HHsearch 1.5 NAME d1j8ca_ FAM FILE d1j8ca_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1j8ca_.a3m DATE Mon Mar 8 23:27:58 2010 LENG 103 match states, 103 columns in multiple alignment FILT 110 out of 697 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.9 EVD 0.4211 -0.3075 SEQ >ss_dssp CCCSCCCCCCCSSCCCSCCCCCSSSCCCCCCCEEEEEECSSCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEE EEC >sa_dssp EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEADABACBEEEEDDCDBCCECDAEEBBECACEECEDCDEDABADBEEEDACDECDACEEAAEEDDEBEB DDE >ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEECCCCCCCCCCHHHHCCCCCCEEEE EEC >ss_conf 9866787788888877545545677888883089999728975999977988489999999988489876688840564037765599908899889999 989 >Consensus xxxxxxxsxxxxpxxxxxxxxxxxxxxxxxxxIxixVktxxxxxxixvxxxxtVxxLKxxixxxxgvxxxxqxLixxGkxLxdxxtLxxygIxxgxxixl vvk >d1j8ca_ MAENGESSGPPRPSRGPAAAQGSAAAPAEPKIIKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHL VIK >UniRef50_C7Z1M8(2-113:768) Putative uncharacterized protein n=1 Tax=Nectria haematococca mpVI 77-13-4 RepID=C7Z1M8_NECH7 E=7e-05 s/c=0.43 id=22% cov=80% ------SKPPTARPNDEGPDDASSGSSVDDQTVNLQVVSPSvgvNRPLLfpGIAANTTVKQLKERIRQTLPLRPsdEHQRLIHRGRaIVRESDTL----- ----------- >UniRef50_A0ECD1(6-80:513) Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Oligohymenophorea RepID=A0ECD1_PARTE E=0.0001 s/c=0.63 id=22% cov=66% ----------------------------ERKIIQIEIKyTTEIHKNVPIDLNGTVLKFQETLQELLKVPIEKQKIMIKGSLLKKDQDISKLNLKNG---- ---- >UniRef50_Q5KL85(4-91:101) Putative uncharacterized protein n=1 Tax=Filobasidiella neoformans RepID=Q5KL85_CRYNE E=0.0004 s/c=0.52 id=21% cov=83% -----------RGSNPPEEKPKAEEPAADPNTLNIKItNTNNEEVFFKIKRTTKLNKLKSAYADRVGTDVASIRLLFDGHRILDHQTANDLDLEDG---- ---- >UniRef50_O14562(276-377:533) Ubiquitin domain-containing protein UBFD1 n=40 Tax=Eumetazoa RepID=UBFD1_HUMAN E=5e-11 s/c=0.67 id=18% cov=92% ------GSLQPAPAQPPGDPAAQASVSNGEdagggagrELVDLKIIWNKTKHDVKFPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPED-KTLREIKV TSGAKIMVV-- >UniRef50_C3ZIR1(135-222:232) Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3ZIR1_BRAFL E=6e-06 s/c=0.59 id=21% cov=68% --------------------------------LKLRLSTGKD-LKLNVQTTDSVLHIKKRLNAEEGIESSRQRWYFSGKLLQDKMRIEDAKIPKGFVVQV IV- >UniRef50_B8NZA2(183-281:289) Predicted protein n=1 Tax=Postia placenta Mad-698-R RepID=B8NZA2_POSPM E=9e-15 s/c=0.82 id=22% cov=94% -------STPARQGSARTTLQRLRRPAPSNEEVQIFVKNLNGKtMAIMVSPADTVKSLLEKVEVKTGIPPSQQRLLYGGKQLVPDMILADYNIQKESTLH