HHsearch 1.5 NAME d1jjga_ FAM FILE d1jjga_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1jjga_.a3m DATE Mon Mar 8 22:01:33 2010 LENG 102 match states, 102 columns in multiple alignment FILT 5 out of 9 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 1.9 EVD 0.4173 0.0171 SEQ >ss_dssp CCCSSCCCCCCCCCCCCCCCCCCSSCCCCCCSSCEEEEEEEEETTEEEEECTTTSSCEEEECTTCCSSCCCCCHHHHHHTTCEEEEEEEEECSSEEEEEC CC >sa_dssp EEEEEDEEEEEEEEEEEEEEEEEEEDEEEEEDECEDEADBDCEECBBBADCEEEEDCCACBBDEDEEEDEDEDEEDDEECCEECDADBCEBEDEEACACD DE >ss_pred CEEECCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEECCEEEEEEECCCCCEEEEEEEEEHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEEEE CC >ss_conf 9123567898875557326656662023238871477799998897999970877630687653421289899998731552699999994158998700 09 >Consensus xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGxVtkGiVxxkxxxfyVxLxdYxxxexilvdYlnvxxdrxxklkekLVGKtIkVkVIRxDxlYvDvRx xx >d1jjga_ MTVIKPSSRPRPRKNKNIKVNTYRTSAMDLSPGSVHEGIVYFKDGIFKVRLLGYEGHECILLDYLNYRQDTLDRLKERLVGRVIKTRVVRADGLYVDLRR FF >UniRef50_P32224(19-83:86) Uncharacterized protein C8 n=2 Tax=Swinepox virus RepID=VC08_SWPVK E=1e-05 s/c=0.78 id=41% cov=63% ----------------------------------ITQGIIFVRNNIFYSYLTDYAMEACI-LNYINIRADKIEDLKKSLVGKTISVRVIRVDVLkgYIDV ---- >UniRef50_Q08FY0(19-85:89) EIF2a-like PKR inhibitor n=7 Tax=Chordopoxvirinae RepID=Q08FY0_DPV83 E=9e-14 s/c=1.17 id=39% cov=63% ------------------------------------KGIVILKNGELYVKLIDY-GLDGFIVDYWNVNQERFEKIRKKLVGKVIKVKVIRTDKVkgYIDV RK-- >UniRef50_P18378(12-79:88) Protein K3 n=31 Tax=root RepID=VK03_VACCW E=1e-13 s/c=1.14 id=33% cov=60% --------------------------------GDVIKGRVYEKDYALYIYLFDYPHFEAILAESVKMHMDRYVEYRDKLVGKTVKVKVIRVD-------- -- >UniRef50_Q6TUZ8(18-85:88) 12L n=3 Tax=Yatapoxvirus RepID=Q6TUZ8_YMTV E=5e-13 s/c=1.11 id=31% cov=66% --------------------------------GTITKGVVTVEGDSFTVFLPEFGLHA-LIVNYLSVNVKRAKKLSEKLSGKTVTVQVIRTDKLkgYVDV R--- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 0 * * * * * * * * * 1 0 * * * * * * 1000 0 0 T 2 * * * * * * * * * * * * * * * * 0 * * * 2 0 * * * * * * 1000 0 0 V 3 * * * * * * * * * * * * * * * * * 0 * * 3 0 * * * * * * 1000 0 0 I 4 * * * * * * * 0 * * * * * * * * * * * * 4 0 * * * * * * 1000 0 0 K 5 * * * * * * * * 0 * * * * * * * * * * * 5 0 * * * * * * 1000 0 0 P 6 * * * * * * * * * * * * 0 * * * * * * * 6 0 * * * * * * 1000 0 0 S 7 * * * * * * * * * * * * * * * 0 * * * * 7 0 * * * * * * 1000 0 0 S 