HHsearch 1.5 NAME d1ixrc1 FAM FILE d1ixrc1 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1ixrc1.a3m DATE Wed Mar 10 04:57:29 2010 LENG 70 match states, 70 columns in multiple alignment FILT 40 out of 44 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.8 EVD 0.4537 2.0295 SEQ >ss_dssp CCCCTHHHHHHHHHHTTTCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHTSSSEEEETTEEEECHHHHTTC >sa_dssp EECEECBDCABCCACEECCCDDCCCEDAAECBECEDDDACEECADCADEDDBBEDCEEBBBBCEEBDEDE >ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC >ss_conf 9888899999999999728873479999999688866788655579998344410731545129988409 >Consensus lGLdxxDxxyLxxlixxfxggpvGlxtiAxxlxexxxTiexxiEPyLixxgxixrTxRGRxxTxxgxxxL >d1ixrc1 LGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGRVATELARRHL >UniRef50_D2R652(277-346:352) Holliday junction DNA helicase RuvB n=5 Tax=Planctomycetaceae RepID=D2R652_9PLAN E=1e-08 s/c=0.87 id=44% cov=101% LGLDKQDRAYLETILRVFSGGPVGVDSVAHTMNLATDTLSDEVEPFLLRCELIVRSPRGRMLTSKAFEHL >UniRef50_Q3YRD9(256-323:329) Holliday junction ATP-dependent DNA helicase ruvB n=3 Tax=canis group RepID=RUVB_EHRCJ E=2e-18 s/c=1.37 id=43% cov=99% LGLDRQDIQYLKFI--HDSNNPTGIDTISSGLSEDTGNIEETIEPYLIKINFIQRTPRGRVITQKAISYL >UniRef50_P75242(238-304:307) Holliday junction ATP-dependent DNA helicase ruvB n=2 Tax=Mycoplasma RepID=RUVB_MYCPN E=1e-09 s/c=0.96 id=31% cov=97% -GLQSIDVQYLKALNGQYE--PQGIKSICSMLGIDKSTVENKIEPFLLRENMIQKTKKGRIITRTGRNYL >UniRef50_A5IY13(242-311:320) Holliday junction DNA helicase ruvB n=3 Tax=Mycoplasma RepID=A5IY13_MYCAP E=2e-07 s/c=0.82 id=31% cov=101% LGLNKEHIEYLSLLSNSFYDKFVSIDAISGILNMSKENLINDIEPYLLYLQLIEKSPRGRRITTKGVDYL >UniRef50_A7HJD6(261-330:347) Holliday junction ATP-dependent DNA helicase ruvB n=2 Tax=Bacteria RepID=RUVB_FERNB E=1e-20 s/c=1.43 id=45% cov=101% FGLDEMDRKILKTIIEIYKGGPVGLKSLAASLGITEDTISEVYEPFLVQSGFIARGARGRIATEKAYKYL >UniRef50_B1AJ89(238-305:312) Holliday junction ATP-dependent DNA helicase ruvB n=15 Tax=Ureaplasma RepID=RUVB_UREP2 E=2e-15 s/c=1.22 id=33% cov=99% FGLDEQDINYLNVLYRQ--DNEIGLKSIAQILRLDQYTIETKIEPYLIQHHFINKNLRGRKITIEGIDFL >UniRef50_UPI00016C564A(243-308:318) Holliday junction DNA helicase RuvB n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C564A E=4e-05 s/c=0.74 id=38% cov=94% LGLGPTEQQYLAVLGE----GANRLNVIASRLGLPTRTVAEVTEPFLIRAGLVAKDDQGRRqLTAEGRDH- >UniRef50_B5Y8Y6(246-312:320) Holliday junction DNA helicase RuvB n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y8Y6_COPPD E=6e-17 s/c=1.32 id=41% cov=97% -GLSPLDKDYIRTLAETFKGGPSGIRVLASALGMDVETLEGVVEPYLMMLGFVTVTSRGRKLTDKGWK-- >UniRef50_Q6F144(242-307:315) Holliday junction DNA helicase n=3 Tax=Mollicutes RepID=Q6F144_MESFL E=2e-11 s/c=1.06 id=27% cov=96% -GLNEKDLDYLFTLLENNT---LSLDSLAQIINVPNQTILNNMEPIFLKERLIIKTGRGRQLTNKGKIYL # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * L 1 * * * * 2808 * * 4204 * 317 * * * * * * * * * * 1 0 * * * * * * 3059 0 0 G 2 * * * * * 0 * * * * * * * * * * * * * * 2 0 * * * * * * 3849 0 0 L 3 * * * * 2756 * * * * 231 * * * * * * * * * * 3 0 * * * * * * 3849 0 0 E 4 * * 999 4694 * 4510 * * * * * 2496 * 4902 * 3001 4401 4865 * * 