LVLR >UniRef50_A2EWB0(2-79:84) Ubiquitin family protein n=1 Tax=Trichomonas vaginalis RepID=A2EWB0_TRIVA E=0.0004 s/c=0.59 id=18% cov=48% -------------------------------------------------------EFMKKIANLFCVQPSEIKIRCGTQQLQAGYTVGKYGIQNGSKIEI TVR # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 0 * * * * * * * * * 1 0 * * * * * * 2210 0 0 A 2 2059 * * * * * * * * * * * * * * 1962 990 * * * 2 0 * * * * * * 2743 0 0 E 3 * * 2679 914 * 2655 * * * * * * * 2695 * * * * * * 3 0 * * * * * * 3734 0 0 N 4 * * * * * * 2875 * 1945 * * 2089 * 3143 * 1966 * * * * 4 0 * * * * * * 4413 0 0 G 5 1968 * * * * 2217 * * * 3073 * * * * * * 1285 * * * 5 0 * * * * * * 4413 0 0 E 6 * * * 2065 * 2108 * * 3077 * * * 2910 * * 2875 2825 * * * 6 0 * * * * * * 4413 0 0 S 7 3356 * * 3423 * 1973 * * * 4065 * * * * 3673 1264 * * * * 7 0 * * * * * * 4889 0 0 S 8 * * * * * 3787 * * 3479 * * * * * * 562 2641 * * * 8 0 * * * * * * 5019 0 0 G 9 2247 * 4394 * * 2837 * * * 3721 * * 3575 3659 * 2214 2762 * * * 9 0 * * * * * * 5146 0 0 P 10 4231 * 4778 4197 * 4476 * * 4045 * * * 906 4210 * 4091 3265 * * * 10 0 * * * * * * 5824 0 0 P 11 4546 * 2729 * * * 4272 * 4136 * * * 1245 * * 3764 3381 3234 * * 11 74 4321 * 2322 322 * * 6039 1000 0 R 12 1891 * 4629 4573 * 4402 3587 * * * * * 4574 3223 1585 4841 * * * * 12 0 * * * * * * 6467 0 0 P 13 3969 * * * * 4591 * * * * * * 635 3875 3727 3819 * * * 4790 13 0 * * * * * * 6663 0 0 S 14 4143 * 3833 3350 * 3366 * * * * * * 2946 * 5195 1559 3195 3786 * * 14 51 4850 * 3322 152 * * 6745 1000 0 R 15 3839 5591 5094 4805 * 3121 * * 5112 5003 * 2911 3777 3440 2404 3606 3321 * * * 15 50 4880 * 1000 1000 * * 6848 1000 0 G 16 2603 * 3065 * * 3158 5085 * 4978 4855 4118 3670 3416 3873 * 3613 3355 5036 * * 16 0 * * * * * * 6961 0 0 P 17 4251 * * 3206 * 4995 5577 * 4224 5132 * 5165 1261 3985 3797 4298 5218 5067 * 5867 17 42 5140 * 0 * * * 7066 1000 0 A 18 2085 * * 2783 * 3529 * 5248 5362 * * 4094 4453 4314 4086 3309 3123 4247 * * 18 0 * * * * * * 7139 0 0 A 19 2996 5608 4451 3703 5489 * 5416 3679 4690 4171 5870 5476 4650 3826 4283 2827 2719 5675 * * 19 0 * * * * * * 7159 0 0 A 20 2119 * 5448 3860 * 5402 * 5616 2771 3911 * * 2557 3625 4133 3462 5489 * * * 20 40 * 5187 * * * * 7159 0 0 Q 21 2823 * 4620 2868 * 4176 * * * * * 4446 3246 2901 2672 4450 3846 3872 * * 21 27 5767 * 0 * 0 * 7130 1000 1000 G 22 3513 * 4708 3206 * 1911 * * 3902 