HHsearch 1.5 NAME d1ixsb1 FAM FILE d1ixsb1 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1ixsb1.a3m DATE Wed Mar 10 04:58:25 2010 LENG 76 match states, 76 columns in multiple alignment FILT 40 out of 44 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.7 EVD 0.4518 1.8896 SEQ >ss_dssp CCCCHHHHHHHHTTTSSSCSSCCCSHHHHGGGSSCTTHHHHTSHHHHHHTTSEEECSSSEEECHHHHHHHTCCCCC >sa_dssp EEBEEBBDDAACCABEECEDCCCBCEDAAECBEDDCCDACEECADCACECDABEDCEEBBCBCEDABDDCEDEEEE >ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCC >ss_conf 9888899999999999628873469999999688766788655579998344420731445239999980899899 >Consensus lGLdxxDxxyLxxlixxfxggpvGLxtiAxxlxexxxTiexxiEPyLixxgxIxrTxRGRxxTxxgxxxLxxxxpx >d1ixsb1 LGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGRVATELAYRHLGYPPPV >UniRef50_A3PFA5(278-345:352) Holliday junction ATP-dependent DNA helicase ruvB n=7 Tax=Prochlorococcus marinus RepID=RUVB_PROM0 E=1e-06 s/c=0.80 id=43% cov=91% -GLDSLDRHYLS-FINQNNNIPIGLDSIAAGLGDDSSMLEFVVEPYLIKIGFLTRTPRGRLLTALGKKYI------ >UniRef50_B5Y8Y6(246-312:320) Holliday junction DNA helicase RuvB n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y8Y6_COPPD E=2e-05 s/c=0.75 id=41% cov=89% -GLSPLDKDYIRTLAETFKGGPSGIRVLASALGMDVETLEGVVEPYLMMLGFVTVTSRGRKLTDKGWK-------- >UniRef50_B1AJ89(238-306:312) Holliday junction ATP-dependent DNA helicase ruvB n=15 Tax=Ureaplasma RepID=RUVB_UREP2 E=7e-10 s/c=0.94 id=33% cov=91% FGLDEQDINYLNVLYRQDN--EIGLKSIAQILRLDQYTIETKIEPYLIQHHFINKNLRGRKITIEGIDFL------ >UniRef50_A5IY13(242-311:320) Holliday junction DNA helicase ruvB n=3 Tax=Mycoplasma RepID=A5IY13_MYCAP E=7e-08 s/c=0.83 id=31% cov=93% LGLNKEHIEYLSLLSNSFYDKFVSIDAISGILNMSKENLINDIEPYLLYLQLIEKSPRGRRITTKGVDYL------ >UniRef50_Q6F144(242-307:315) Holliday junction DNA helicase n=3 Tax=Mollicutes RepID=Q6F144_MESFL E=5e-05 s/c=0.74 id=27% cov=88% -GLNEKDLDYLFTLLENNT---LSLDSLAQIINVPNQTILNNMEPIFLKERLIIKTGRGRQLTNKGKIYL------ >UniRef50_Q7UPG4(287-361:366) Holliday junction ATP-dependent DNA helicase ruvB n=1 Tax=Rhodopirellula baltica RepID=RUVB_RHOBA E=3e-22 s/c=1.40 id=45% cov=100% LGLDKQDRNYLDTLMRVFLGGPAGLDAIAHTMNVSSDTLEDEVEPFLLRSELLVRTRRGRLATPKAFEHMKRQMP- >UniRef50_C0QKP4(277-348:354) Holliday junction ATP-dependent DNA helicase ruvB n=2 Tax=Bacteria RepID=RUVB_DESAH E=1e-20 s/c=1.39 id=44% cov=96% -GLTVLDRNYLRTIIEFYRGGPVGIEAVAATLQEETDTLVDVVEPYLLKIGMVMRTSAGRRASVGAYEHLGIK--- >UniRef50_P75242(238-304:307) Holliday junction ATP-dependent DNA helicase ruvB n=2 Tax=Mycoplasma