4 0 * * * * * * 3849 0 0 K 5 3346 * * 1660 5645 3824 5848 5838 3388 * * 5276 3728 5016 4363 3612 5759 5264 5449 4865 5 0 * * * * * * 3849 0 0 R 6 * * * 4938 * 5578 * 3126 4592 2337 2572 4693 * 3045 5773 3594 2845 5370 * * 6 0 * * * * * * 3849 0 0 D 7 * * 341 4510 * * 4938 * * * * 5016 * 3912 * 4773 * * * * 7 0 * * * * * * 3849 0 0 R 8 * * * * * * * 2164 4267 3385 * * * 4003 1159 * * 3292 * 5889 8 0 * * * * * * 3849 0 0 E 9 4391 * 3775 2486 * * 4989 * 2799 5620 * 2729 * 2907 2546 4328 * * * * 9 0 * * * * * * 3849 0 0 I 10 * * * * * * * 2461 * 2580 5848 * * * * * * 5295 * 717 10 0 * * * * * * 3849 0 0 L 11 * * * * * * * 4251 * 115 5370 * * * * * * * * * 11 46 * 4989 * * * * 3849 0 0 E 12 4496 * 4333 2983 4046 4910 * * 2487 4220 * 3501 * 4540 2030 4157 5538 * * * 12 0 * * * * 0 * 3828 0 1000 V 13 2935 3637 * * 4017 * * 4773 * 3480 * * * * * 3205 1628 2565 * * 13 38 * 5276 * * * * 3849 0 0 L 14 * * * * 4963 * * 1923 * 860 3129 * * * * * * 4674 * * 14 36 * 5361 * * * 0 3828 0 1000 I 15 3832 * * * * 4481 3760 1286 * 3888 5423 4800 * * 5901 3853 * 3070 * 3853 15 0 * * * * * 0 3822 0 1414 L 16 * * 3177 1315 * 4800 5759 * 3812 4675 * 3830 * 4110 2945 5218 * * * 4727 16 66 * 4481 * * 957 1044 3822 0 1414 R 17 * * 5887 * 4279 * 4408 3135 3304 5531 * 2406 * 3212 3050 4232 3843 3561 * 5457 17 97 * 3949 * * 1000 1000 3742 0 1609 F 18 * * 5282 * 1020 * * * * * * 3642 * * * * 4876 * * 1447 18 0 * * * * 1490 635 3709 0 1987 G 19 4677 * 3535 4760 * 2937 * * 2189 5370 * 2887 * 3895 4186 3503 4461 * * 3779 19 177 * 3111 * * 958 1044 3718 0 1544 G 20 * * 2318 * * 524 * * 4672 * * 3943 * * * * * * * * 20 0 * * * * 1876 459 3585 0 2170 G 21 * * * * * 624 * 4764 2513 * * 3316 * * * 4688 * * * * 21 0 * * * * 1481 640 3688 0 1811 P 22 3622 * * 4667 3799 * * * * * * * 443 * * 3794 * * * * 22 45 5012 * 1585 585 0 * 3745 1000 1444 V 23 4463 * * * * 4865 * 3924 * 3385 5261 4510 * 4902 * 4985 5436 735 * * 23 0 * * * * * * 3849 0 0 G 24 3889 * * * * 419 * * * * * * * * 4510 2831 * * * * 24 0 * * * * * * 3849 0 0 L 25 5943 * * * * * * 2192 * 635 5525 * * * * * * 3336 * * 25 0 * * * * * * 3849 0 0 A 26 5773 * 1387 2368 * 5295 * * 2240 * * 3876 * 5520 4985 4411 * * * * 26 0 * * * * * * 3849 0 0 T 27 2301 * * * * * * * * 4961 * 4738 * * * 2267 1408 2806 * * 27 0 * * * * * * 3849 0 0 L 28 * * * * * * * 1071 * 1226 5449 * * * * * * 3763 * * 28 0 * * * * * * 3849 0 0 A 29 529 4902 * * * 4633 * * * * * * * * * 2602 * 3864 * * 29 0 * * * * * * 3849 0 0 T 30 1424 * * * * 2882 4486 5713 * 5276 5525 5016 * 3261 * 2921 5773 3397 * * 30 0 * * * * * * 3849 0 0 A 31 1963 * * * 4961 4195 * 2098 * * 4902 * * * 4510 2675 3192 3650 * * 31 0 * * * * * * 3849 0 0 L 32 * * * * * * * 2937 * 676 4486 * * * * 5276 4670 2901 * * 32 0 * * * * * * 3849 0 0 S 33 5370 * * * * 1250 * * 3889 * * 2311 * 4401 4862 2288 * * * * 33 0 * * * * * * 3849 0 0 E 34 * * 3926 864 * * * 3675 * 2736 3961 * * * * * * 3436 * * 34 0 * * * * * * 3849 0 0 D 35 4660 * 1576 1964 * * 5016 * * * * * 3550 3501 * 2989 4714 * * * 35 0 * * * * * * 3849 0 0 P 36 3622 5276 * 3231 * * * 4725 2916 * * 4592 3633 4862 2829 