5412 * 4382 5671 3339 4563 3289 4177 4536 * * 22 0 * * * * * * 7184 0 0 S 23 3075 * 5443 4528 * 2702 * * 3506 5587 * 4145 4748 3975 * 2471 3440 3705 * 4443 23 63 5516 5604 1000 1000 * * 7197 1000 0 A 24 2661 4529 3553 3334 * 4559 * * 4037 * * 5259 2232 5518 4037 3504 4661 4025 * * 24 59 4641 * 1760 505 * 0 7208 1696 1000 A 25 1760 5673 4719 3238 * 3513 5385 5979 5525 3971 * 5240 4752 5462 5631 3268 4849 3585 * * 25 28 5709 * 0 * 0 * 7220 1000 1000 A 26 2748 * 5573 5302 * * * 5594 4462 * * 4709 2356 4052 3580 2634 3035 3676 * * 26 17 6392 * 1000 1000 * * 7174 1000 0 P 27 2435 * 4689 3629 * * * 4918 3862 5296 * 5905 2185 5394 5842 3438 3409 3265 * * 27 22 * 6038 * * * * 7144 0 0 A 28 2158 5698 4524 3095 * 5691 * * 4571 5593 * 3324 2942 3125 * 3355 4939 5663 * 5694 28 0 * * * * * 0 7135 0 1000 E 29 4335 * 3254 2785 4890 2636 6012 5664 3919 4195 5659 4094 3326 5355 * 4002 3893 5818 * * 29 37 5305 * 1585 585 0 * 7127 1000 1000 P 30 3458 * 3607 2869 * 5012 5515 * * * * 4878 1531 5697 4694 3116 3924 5801 * * 30 96 5851 4401 3000 193 * * 7051 1000 0 K 31 4906 5893 5154 3015 * 4942 5695 4919 2400 5766 6218 4218 3228 3704 4413 4194 3652 3766 * * 31 0 * * * * 1368 707 7115 0 1880 I 32 6003 * * 3434 6101 5699 4663 3487 5264 3884 3594 5915 4292 * * 3472 1470 4874 * * 32 64 4979 6391 3169 170 0 * 7097 1705 1356 I 33 * * * * 5403 * * 859 * 2965 3009 6269 * * * * * 2909 5228 * 33 0 * * * * 0 * 7166 0 1000 K 34 6082 * 4847 3891 * * 6136 5764 2415 * 5844 3432 5128 2548 3221 3495 3036 5834 * 5803 34 20 * 6166 * * * * 7156 0 0 V 35 * * * * 4555 * * 1387 * 2271 * * * * 5706 * * 1519 * * 35 0 * * * * 0 * 7176 0 1000 T 36 6495 * * 5974 4120 * 4146 3874 2689 4261 6372 4002 * 4233 2685 4122 2315 * 6242 5118 36 31 6412 6730 0 * * * 7188 1000 0 V 37 4513 6058 * * 5435 * * 2078 * 2629 * * * * * * * 944 * * 37 102 4426 5524 0 * 0 * 7187 2299 1000 K 38 * * * * * 6207 * 5992 1080 * * 4308 4776 3751 3328 2966 3651 5088 * * 38 57 4683 * 1748 510 866 1148 7171 2271 1587 T 39 6276 * 4465 6890 6281 6437 3542 5525 * 4145 5198 4368 6293 6263 * 2394 1425 * 4544 4721 39 151 3807 5166 622 1514 * 0 7171 3080 1000 P 40 4904 6667 * 7134 * 3518 6077 4329 6096 1776 5469 3895 2563 * 3648 4414 3605 5428 * * 40 53 4791 * 0 * 523 1718 7175 2214 2182 K 41 4259 * 2679 4545 6521 2093 * * 3683 6105 * 2729 5481 5860 5318 3021 4376 6235 * 6517 41 103 4073 6675 1241 793 * 0 7215 2519 1000 E 42 7009 * 2901 2895 6092 2784 * 4396 2974 * * 4050 6338 5242 4289 2728 4218 5889 * 5831 42 34 * 5411 * * 837 1183 7256 0 1618 K 43 * * 6057 3735 * 6174 4795 5230 1920 * * 4947 6294 3346 3426 3411 2169 5958 * * 43 237 2821 6613 107 3807 521 1721 7278 4043 2093 E 44 4613 * 6434 2921 2964 * 2921 3392 4241 3528 5119 * 6182 * 6084 4314 4900 3984 * 3104 44 97 3941 * 617 1523 * 0 7286 3319 1549 E 45 3314 5423 2697 2561 6077 6694 4963 * 3967 5261 * 4301 4268 6467 5237 3482 3034 4211 * * 45 64 4529 * 1771 500 * 0 7433 2277 1549 F 46 * 5904 * * 3241 * * 2445 * 1758 4651 * 6291 * * * * 1808 * 4056 46 46 4998 * 788 1249 981 1019 7389 2262 1549 A 47 4351 * 3742 2546 6583 5246 3793 * 3749 * 4979 3761 4648 4443 3755 3213 3123 5554 * 6334 47 28 6767 6626 0 * * 0 7452 1000 1000 V 48 6461 4796 * * 4980 5317 * 2039 * 2959 4809 * * 6223 * * 6262 1115 * * 48 38 5251 * 1687 537 * 0 7368 1736 1598 P 49 4102 6927 2927 4075 5753 5952 6064 * 4007 3801 6235 3318 2617 3818 3109 4674 4143 * * * 49 11 7081 * 2322 322 * 0 7368 1000 1598 E 50 2753 * 3954 3372 6253 5799 * 5885 4777 2634 5820 5635 2644 4271 4308 3545 5183 4981 * * 50 19 6268 * 0 * 841 1179 7325 1000 1598 N 51 5116 * 2571 5214 6711 5759 5320 * 6418 4840 * 2043 6694 4664 6703 2541 2377 * * 6562 51 11 6984 * 1000 1000 * 0 7355 1000 1000 S 52 3276 5488 2295 2825 * 4634 6131 4251 6778 5241 4676 5466 * 4117 * 2901 3303 5354 6994 * 52 25 5843 * 522 1720 * 0 7363 1716 1000 S 53 6933 * 6853 5820 6389 5061 * 5412 4271 5020 * 6772 3791 6769 5921 2612 871 * * * 53 31 5572 * 2322 322 0 * 7391 1577 1000 V 54 5751 * * * 5193 6432 * 1855 * 3491 4987 * * * * * * 874 * * 54 19 * 6231 * * * * 7393 0 0 Q 55 2792 * 4457 2943 6844 2936 * * 3977 3378 * 5146 7060 3865 4076 2583 5709 5677 * 6405 55 0 * * * * * 0 7360 0 1000 Q 56 4661 * 2284 2346 * 4856 4113 5359 3771 6165 * 4285 * 2823 5385 3897 5736 4259 * * 56 0 * * * * 0 * 7381 0 1000 F 57 6063 6574 * * 2978 * * 3285 * 665 * * * * * * * 3309 6205 * 57 0 * * * * * * 7412 0 0 K 58 6352 * * * * * * 5720 440 4473 5078 6319 * 4764 3668 6197 * * * 6029 58 13 * 6778 * * * * 7412 0 0 E 59 2730 * 5221 2402 * 5848 6412 5882 2564 4908 6196 3068 * 3702 3240 4176 8122 6608 * * 59 0 * * * * * 0 7411 0 1000 A 60 4790 * * 4711 * * 5476 4244 1999 3357 3895 6818 * 2467 2961 5075 4410 4989 * 6797 60 0 * * * * * 0 7411 0 1000 I 61 5561 5726 * * * 6033 6441 1234 * 2047 6654 6534 * * * * 5931 2208 * 6313 61 0 * * * * 0 * 7411 0 1000 S 62 1870 5246 * 2438 4503 5539 4372 * 