8 * * * * * * * * * * * * * * * 0 * * * * 8 0 * * * * * * 1000 0 0 R 9 * * * * * * * * * * * * * * 0 * * * * * 9 0 * * * * * * 1000 0 0 P 10 * * * * * * * * * * * * 0 * * * * * * * 10 0 * * * * * * 1000 0 0 R 11 * * * * * * * * * * * * * * 0 * * * * * 11 0 * * * * * * 1000 0 0 P 12 * * * * * * * * * * * * 0 * * * * * * * 12 0 * * * * * * 1000 0 0 R 13 * * * * * * * * * * * * * * 0 * * * * * 13 0 * * * * * * 1000 0 0 K 14 * * * * * * * * 0 * * * * * * * * * * * 14 0 * * * * * * 1000 0 0 N 15 * * * * * * * * * * * 0 * * * * * * * * 15 0 * * * * * * 1000 0 0 K 16 * * * * * * * * 0 * * * * * * * * * * * 16 0 * * * * * * 1000 0 0 N 17 * * * * * * * * * * * 0 * * * * * * * * 17 0 * * * * * * 1000 0 0 I 18 * * * * * * * 0 * * * * * * * * * * * * 18 0 * * * * * * 1000 0 0 K 19 * * * * * * * * 0 * * * * * * * * * * * 19 0 * * * * * * 1000 0 0 V 20 * * * * * * * * * * * * * * * * * 0 * * 20 0 * * * * * * 1000 0 0 N 21 * * * * * * * * * * * 0 * * * * * * * * 21 0 * * * * * * 1000 0 0 T 22 * * * * * * * * * * * * * * * * 0 * * * 22 0 * * * * * * 1000 0 0 Y 23 * * * * * * * * * * * * * * * * * * * 0 23 0 * * * * * * 1000 0 0 R 24 * * * * * * * * * * * * * * 0 * * * * * 24 0 * * * * * * 1000 0 0 T 25 * * * * * * * * * * * * * * * * 0 * * * 25 0 * * * * * * 1000 0 0 S 26 * * * * * * * * * * * * * * * 0 * * * * 26 0 * * * * * * 1000 0 0 A 27 0 * * * * * * * * * * * * * * * * * * * 27 0 * * * * * * 1000 0 0 M 28 * * * * * * * * * * 0 * * * * * * * * * 28 0 * * * * * * 1000 0 0 D 29 * * 0 * * * * * * * * * * * * * * * * * 29 0 * * * * * * 1000 0 0 L 30 * * * * * * * * * 0 * * * * * * * * * * 30 0 * * * * * * 1000 0 0 S 31 * * * * * * * * * * * * * * * 0 * * * * 31 0 * * * * * * 1000 0 0 P 32 * * * * * * * * * * * * 0 * * * * * * * 32 0 * * * * * * 1000 0 0 G 33 * * * * * 0 * * * * * * * * * * * * * * 33 0 * * * * * * 2069 0 0 S 34 * * 1603 * * * * * * * * * * * * 1585 1567 * * * 34 0 * * * * * * 2069 0 0 V 35 * * * * * * * 1021 * * * * * * * * * 979 * * 35 0 * * * * * * 2314 0 0 H 36 * * * * * * 2008 1951 * * * * * * * * 1021 * * * 36 0 * * * * * * 2314 0 0 E 37 * * * 2297 * * * * 726 * * * * 2382 * * * * * * 37 0 * * * * * * 2436 0 0 G 38 * * * * * 0 * * * * * * * * * * * * * * 38 0 * * * * * * 2436 0 0 I 39 * * * * * * * 803 * * * * * * 2247 * * 2210 * * 39 0 * * * * * * 2436 0 0 V 40 * * * * * * * 2382 * * * * * * * * * 307 * * 40 0 * * * * * * 2436 0 0 Y 41 * * * * 2382 * * 2492 * * * * * * * * 