * * * 5 0 * * * * * * 3293 0 0 P 6 2542 * * * * * * * 3367 * * * 451 * * * * * * * 6 0 * * * * * * 3442 0 0 Y 7 * * * * 3206 * 3295 * * * * * * * * * * * * 341 7 0 * * * * * * 3442 0 0 V 8 3295 * * * * * 3206 * * * * * * 3284 3291 * 3661 983 * * 8 155 3295 * 0 * * * 3442 1000 0 R 9 * * * * * * * * * * * * * 3291 288 * * * * 3661 9 0 * * * * * * 3442 0 0 P 10 * * * 2045 * * * * * * * * 1418 2048 * 3798 3844 * * * 10 0 * * * * * * 3442 0 0 M 11 * * * * * * * 3661 * * 1897 * * 3284 3206 * 3295 1558 * * 11 0 * * * * * * 3442 0 0 T 12 3844 * 3798 2465 * * * * 2282 * 3295 * 3206 * * 3284 2655 * * * 12 0 * * * * * * 3442 0 0 S 13 * * * * * 3798 * * 2133 * * * 2586 * 1814 2554 3661 * * * 13 108 * 3798 * * * * 3442 0 0 T 14 * * 3797 * 3200 3181 * * * * * 2637 * * 3093 3889 1963 * * 3222 14 0 * * * * 0 * 3378 0 1000 W 15 * * * * * * * * * * * * * * * * * * 0 * 15 0 * * * * * * 3442 0 0 W 16 * * * * * * * * * * * * * * * * * * 156 3284 16 0 * * * * * * 3442 0 0 K 17 2248 * * * * * * * 1685 1703 * * * 2544 * * * * * * 17 0 * * * * * * 3442 0 0 K 18 * * 3639 * * * 3206 * 1847 * * * * 3844 1920 2325 * * * * 18 0 * * * * * * 3442 0 0 L 19 * * * * * * 2457 * 3206 2927 * 2342 * * 3291 2460 * * 3367 * 19 0 * * * * * * 3442 0 0 P 20 3940 * * * * 3844 * * * * * * 1237 * 1817 2670 * * * * 20 165 * 3206 * * * * 3442 0 0 F 21 3094 * * * 377 * * * * * * * * * * 3148 * * * * 21 0 * * * * 0 * 3233 0 1000 Y 22 * * * * 3798 * * * * * * * * * * * * * * 108 22 0 * * * * * * 3442 0 0 R 23 * * * * * * * * 3367 3291 * * * * 930 * 2291 3798 * * 23 0 * * * * * * 3442 0 0 F 24 3206 * * 3798 1696 2996 * * * * 3661 * * * 2293 * * * 3284 * 24 0 * * * * * * 3442 0 0 Y 25 * * * * 3291 * * * * * * * * * * * * * * 155 25 0 * * * * * * 3442 0 0 M 26 * * * * * * * * * 3295 341 * * * * * 3206 * * * 26 0 * * * * * * 3442 0 0 L 27 * * * * * * * 2027 * 406 * * * * * * * * * * 27 0 * * * * * * 3442 0 0 R 28 * * * * * * 3798 * * * * * * * 108 * * * * * 28 0 * * * * * * 3442 0 0 E 29 * * * 0 * * * * * * * * * * * * * * * * 29 0 * * * * * * 3442 0 0 G 30 2716 * * * * 1192 * 3291 * 2245 * * * * * 3367 * * * * 30 0 * * * * * * 3442 0 0 T 31 * 3206 * * * * * * * * * * * * * 1396 967 * * * 31 0 * * * * * * 3442 0 0 A 32 2116 2623 * * * 3206 * * * * * * * * * 1257 * 3639 * * 32 0 * * * * * * 3442 0 0 V 33 * * * * * * * 1344 * 1972 * * * * * * * 1510 * * 33 0 * * * * * * 3442 0 0 P 34 3206 * * * 1402 * * * * 3295 * * 1696 * * * 3284 * * * 34 0 * * * * * * 3442 0 0 A 35 2927 * * * * * * 3661 * 2457 * * * * * * 2325 1294 * * 35 0 * * * * * * 3442 0 0 V 36 1038 * * * * 4054 * 3639 * * * * * * * 3940 3661 2130 * * 36 0 * * * * * * 3442 0 0 W 37 2921 * * * 2460 * * 3940 * 2457 * * * * * * * 