6029 * 6056 5162 * 3266 4150 3002 6252 5262 * 5705 62 0 * * * * * * 7412 0 0 K 63 2868 * 3390 2194 * 4787 * 6415 3432 4932 5185 5069 6205 3527 4135 3349 4755 6172 6361 * 63 0 * * * * * * 7412 0 0 R 64 5183 * 4109 2859 * * 6767 3426 2596 3401 5536 6039 5378 3427 2555 * 6969 3994 * 5661 64 0 * * * * * * 7446 0 0 F 65 5177 5786 5869 2834 3109 * 6836 3397 4415 3177 5942 6575 6822 5015 5660 7009 2159 4666 6190 4358 65 20 6199 * 1000 1000 * * 7446 1570 0 K 66 5612 5746 4098 3943 * 1092 4777 6592 3605 5496 * 3897 4961 4657 5945 4234 6822 * * * 66 16 6471 * 1000 1000 * * 7446 1000 0 S 67 3957 6010 * * 4152 5900 * 2324 4714 3355 4777 6045 6836 6832 6200 4988 3598 1730 * 6237 67 0 * * * * * * 7446 0 0 Q 68 3876 * 3378 3538 6190 6253 5087 5022 4125 6475 * 5824 1397 3681 5078 4602 4749 6535 * * 68 0 * * * * * * 7446 0 0 T 69 2860 * * 5055 * 6592 5355 3598 4583 4784 6786 7096 1551 4924 * 3617 5697 2859 * 7057 69 35 5369 * 740 1318 * * 7446 2214 0 D 70 3509 * 2816 2368 * 4092 5081 * 3476 * 6422 3740 6560 4201 4998 2567 5400 6918 * 6063 70 11 7056 * 1000 1000 * * 7401 1000 0 Q 71 5902 * 3091 3265 4764 6413 5135 6539 2997 3666 5464 4020 * 2676 2681 4724 6867 5207 * * 71 13 6800 * 1585 585 * * 7401 1000 0 L 72 * 6252 * * 5341 * * 2558 * 3004 4209 * * 908 * * 6382 4164 * 6281 72 0 * * * * * * 7401 0 0 V 73 5988 5010 * 5686 5184 7095 4966 4250 1989 6831 5524 6615 * 4653 1649 5468 4674 3620 6685 6592 73 0 * * * * * * 7401 0 0 L 74 6300 6399 * * 5403 * * 3158 6537 584 4762 * 6608 * * * * 3506 5233 * 74 0 * * * * * * 7401 0 0 I 75 * 5655 * 6260 3688 6592 5154 1681 6228 2507 3991 7014 * 5152 5713 4601 6723 2755 * 4912 75 11 7086 * 1000 1000 * * 7401 1000 0 F 76 5109 3803 * * 1591 6790 3953 4653 6403 4455 * * * * 5686 4577 * 5981 * 1646 76 90 4047 * 0 * * * 7406 3101 0 A 77 3275 6947 4091 4324 * 2598 6217 * 2775 6220 5525 3186 * 3930 3168 3297 5654 * 6403 * 77 20 * 6217 * * * * 7406 0 0 G 78 6771 6643 4560 5683 * 477 6384 * 4694 * * 4996 6221 6687 5328 4353 5546 * * * 78 25 6923 6788 0 * 0 * 7379 1000 1000 K 79 5399 * 5410 6218 * 5209 4299 7029 1611 5317 4975 6563 * 2827 2231 4647 4799 5943 6262 * 79 22 6051 * 0 * 0 * 7186 1741 1000 I 80 5214 5819 * 2822 4114 * 5481 4288 5189 1975 5416 6225 4901 3751 4847 6171 6039 2377 * * 80 14 6672 * 0 * * * 7407 1000 0 L 81 5264 * * 5504 4660 * * 4070 4804 563 4520 * 6287 * 5002 * 5732 4896 * * 81 27 5774 * 3212 165 * * 7407 1696 0 K 82 4749 * 3115 2692 * 5792 * 