4213 2499 3504 * * 36 0 * * * * * * 3849 0 0 G 37 * * 1759 2815 5276 3557 * * 4026 * * * * 2564 3930 3333 5520 * * 4862 37 0 * * * * * * 3849 0 0 T 38 4606 * * * * * * 5520 * * 4989 4166 * * * 5713 301 5718 * * 38 0 * * * * * * 3849 0 0 L 39 * * * * * * * 845 * 1636 * * * * * * * 3043 * * 39 0 * * * * * * 3849 0 0 E 40 4510 * * 705 * * * 2358 5838 4592 * * * * * 4600 * 4401 * * 40 0 * * * * * * 3849 0 0 E 41 * * 1633 1862 4989 4985 4773 * * * * 2533 * * * 3387 4862 * * * 41 0 * * * * * * 3849 0 0 V 42 5261 * 4938 3171 4613 * * 2776 3033 * 5525 4592 * * * * 3445 1449 * * 42 0 * * * * * * 3849 0 0 H 43 5295 * * * * * 4805 1281 * 5645 4592 * * * * * 4510 2356 * 2142 43 0 * * * * * * 3849 0 0 E 44 * * * 0 * * * * * * * * * * * * * * * * 44 0 * * * * * * 3849 0 0 P 45 * * * * * * * * * * * * 48 * * 4927 * * * * 45 0 * * * * * * 3849 0 0 Y 46 * * * * 1658 * * 4592 * 3279 * * 5016 * * * * * * 978 46 0 * * * * * * 3849 0 0 L 47 * * * * 4592 * * * * 111 4927 * * * * * * * * * 47 0 * * * * * * 3849 0 0 I 48 * * * * 5295 * * 1133 * 1576 3400 * * * * * * 3498 * * 48 0 * * * * * * 3849 0 0 R 49 4399 * * 3889 * * * * 2503 4616 4985 * * 1631 2221 4961 * 4865 * 4938 49 0 * * * * * * 3849 0 0 Q 50 3849 4556 * 3378 * * 4862 2432 3207 3009 3966 3528 * 3143 * 4592 * * * 4865 50 0 * * * * * * 3849 0 0 G 51 * * * 3727 4773 732 4862 * 4865 * * 2806 * 4938 4592 * * * * * 51 0 * * * * * * 3849 0 0 L 52 * * * * 1365 * * * * 1144 3637 * * * * * * * * 3661 52 0 * * * * * * 3849 0 0 L 53 * * * * * * * 784 * 1872 5449 * * * * * * 3021 * * 53 0 * * * * * * 3849 0 0 K 54 3990 * 5370 2318 * * * 3566 3536 * 5264 3067 * 2132 * 5133 3987 3704 * * 54 0 * * * * * * 3849 0 0 R 55 * * * * * * * * 1419 * * * * * 750 * * 4985 * * 55 0 * * * * * * 3849 0 0 T 56 * * 4510 * * 5715 * * * * * 4862 * * * 3488 298 * * * 56 0 * * * * * * 3849 0 0 P 57 3903 * 4510 * * 4592 * 3942 4902 4862 * * 1036 * 5478 2287 * * * * 57 0 * * * * * * 3849 0 0 R 58 4086 * * * * * * * 3651 * * 5133 * 4510 381 5552 * * * * 58 0 * * * * * * 3849 0 0 G 59 * * * * * 0 * * * * * * * * * * * * * * 59 0 * * * * * * 3849 0 0 R 60 * * * * * * * * * * * * * * 0 * * * * * 60 0 * * * * * * 3849 0 0 V 61 * * * * * * * 2680 2368 3778 3324 * * 3894 2556 * * 2057 * * 61 65 4510 * 0 * * * 3849 1000 0 A 62 1308 * * * * * * 1662 * 2197 * * * * * * * 4010 * * 62 0 * * * * * * 3849 0 0 T 63 * * * * * * * * * * * * * * * 4263 77 * * * 63 0 * * * * * * 3849 0 0 E 64 2661 * 3349 2945 * 5838 5370 3842 5016 5520 * 4017 3432 2888 4902 4568 4938 4263 * * 64 0 * * * * * * 3849 0 0 L 65 2679 * * 3321 5713 5264 * 5838 1390 3164 * 3993 * 4773 4781 5718 4902 * * * 65 0 * * * * * * 3849 0 0 A 66 1166 * * * * 977 * * * * * * * * * * 4440 * * * 66 0 * * * * * * 3849 0 0 R 67 * 5759 * * 4023 * * 2740 3777 4494 * * * * 2982 * * 3549 3376 1537 67 0 * * * * * * 3849 0 0 R 68 4171 * 2803 2190 * 5591 * 4586 3215 * * 3999 * 4540 2228 4158 * * 4756 * 68 0 * * * * * * 3847 0 0 H 69 * * * * 3930 * 1173 * * * * * * 4894 * * * * * 1129 69 0 * * * * * * 3760 0 0 L 70 * * * * * * * 4081 * 135 5050 * * * * * * * * * 70 0 * * 0 * * * 3643 0 0 //