3206 1597 * 37 0 * * * * * * 3442 0 0 F 38 3284 * * * 1283 * * * * * * * * * * * * * * 1039 38 0 * * * * * * 3442 0 0 S 39 1316 3367 * * * 3206 * * * * * * * * * 2248 3639 3291 * * 39 0 * * * * * * 3442 0 0 I 40 3206 * * * * 3798 * 2610 * 1117 * * * * * * * 2359 * * 40 0 * * * * * * 3442 0 0 E 41 * * * 4015 3639 * * 2472 * 3844 * 3284 * * * * * 1731 3295 3291 41 0 * * * * * * 3442 0 0 L 42 * * * * * * * * * 0 * * * * * * * * * * 42 0 * * * * * * 3442 0 0 I 43 * * * * 3284 * * 2927 * 1187 2579 * * * * * 2650 * * * 43 0 * * * * * * 3442 0 0 F 44 3206 4054 * * 2902 * * 3295 * 3291 * * * * * * * 3639 2018 2586 44 0 * * * * * * 3442 0 0 G 45 * * * * * 155 * * * * * * * * * * * 3291 * * 45 0 * * * * * * 3442 0 0 L 46 * * * * * * * * * 682 * * * * * * * 1408 * * 46 0 * * * * * * 3442 0 0 F 47 3284 * * * 2130 3639 * * * 1403 * * * * 3291 * * 3206 * * 47 0 * * * * * * 3442 0 0 A 48 1572 1373 * * * * * * * * * * * * 2342 3639 * * * * 48 0 * * * * * * 3442 0 0 L 49 * * * * * * * * * 155 * * * * * * * 3291 * * 49 0 * * * * * * 3442 0 0 K 50 2290 * * * * 3291 * * 2927 * * * * * * 2728 2670 2781 3206 * 50 0 * * * * * * 3442 0 0 N 51 2293 * * * * * * * 3639 * * 4015 * 2342 2416 2537 3367 * * * 51 0 * * * * * * 3442 0 0 G 52 3367 * * * * 471 * * * * * * * * * 2460 * * * * 52 0 * * * * * * 3442 0 0 P 53 * * * 1984 * 3291 * * * 3284 * 3367 1395 3940 * * * * * * 53 0 * * * * * * 3442 0 0 E 54 1633 * 3206 1434 * 3367 * * * * * 3291 * * * * * * * * 54 0 * * * * * * 3442 0 0 A 55 670 * * * 3367 3844 * * * * * * * * * 2288 * * * * 55 0 * * * * * * 3442 0 0 W 56 * * * * 2291 * * * * * * * * * * * * 3367 1372 1679 56 0 * * * * * * 3442 0 0 A 57 3034 * 3206 1898 * * * * * * * 2210 * 1811 * * * * * * 57 0 * * * * * * 3442 0 0 G 58 3206 3284 * 3798 * 1479 * * 3367 * * * * * 3291 3661 3639 * * * 58 0 * * * * * * 3442 0 0 F 59 * * * * 1597 * * * * * * * * * * * * * 834 3206 59 0 * * * * * * 3442 0 0 V 60 * * * * * * * 3367 * 833 * * * * 2250 * * 2927 * * 60 0 * * * * * * 3442 0 0 D 61 3295 * 2041 3940 * * * * * * 3798 2451 3367 * 3206 3844 4054 * * * 61 0 * * * * * * 3442 0 0 F 62 1543 * * * 1283 * * * * 3295 * * * * * 3940 3661 * * * 62 0 * * * * * * 3442 0 0 L 63 * * * * * * 3295 * * 706 3639 * * 3284 * 3291 * * * * 63 0 * * * * * * 3442 0 0 Q 64 1782 * * * * 3295 * * 2518 * * * * 1208 * * * * * * 64 0 * * * * * * 3442 0 0 N 65 * * * * * * 3295 * * * * 832 * * * 1572 * * * * 65 0 * * * * * * 3442 0 0 P 66 * * * * * * * * * * * * 156 * * * 3284 * * * 66 0 * * * * * * 3442 0 0 V 67 * * * * 3284 * * 3940 * 2259 * * * * * * * 1551 1826 * 67 0 * * * * * * 3442 0 0 I 68 2996 * * * 3661 * * 4015 * 3295 3284 * * * * 3206 * 1519 * 3798 68 0 * * * * * * 3442 0 0 V 69 * * * * 3295 * * 1123 * 2490 * * * * * * * 1938 * * 69 0 * * * * * * 3442 0 0 I 70 2650 * * * 3844 2525 * 2655 * 2527 * * * * * * 3284 2623 * * 70 0 * * * * * * 3442 0 0 I 71 3206 * * * 2342 * * 2814 * 857 * * * * * * * * * * 71 0 * * * * * * 3442 0 0 N 72 * * * * * * 1039 * * * * 962 * * * * * * * * 72 0 * * * * * * 3442 0 0 L 73 * * * * * * * 2738 * 550 * * * * * * * 2579 * * 73 0 * * * * * * 3442 0 0 I 74 3295 * * * * * * 1302 * 1689 * * * * * * * 2455 * * 74 0 * * * * * * 3442 0 0 T 75 775 * * * * * * * * 3206 * * * * * 3367 2927 3661 * * 75 0 * * * * * * 3442 0 0 L 76 * * * * * * * 3284 * 156 * * * * * * * * * * 76 0 * * * * * * 3442 0 0 A 77 1201 * * * 3844 * * 3661 * 2457 * * * * * 3291 * 2921 * * 77 0 * * * * * * 3442 0 0 A 78 892 * * * 2465 2451 * * * 3367 * * * * * * * * * * 78 0 * * * * * * 3442 0 0 A 79 1679 2996 * * * * * 3798 * 2329 * * * * * 2451 * 3206 * * 79 0 * * * * * * 3442 0 0 L 80 * * * * * * * 3295 * 275 * * * * * 3798 * * * * 80 0 * * * * * * 3442 0 0 L 81 * * * * 2138 * * * * 962 * * * * * * * * 3206 2728 81 0 * * * * * * 3442 0 0 H 82 * * * * * * 156 * * * * 3284 * * * * * * * * 82 0 * * * * * * 3442 0 0 T 83 981 * * * * * * * * * * * * * * 2460 2298 3206 * * 83 0 * * * * * * 3442 0 0 K 84 * * * * 3367 * 3639 3661 1476 * * * * * * * * 1679 * 3798 84 0 * * * * * * 3442 0 0 T 85 * * * * * * * * * * * * * * * * 0 * * * 85 0 * * * * * * 3442 0 0 W 86 * * * * 3639 * * * * 3367 * * * * * * * * 281 * 86 0 * * * * * * 3442 0 0 F 87 * * * * 0 * * * * * * * * * * * * * * * 87 0 * * * * * * 3442 0 0 E 88 2794 * * 2095 * 3291 * * 3798 * * * * 2284 3295 2832 * * * * 88 0 * * * * * * 3442 0 0 L 89 3284 * * * * * * 2472 * 1192 2497 * * * * 3291 * * * * 89 0 * * * * * * 3442 0 0 A 90 1191 * * * * * * * * 2250 1972 * * * * * 3367 * * * 90 0 * * * * * * 3442 0 0 P 91 * * * * * 3367 * * * * * * 147 * * * * * * * 91 0 * * * * * * 3442 0 0 K 92 * * * 3367 * * * * 871 3295 * * * 3639 2523 * * * * * 92 0 * * * * * * 3442 0 0 A 93 887 * * * * * * * * * * * * * * * 1826 2497 * * 93 0 * * * * * * 3442 0 0 A 94 4015 * * * * * * * * 3295 728 * * * * * * 2105 * * 94 108 3798 * 0 * * * 3442 1000 0 N 95 3661 * * * * * * * * * * 2927 1464 * 2133 3367 * 3291 * * 95 0 * * * * * * 3442 0 0 I 96 * * * * * 3367 * 884 3206 3661 * * * * * * * 2525 * * 96 0 * * * * * * 3442 0 0 I 97 * * * * 2996 * * 2298 * 2250 * * 3284 3291 3639 3367 * * 3661 * 97 155 * 3295 * * * * 3442 0 0 V 98 * * * * * * * 3515 2477 2368 * * * * 3799 * * 1097 * * 98 0 * * * * * 0 3272 0 1000 K 99 * * * * * 1197 * * 1619 3017 * * * * 3124 * * * * * 99 158 * 3269 * * * 0 3272 0 1000 D 100 * * 3608 2696 * 1269 * * * * * 3029 * * 2878 3472 * * * * 100 0 * * * * 1000 1000 3127 0 