2210 * * 1271 41 0 * * * * * * 2436 0 0 F 42 * * * 2247 2297 * * * * 2492 * * * * * * * 1293 * * 42 0 * * * * * * 2436 0 0 K 43 * * * 2210 * * * * 756 * * * * * 2382 * * * * * 43 0 * * * * * * 2436 0 0 D 44 * * 1271 * * 2210 * * * * * 1436 * * * * * * * * 44 0 * * * * * * 2436 0 0 G 45 * * 2210 * * 1391 * * * * * 2382 * * * * * * * 2247 45 0 * * * * * * 2436 0 0 I 46 2247 * * 2492 * * * 1339 * * * * * * * 2210 * * * * 46 0 * * * * * * 2436 0 0 F 47 * * * * 709 * * * * 1364 * * * * * * * * * * 47 0 * * * * * * 2436 0 0 K 48 * * * * * * * * 2297 * * * * * * * 2210 * * 785 48 0 * * * * * * 2436 0 0 V 49 * * * * * * * 2247 * * * * * * * 2382 * 743 * * 49 0 * * * * * * 2436 0 0 R 50 * * * * 2210 * * * 2492 * * * * * 2297 * * * * 1313 50 0 * * * * * * 2436 0 0 L 51 * * * * * * * * * 0 * * * * * * * * * * 51 0 * * * * * * 2436 0 0 L 52 * * * * 2247 * * 2492 * 2297 * * 2210 * * * 2382 * * * 52 0 * * * * * * 2436 0 0 G 53 * * 785 2210 * 2297 * * * * * * * * * * * * * * 53 0 * * * * * * 2436 0 0 Y 54 * * * * 2210 * * * * * * * * * * * * * * 351 54 282 * 2492 * * * * 2436 0 0 E 55 2121 * * 2008 * 1927 * * * * * * 1951 * * * * * * * 55 0 * * * * 0 * 2314 0 1000 G 56 * * * * * 1391 2247 * * 2210 2382 * * * * * * * * * 56 0 * * * * * * 2436 0 0 H 57 * * * 2382 2247 * 1253 * * 2492 * * * * * * * * * * 57 0 * * * * * * 2436 0 0 E 58 1293 * 2492 1271 * * * * * * * * * * * * * * * * 58 351 * 2210 * * * * 2436 0 0 C 59 1933 1004 * * * 2061 * * * * * * * * * * * * * * 59 0 * * * * 0 * 2138 0 1000 I 60 * * * * 2492 * * 722 * 2210 * * * * * * * * * * 60 307 * 2382 * * * * 2436 0 0 L 61 * * * * * * * 1052 * 949 * * * * * * * * * * 61 0 * * * * 0 * 2239 0 1000 L 62 2247 * * * * * * * * 1339 * * * * * * * 1344 * * 62 0 * * * * * * 2436 0 0 D 63 * * 1391 2247 * * * * * * * 1293 * * * * * * * * 63 0 * * * * * * 2436 0 0 Y 64 * * * * * * * * * * * * * * * 2247 * * * 341 64 0 * * * * * * 2436 0 0 L 65 * * * * * * * 2382 * 1253 * * * * * * * 2247 2492 * 65 0 * * * * * * 2436 0 0 N 66 * * * * * * * * 2247 * * 803 * * * 2210 * * * * 66 0 * * * * * * 2436 0 0 Y 67 * * * * * * * 2382 * * 2247 * * * * * * 1344 * 2297 67 0 * * * * * * 2436 0 0 R 68 * * * * * * 2247 * * * * 1344 * * 1339 * * * * * 68 0 * * * * * * 2436 0 0 Q 69 2382 * * * * * * * * * 2247 * * 1391 * * * 2210 * * 69 0 * * * * * * 2436 0 0 D 70 * * 722 2492 * * * * 2210 * * * * * * * * * * * 70 0 * * * * * * 2436 0 0 T 71 * * * * * * * * 2382 * * * * * 