RepID=RUVB_MYCPN E=3e-15 s/c=1.24 id=29% cov=89% -GLQSIDVQYLKALNGQYE--PQGIKSICSMLGIDKSTVENKIEPFLLRENMIQKTKKGRIITRTGRNYL------ >UniRef50_UPI00016C564A(243-309:318) Holliday junction DNA helicase RuvB n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C564A E=2e-05 s/c=0.75 id=36% cov=88% LGLGPTEQQYLAVLGE----GANRLNVIASRLGLPTRTVAEVTEPFLIRAGLVAKDDQGRRqLTAEGRDHF------ # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * L 1 * * * * 2914 * * 4302 * 292 * * * * * * * * * * 1 0 * * * * * * 3083 0 0 G 2 * * * * * 0 * * * * * * * * * * * * * * 2 0 * * * * * * 3813 0 0 L 3 * * * * 2929 * * * * 203 * * * * * * * * * * 3 0 * * * * * * 3813 0 0 E 4 * * 931 4741 * 4498 * * * * * 2694 * 4909 * 2999 4417 4876 * * 4 0 * * * * * * 3813 0 0 K 5 3699 * 5662 1648 5643 3854 5863 5837 3363 * * 5208 3731 5029 4411 3597 5772 5282 5472 4876 5 0 * * * * * * 3813 0 0 R 6 * * * 4951 * * * 3143 4606 2321 2554 4705 * 3034 4758 3605 2851 5325 * * 6 29 5662 * 2322 322 * * 3813 1000 0 D 7 * * 339 4498 * * 4951 * * * * 5029 * 3922 * 4784 * * * * 7 0 * * * * * * 3813 0 0 R 8 * * * * * * * 2162 4286 3380 * * * 3999 1157 * * 3301 * 5906 8 0 * * * * * * 3813 0 0 E 9 4408 * 3793 2493 * * 4935 * 2796 5629 * 2679 * 2930 2558 4349 * * * * 9 0 * * * * * * 3813 0 0 I 10 * * * * * * * 2484 * 2552 5863 * * * * * * 5312 * 717 10 0 * * * * * * 3813 0 0 L 11 * * * * * * * 4299 * 114 5325 * * * * * * * * * 11 0 * * * * * * 3813 0 0 E 12 4498 * 4296 2992 4104 4975 * * 2555 4241 * 3566 * 4584 2096 3534 5662 * * * 12 48 * 4935 * * * * 3813 0 0 V 13 3098 3631 * * 3938 * * 4760 * 3398 * * * * * 3650 1501 2535 * * 13 41 * 5170 * * 0 * 3786 0 1000 L 14 * * * * 4917 * * 1930 * 851 3158 * * * * * * 4717 * * 14 35 * 5381 * * * 0 3787 0 1000 I 15 3850 * * * * 4460 3751 1281 5800 3911 5233 4811 * * * 3855 * 3091 * 3912 15 0 * * * * * 0 3781 0 1421 L 16 * * 3184 1329 * 4811 5761 * 3823 4717 * 3805 * 4103 2934 5017 * * * 4729 16 67 * 4460 * * 958 1044 3781 0 1421 R 17 * * 5899 * 4301 * 4423 3145 3270 5612 * 2385 * 3219 3083 4243 3858 3514 * 5472 17 46 * 4998 * * 1000 1000 3696 0 1598 F 18 * * 4069 * 1068 * * * * * * 3685 * * * * 5052 * * 1492 18 0 * * * * 938 1065 3705 0 1664 G 19 4730 * 3563 4811 * 2998 * * 2280 5234 * 2595 * 3924 4122 3584 4518 * * 3864 19 224 * 2796 * * * 0 3722 0 1000 G 20 * * 2580 * * 470 * * 4605 * * 3844 * * * * * * * * 20 0 * * * * 2132 374 3496 0 2364 G 21 * * * * * 581 * 4635 2421 * * 3968 * * * 4620 * * * * 21 0 * * * * 958 1044 3609 0 2081 P 22 3619 * * 