4911 2093 4221 * 5418 7082 2661 4627 3848 7732 4723 * 6406 82 11 7103 * 1000 1000 * * 7178 1000 0 D 83 6664 * 724 4972 * 5284 5821 * 6771 6269 6399 2843 4142 * 6557 4591 * 5183 * * 83 56 5297 6303 592 1572 * * 7178 1712 0 Q 84 4540 * 2718 2858 * 2784 4228 * 3895 * * 3224 4889 4979 8120 2990 4188 4977 6269 * 84 84 4321 7220 1266 776 0 * 7178 2720 1000 D 85 5516 * 3631 4505 * 5197 4277 5268 1934 4421 4700 3875 * 3365 3653 4549 3819 6880 6769 5271 85 77 4485 7059 335 2270 0 * 7181 2889 1000 T 86 4504 6211 5487 * 6416 6254 5795 5010 3654 4722 * * 4375 4581 5206 3214 1057 6294 * 6542 86 16 6544 * 0 * 0 * 7177 1000 1000 L 87 5590 * * * 5273 * * 2899 * 662 4473 * * * * 6416 * 2938 * * 87 0 * * * * * * 7177 0 0 I 88 2229 * 3871 3242 * 3735 5872 6893 3569 5664 * 5629 * 3993 3666 2252 6607 * * 5253 88 0 * * * * * * 7252 0 0 Q 89 3116 * 2187 2190 4182 4726 5245 6273 4969 6639 6447 * * 3608 * 2830 6055 * * 5476 89 0 * * * * * * 7175 0 0 H 90 3841 2874 * * 4518 * 4445 6206 5113 3079 5558 * * 5349 * 5771 6372 * * 1098 90 26 6635 6956 0 * * * 7117 1000 0 G 91 * 6482 3547 5459 * 986 * * 3221 5825 * 2390 * 5402 5795 5773 * * * * 91 0 * * * * 0 * 7197 0 1000 I 92 * * * * 6267 * * 1161 * 2035 6336 * * * * * 5823 1912 * * 92 0 * * * * * * 7121 0 0 H 93 4289 6352 4672 3515 6427 3822 3284 * 2675 5213 5944 6506 5197 2883 3627 3995 3215 * * * 93 0 * * * * * * 7102 0 0 D 94 4794 * 1792 2712 * 6579 4632 * 3800 6731 * 2354 3992 6374 4782 3912 5847 * * * 94 17 6452 * 0 * * * 7102 1000 0 G 95 6236 6320 3968 4569 * 746 * * 5313 5619 5946 2955 * 5394 5294 6098 5859 * * * 95 17 6422 * 2000 415 * * 7014 1000 0 L 96 2941 3530 3130 6387 4172 5848 4199 * * 5438 5836 6198 * 4610 * 1812 3450 4294 * 7079 96 0 * * * * * * 6893 0 0 T 97 5223 * * 5872 * * * 2909 2952 5274 * * * 4833 5261 4374 1388 2502 * * 97 0 * * * * * * 6893 0 0 V 98 5771 * * * * * * 1473 * 2163 5179 * * * * * * 1432 * * 98 0 * * * * * * 6893 0 0 H 99 7397 6255 4790 4015 4815 * 1221 4134 6311 5202 5082 5248 * 3343 6232 6581 5461 5282 * 3394 99 0 * * * * * * 6881 0 0 L 100 6400 5972 * * 4606 * * 4032 * 877 2752 * * * * * * 2621 * 6082 100 0 * * * * * * 6868 0 0 V 101 5120 * * * 5938 * * 2351 * 3200 5174 5854 * 4441 * 5195 3256 1356 * 4776 101 0 * * * * * * 6647 0 0 I 102 5898 5780 * * 5552 4385 * 2805 * 1516 * * * * * 5425 * 1506 * 5180 102 0 * * * * * * 6388 0 0 K 103 * * * * * * * * 1010 * * * * 3993 1182 * * * * * 103 0 * * 0 * * * 5702 0 0 //