1687 E 101 * * 3815 2191 * 2115 * * 3437 * * * * 3686 1694 * * * * * 101 0 * * * * * 0 3299 0 1000 K 102 * * * * 3152 * * * 2718 2856 * * 3437 * 1336 * * * 3199 * 102 0 * * * * 0 * 3299 0 1000 M 103 * * * * * * * * * 1264 2927 * * * 3295 * * 1514 * * 103 108 * 3798 * * * * 3442 0 0 G 104 3200 * 3531 3535 * 1982 * * 3301 * * * 2020 * * * * 3093 * * 104 0 * * * * * 0 3378 0 1000 P 105 2211 * 3535 2842 * * * * 3531 * * * 1943 * * 3301 * * * 3181 105 0 * * * * * 0 3378 0 1000 E 106 * * * 1501 * * * * 2146 * * 3535 * 3093 2202 * * * * * 106 0 * * * * * 0 3378 0 1000 P 107 3222 * * * * * * 3531 * * * * 1349 * 3093 * 3200 2413 * * 107 0 * * * * * 0 3378 0 1000 I 108 * * * * * * * 1053 * 2146 3746 * * * * * 3181 3222 * * 108 0 * * * * * 0 3378 0 1000 I 109 * * 3181 * * * * 2248 * 2156 * * * 3301 * * * 1500 * * 109 0 * * * * * 0 3378 0 1000 K 110 2370 * * * * * * 3797 1501 3531 3889 * * * 3181 3093 * * * * 110 0 * * * * 0 * 3378 0 1000 S 111 1057 * * * * 2288 * * * * 3295 * * * * 2902 3661 * * * 111 0 * * * * * * 3442 0 0 L 112 3798 * * * * * 2465 * * 1598 * * * 2282 * 3284 * 3206 * * 112 155 3295 * 0 * * * 3442 1000 0 W 113 * * * * * * * * 3367 * * * * * * * 3206 * 1035 1706 113 156 3284 * 2000 415 * * 3442 1000 0 A 114 1339 * * * * 3295 * 4054 * 3206 * * * * * 3284 * 2110 * * 114 0 * * * * * * 3442 0 0 V 115 1614 * * * * 2625 * 3798 * 3367 * * * * * 3206 * 2095 * * 115 0 * * * * * * 3442 0 0 T 116 * * * * 1844 * * 3206 * 2996 * * * * * * 2298 3639 2293 * 116 0 * * * * * * 3442 0 0 V 117 1169 * * * * * * * * 3222 * * * * * * * 1158 * * 117 0 * * * * * * 3378 0 0 V 118 3889 3093 * * 3531 * * 2250 * 3181 * * * * * * * 1292 * * 118 0 * * * * * * 3378 0 0 A 119 1943 * * * * * * 2533 * 3200 * * * * * 3181 * 1523 * * 119 0 * * * * * * 3378 0 0 T 120 3181 2146 * * * * * * * * * * * * * 1018 2557 * * * 120 0 * * * * * * 3378 0 0 I 121 3746 * * * * * * 3869 * 1904 * * * * * 3093 * 1081 * * 121 0 * * * * * * 3378 0 0 V 122 * * * * * * * 1170 * 1897 * * * * * * * 1801 * * 122 0 * * * * * * 3378 0 0 I 123 2193 3535 * * * * * 1990 * * * * * * * 3181 * 1586 * * 123 0 * * * * * * 3378 0 0 L 124 3222 * * * * 3181 * 3200 * 570 * * * * * * * * * * 124 0 * * * * * * 3378 0 0 F 125 3746 * * * 3869 3181 * 2658 * 1884 3200 * * * * * * 3301 3222 * 125 0 * * * * * * 3378 0 0 V 126 * * * * * * * 2842 * 1754 3222 * * * * * * 1130 * * 126 0 * * * * * * 3378 0 0 A 127 1317 2817 * * * * * * * * * * * * * * * 1130 * * 127 0 * * * * * * 3057 0 0 L 128 * * * * * * * * * 331 * * * * * * * 2287 * * 128 0 * * * * * * 2400 0 0 Y 129 * * * * * * * * * * * * * * * * * * * 0 129 0 * * * * * * 1575 0 0 W 130 * * * * * * * * * * * * * * * * * * 0 * 130 0 * * 0 * * * 1000 0 0 //