726 * 2297 * * * 71 0 * * * * * * 2436 0 0 L 72 2210 * * * 2492 * * 2382 * 2297 * * * * * * * * * 2247 72 0 * * * * * * 2436 0 0 D 73 * * 2297 1436 * * * * 2210 * * * * * * * * 2247 * * 73 0 * * * * * * 2436 0 0 R 74 * * 2382 2247 * * * * 1344 * * * * * 2297 * * * * * 74 0 * * * * * * 2436 0 0 L 75 * * * * * * * 2492 * 709 * * * * * * * * * 2247 75 0 * * * * * * 2436 0 0 K 76 * * * * * * * * 1339 * * * * * 1364 2210 * * * * 76 0 * * * * * * 2436 0 0 E 77 * * 2247 1253 * * * * 1436 * * * * * * * * * * * 77 0 * * * * * * 2436 0 0 R 78 * * * * * * * * 726 * * * * * 2297 2382 * * * * 78 0 * * * * * * 2436 0 0 L 79 * * * * * * * * * 0 * * * * * * * * * * 79 0 * * * * * * 2436 0 0 V 80 * * * * * * * * * * * * * * * 2210 * 351 * * 80 0 * * * * * * 2436 0 0 G 81 * * * * * 0 * * * * * * * * * * * * * * 81 0 * * * * * * 2436 0 0 R 82 * * * * * * * * 328 * * * * * 2297 * * * * * 82 0 * * * * * * 2436 0 0 V 83 * * * * * * * * * * * * * * * * 693 1391 * * 83 0 * * * * * * 2436 0 0 I 84 * * * * * * * 803 * * * * * * * * * 1228 * * 84 0 * * * * * * 2436 0 0 K 85 * * * * * * * * 756 * * * * * * 2382 2210 * * * 85 0 * * * * * * 2436 0 0 T 86 * * * * * * * * * * * * * * * * 2297 328 * * 86 0 * * * * * * 2436 0 0 R 87 * * * * * * * * 1364 * * * * 2210 1339 * * * * * 87 0 * * * * * * 2436 0 0 V 88 * * * * * * * * * * * * * * * * * 0 * * 88 0 * * * * * * 2436 0 0 V 89 * * * * * * * 328 * * * * * * * * * 2297 * * 89 0 * * * * * * 2436 0 0 R 90 * * * * * * * * * * * * * * 0 * * * * * 90 0 * * * * * * 2436 0 0 A 91 2297 * * * * * * * * * * * * * * * 1344 1313 * * 91 0 * * * * * * 2436 0 0 D 92 * * 0 * * * * * * * * * * * * * * * * * 92 0 * * * * * * 2436 0 0 G 93 * * * * * 1947 * * 1008 * * * * * * * * 2039 * * 93 0 * * * * * * 2100 0 0 L 94 * * * * * * * * * 392 * * * * * * * 2072 * * 94 1947 433 * 1000 1000 * * 2100 1828 0 Y 95 * * * * * * * * * * * * * * * * * * * 0 95 0 * * * * * * 2100 0 0 V 96 * * * * * * * 1055 * * * * * * * * * 947 * * 96 0 * * * * * * 2100 0 0 D 97 * * 0 * * * * * * * * * * * * * * * * * 97 0 * * * * * * 2100 0 0 L 98 * * * * * * * * * 1947 * * * * * * * 433 * * 98 0 * * * * * * 2100 0 0 R 99 * * * * * * * * * * * * * * 0 * * * * * 99 0 * * * * * * 1855 0 0 R 100 * * * * * * * * 1023 * * * * * 978 * * * * * 100 0 * * * * * * 1509 0 0 F 101 * * * * 0 * * * * * * * * * * * * * * * 101 0 * * * * * * 1000 0 0 F 102 * * * * 0 * * * * * * * * * * * * * * * 102 0 * * 0 * * * 1000 0 0 //