4697 3809 * * * * * * * 440 * * 3805 * * * * 22 47 4958 * 1585 585 0 * 3715 1000 1444 V 23 4373 * * * * 4876 * 3915 * 3380 5076 4498 * 4909 * 5009 5517 748 * * 23 0 * * * * * * 3813 0 0 G 24 3901 * * * * 416 * * * * * * * * 4498 2843 * * * * 24 0 * * * * * * 3813 0 0 L 25 5955 * * * * * * 2214 * 625 5551 * * * * * * 3345 * * 25 0 * * * * * * 3813 0 0 A 26 5861 * 1383 2381 * 5312 * * 2245 * * 3853 * 5528 5009 4339 * * * * 26 0 * * * * * * 3813 0 0 T 27 2411 * * * * * * * * 4970 * 4737 * * * 2262 1352 2814 * * 27 0 * * * * * * 3813 0 0 L 28 * * * * * * * 1063 * 1230 5472 * * * * * * 3780 * * 28 0 * * * * * * 3813 0 0 A 29 525 4909 * * * 4640 * * * * * * * * * 2613 * 3874 * * 29 0 * * * * * * 3813 0 0 T 30 1410 * * * * 2893 4391 5722 * 5208 5551 5029 * 3284 * 2939 5861 3422 * * 30 0 * * * * * * 3813 0 0 A 31 1967 * * * 4970 4197 * 2105 * * 4909 * * * 4498 2675 3161 3652 * * 31 0 * * * * * * 3813 0 0 L 32 * * * * * * * 2945 * 678 4391 * * * * 5208 4690 2925 * * 32 0 * * * * * * 3813 0 0 S 33 5325 * * * * 1253 * * 3901 * * 2299 * 4417 4895 2287 * * * * 33 0 * * * * * * 3813 0 0 E 34 * * 3905 871 * * * 3658 * 2746 3980 * * * * * * 3400 * * 34 0 * * * * * * 3813 0 0 D 35 4676 * 1573 1980 * * 5029 * * * * * 3551 3510 * 2946 4725 * * * 35 0 * * * * * * 3813 0 0 P 36 3632 5208 * 3207 * * * 4736 2926 * * 4606 3658 4895 2838 4097 2507 3524 * * 36 0 * * * * * * 3813 0 0 G 37 * * 1827 2664 5208 3536 * * 4065 * * * * 2586 3931 3322 5528 * * 4895 37 0 * * * * * * 3813 0 0 T 38 4587 * * * * * * 5528 * * 4935 4206 * * * 5722 301 5718 * * 38 0 * * * * * * 3813 0 0 L 39 * * * * * * * 846 * 1632 * * * * * * * 3047 * * 39 0 * * * * * * 3813 0 0 E 40 4498 * * 698 * * * 2372 5850 4606 * * * * * 4615 * 4417 * * 40 0 * * * * * * 3813 0 0 E 41 * * 1620 1878 4935 5009 4784 * * * * 2545 * * * 3355 4895 * * * 41 0 * * * * * * 3813 0 0 V 42 5076 * 4951 3138 4622 * * 2775 3036 * 5551 4606 * * * * 3485 1457 * * 42 0 * * * * * * 3813 0 0 H 43 5312 * * * * * 4856 1279 * 5643 4606 * * * * * 4498 2335 * 2153 43 0 * * * * * * 3813 0 0 E 44 * * * 0 * * * * * * * * * * * * * * * * 44 0 * * * * * * 3813 0 0 P 45 * * * * * * * * * * * * 47 * * 4975 * * * * 45 0 * * * * * * 3813 0 0 Y 46 * * * * 1653 * * 4606 * 3290 * * 5029 * * * * * * 977 46 0 * * * * * * 3813 0 0 L 47 * * * * 4606 * * * * 109 4975 * * * * * * * * * 47 0 * * * * * * 3813 0 0 I 48 * * * * 5312 * * 1146 * 1546 3418 * * * * * * 3523 * * 48 0 * * * * * * 3813 0 0 R 49 4300 * * 3901 * * * * 2504 4634 5009 * * 1644 2208 4970 * 4876 * 4951 49 0 * * * * * * 3813 0 0 Q 50 3848 4569 * 3389 * * 4895 2439 3222 3014 3944 3482 * 3174 * 4486 * * * 4876 50 0 * * * * * * 3813 0 0 G 51 * * * 3675 4784 731 4895 * 4876 * * 2816 * 4951 4606 * * * * * 51 0 * * * * * * 3813 0 0 L 52 * * * * 1371 * * * * 1144 3667 * * * * * * * * 3605 52 0 * * * * * * 3813 0 0 L 53 * * * * * * * 789 * 1856 5472 * * * * * * 3031 * * 53 0 * * * * * * 3813 0 0 K 54 3986 * 5325 2310 * * * 3581 3537 * 5282 3095 * 2142 * 5161 3972 3652 * * 54 0 * * * * * * 3813 0 0 R 55 * * * * * * * * 1425 * * * * * 745 * * 5009 * * 55 0 * * * * * * 3813 0 0 T 56 * * 4498 * * 5727 * * * * * 4895 * * * 3501 295 * * * 56 0 * * * * * * 3813 0 0 P 57 3840 * 4498 * * 4606 * 3960 4909 4895 * * 1052 * 5280 2282 * * * * 57 0 * * * * * * 3813 0 0 R 58 4120 * * * * * * * 3634 * * 5161 * 4498 380 5566 * * * * 58 0 * * * * * * 3813 0 0 G 59 * * * * * 0 * * * * * * * * * * * * * * 59 0 * * * * * * 3813 0 0 R 60 * * * * * * * * * * * * * * 0 * * * * * 60 0 * * * * * * 3813 0 0 V 61 * * * * * * * 2847 2393 3691 3336 * * 3876 2563 * * 1961 * * 61 65 4498 * 0 * * * 3813 1000 0 A 62 1301 * * * * * * 1668 * 2198 * * * * * * * 4026 * * 62 0 * * * * * * 3813 0 0 T 63 * * * * * * * * * * * * * * * 4175 82 * * * 63 0 * * * * * * 3813 0 0 E 64 2656 * 3367 2989 * 5850 5325 3866 5029 5528 * 4029 3373 2893 4909 4575 4951 4175 * * 64 0 * * * * * * 3813 0 0 L 65 2694 * * 3329 5722 5282 * 5850 1381 3143 * 4011 * 4784 4786 5718 4909 * * * 65 0 * * * * * * 3813 0 0 A 66 1172 * * * * 981 * * * * * * * * * * 4332 * * * 66 0 * * * * * * 3813 0 0 Y 67 * 5772 * * 3958 * * 2752 3761 4473 * * * * 3209 * * 3561 3396 1465 67 0 * * * * * * 3813 0 0 R 68 4144 * 2814 2158 * 5601 * 4600 3212 * * 4016 * 4500 2252 4193 * * 4767 * 68 0 * * * * * * 3811 0 0 H 69 * * * * 3969 * 1236 * * * 5035 * * 4944 * * * * * 1157 69 0 * * * * * * 3788 0 0 L 70 * * * * 2932 * * 4246 * 341 5235 * * * * * * * * * 70 0 * * * * * * 3788 0 0 G 71 * * * * * 690 * * 2231 * * 3269 * * 3980 * * * * * 71 0 * * * * * * 2739 0 0 Y 72 * * * * 4620 * * 2577 * 2097 3546 * * * 2487 * * 3548 4389 2636 72 0 * * * * * * 2739 0 0 P 73 * * * * * * * * 3095 * * 3098 1445 3685 * 2154 3376 * * * 73 0 * * * * * * 2713 0 0 P 74 4371 * * * * * * * * * 3495 * 1551 * * 2960 * 1926 * 2942 74 0 * * * * * * 2641 0 0 P 75 * * * * * * * * 2260 * * * 338 * * * * * * * 75 0 * * * * * * 2605 0 0 V 76 * * * * * * * 1000 * * * * * * * * * 1000 * * 76 0 * * 0 * * * 1339 0 0 //