HHsearch 1.5 NAME d1in4a1 FAM FILE d1in4a1 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1in4a1.a3m DATE Wed Mar 10 04:59:05 2010 LENG 75 match states, 75 columns in multiple alignment FILT 40 out of 44 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.7 EVD 0.4475 1.7485 SEQ >ss_dssp CCCCHHHHHHHHHHHHHSTTCCBCHHHHHHHHTSCHHHHHHHTHHHHHHTTSEEEETTEEEECHHHHHHTTCCCC >sa_dssp EEBDECBDDAADBABEECEBCDBDCEDABEDBECECEDABEECADEACEBDABCDDEEBCCBCEDABEDCECEDE >ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCC >ss_conf 988989999999999973898336999999968876778865448999834542174043512999998199997 >Consensus xGLdxxDxxyLxxlixxfxggpvGLxtiAxxlxexxxTiexxiEPyLixxgxIxrTxRGRxxTxxgxxxLxxxxp >d1in4a1 EGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYEPYLLQAGFLARTPRGRIVTEKAYKHLKYEVP >UniRef50_B0B9E8(255-327:334) Holliday junction ATP-dependent DNA helicase ruvB n=8 Tax=Chlamydia RepID=RUVB_CHLT2 E=4e-23 s/c=1.49 id=45% cov=99% -GLNEIDIKLLSVMIDFYQGGPVGMKTLAMAVGEDVRTLEDMYEPFLILKGLVQRTARGRVATPLAYEHLNRNP- >UniRef50_A8EVP9(258-330:345) Holliday junction ATP-dependent DNA helicase ruvB n=19 Tax=Bacteria RepID=RUVB_ARCB4 E=4e-20 s/c=1.36 id=39% cov=99% -GFDEMDINLLELLISN-RGKPMGLSTIAAALSEDEGTIEDAIEPYLLANGYIERTARGRVASVKTYEMFRLSYP >UniRef50_P75242(238-304:307) Holliday junction ATP-dependent DNA helicase ruvB n=2 Tax=Mycoplasma RepID=RUVB_MYCPN E=3e-11 s/c=1.04 id=31% cov=91% -GLQSIDVQYLKALNGQYE--PQGIKSICSMLGIDKSTVENKIEPFLLRENMIQKTKKGRIITRTGRNYL----- >UniRef50_UPI00016C564A(244-309:318) Holliday junction DNA helicase RuvB n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C564A E=0.0006 s/c=0.69 id=35% cov=88% -GLGPTEQQYLAVLGE----GANRLNVIASRLGLPTRTVAEVTEPFLIRAGLVAKDDQGRRqLTAEGRDHF----- >UniRef50_A3PFA5(277-345:352) Holliday junction ATP-dependent DNA helicase ruvB n=7 Tax=Prochlorococcus marinus RepID=RUVB_PROM0 E=2e-16 s/c=1.26 id=44% cov=93% KGLDSLDRHYL-SFINQNNNIPIGLDSIAAGLGDDSSMLEFVVEPYLIKIGFLTRTPRGRLLTALGKKYI----- >UniRef50_Q98PR1(244-314:315) Holliday junction ATP-dependent DNA helicase ruvB n=3 Tax=Mycoplasma RepID=RUVB_MYCPU E=3e-16 s/c=1.22 id=29% cov=96% -GLNESQVKYLRSLSETFYKKAVSLDLIVGFLSLQKETIISEIEPLLISNNLIVKTPRGRKITQKGISYLER--- >UniRef50_B1AJ89(239-306:312) Holliday junction ATP-dependent DNA helicase ruvB n=15 Tax=Ureaplasma RepID=RUVB_UREP2 E=6e-16 s/c=1.25 id=33% cov=92% -GLDEQDINYLNVLYR--QDNEIGLKSIAQILRLDQYTIETKIEPYLIQHHFINKNLRGRKITIEGIDFLK---- >UniRef50_Q6F144(242-308:315) Holliday junction DNA helicase n=3 Tax=Mollicutes RepID=Q6F144_MESFL E=2e-12 s/c=1.10 id=32% cov=91% -GLNEKDLDYLFTLLENNT---LSLDSLAQIINVPNQTILNNMEPIFLKERLIIKTGRGRQLTNKGKIYLE---- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * E 1 * * * 2420 * * * * 1223 * * * * 2492 2272 * * * * * 1 0 * * * * * * 2883 0 0 G 2 * * * * * 0 * * * * * * * * * * * * * * 2 0 * * * * * * 3818 0 0 L 3 * * * * 2702 * * * * 241 * * * * * * * * * * 3 0 * * * * * * 3818 0 0 D 4 * * 948 5522 * 4524 * * * * * 2480 * 4934 * 3010 4399 4915 * * 4 0 * * * * * * 3818 0 0 E 5 3329 * * 1564 5654 3831 5881 5843 3660 * * 5220 3739 5035 4478 3605 5768 5292 5481 4915 5 0 * * * * * * 3818 0 0 F 6 * * * 4975 6047 5573 * 3104 4578 2300 2554 4711 * 3061 * 3628 2872 5319 * * 6 0 * * * * * * 3818 0 0 D 7 * * 332 4524 * * 4975 * * * * 5035 * 3951 * 4821 * * * * 7 46 * 4983 * * * * 3818 0 0 R 8 * * * * * * * 2128 4207 3808 * * * 3984 1118 * * 3256 * 5875 8 0 * * * * * 0 3782 0 1000 K 9 4381 * 3735 2603 * * 4865 * 2609 5486 * 2631 * 2903 2523 5468 * * * * 9 0 * * * * * 0 3782 0 1000 I 10 * * * * * * * 2440 * 2529 5857 * * * * * * 5277 * 739 10 0 * * * * 0 * 3782 0 1000 L 11 * * * * * * * 4254 * 116 5319 * * * * * * * * * 11 48 * 4932 * * * * 3818 0 0 K 12 4510 * 4242 3173 3937 4943 * * 2420 5287 * 3502 * 4560 2047 3508 5534 * * * 12 0 * * * * 0 * 3792 0 1000 T 13 2929 4285 * * 4119 * * 4821 * 3447 * * * * * 3177 1545 2757 * 4983 13 39 * 5220 * * * * 3818 0 0 I 14 * * * * 4908 * * 2022 * 814 3155 * * * * * * 4673 * * 14 0 * * * * * 0 3794 0 1000 I 15 3873 * * * * 4503 3459 1315 * 3327 5251 4869 * * 5797 3945 * 3100 * 4831 15 0 * * * * * 0 3794 0 1000 E 16 * 4937 2950 1401 * 4869 5800 * 3825 5638 * 3924 * 4151 2964 5063 * * * 4787 16 152 * 3325 * * * 0 3794 0 1000 I 17 * * 5830 * 4243 * 5334 2514 3204 5474 * 2555 * 3693 3269 4136 3772 3422 * 5373 17 48 * 4941 * * 2036 403 3655 0 2134 Y 18 * * * * 1041 * * * * * * 3574 * * * * * * * 1217 18 0 * * * * 465 1859 3666 0 2226 R 19 4737 * 3555 3880 * 3212 * * 2510 5236 * 2936 * 3302 3772 3602 4493 * * 3889 19 119 * 3654 * * * 0 3729 0 1000 G 20 * * 2424 * * 562 * * 4750 * * 3338 * * * * * * * * 20 0 * * * * 1585 585 3601 0 1972 G 21 * * * * * 666 * 4714 2553 * * 3492 * * * 4786 4786 * * * 21 0 * * * * 979 1022 3704 0 1576 P 22 3673 * * 4837 3877 * * * 4898 * * * 481 * * 3866 * * * * 22 44 5061 * 1585 585 0 * 3749 1000 1000 V 23 4378 * * * * 4915 * 3912 * 3317 5090 4524 * 4934 * 4993 5689 747 * * 23 0 * * * * * * 3818 0 0 G 24 3924 * * * * 411 * * * * * * * * 4524 2854 * * * * 24 0 * * * * * * 3818 0 0 L 25 5952 * * * * * * 2225 * 626 5544 * * * * * * 3316 * * 25 0 * * * * * * 3818 0 0 N 26 * * 1397 2365 * 5294 * * 2225 * * 3579 * 5544 4993 4311 * * * * 26 0 * * * * * * 3818 0 0 A 27 2178 * * * * * * * * 4988 * 4745 * * * 2269 1466 2829 * * 27 0 * * * * * * 3818 0 0 L 28 * * * * * * * 1075 * 1216 5481 * * * * * * 3783 * * 28 0 * * * * * * 3818 0 0 A 29 525 4934 * * * 4607 * * * * * * * * * 2603 * 3902 * * 29 0 * * * * * * 3818 0 0 A 30 1348 * * * * 2923 4401 5682 * 5220 5544 5035 * 3222 * 2977 * 3387 * * 30 0 * * * * * * 3818 0 0 S 31 2058 * * * 4988 4261 * 2094 * * 4934 * * * 4524 2533 3148 3641 * * 31 0 * * * * * * 3818 0 0 L 32 * * * * * * * 2952 * 678 4401 * * * * 5220 4694 2910 * * 32 0 * * * * * * 3818 0 0 G 33 5319 * * * * 1205 * * 3924 * * 2257 * 4399 4893 2434 * * * * 33 0 * * * * * * 3818 0 0 V 34 * * 3924 914 * * * 3688 * 2752 3984 * * * * * * 3129 * * 34 0 * * * * * * 3818 0 0 E 35 4695 * 1647 1884 * * 5035 * * * * * 3551 3487 * 2958 4736 * * * 35 0 * * * * * * 3818 0 0 A 36 3383 5220 * 3169 * * * 4647 2953 * * 4578 3966 4893 2851 4097 2530 3516 * * 36 0 * * * * * * 3818 0 0 D 37 * * 1665 2816 5220 3918 * * 3971 * * * * 2579 3945 3342 5544 * * 4893 37 0 * * * * * * 3818 0 0 T 38 4580 * * * * * * 5544 * * 4932 4288 * * * 5682 297 5706 * * 38 0 * * * * * * 3818 0 0 L 39 * * * * * * * 842 * 1634 * * * * * * * 3059 * * 39 0 * * * * * * 3818 0 0 S 40 4524 * * 736 * * * 2366 5784 4578 * * * * * 4190 * 4399 * * 40 0 * * * * * * 3818 0 0 E 41 * * 1605 1884 4932 4993 4821 * * * * 2556 * * * 3362 4893 * * * 41 0 * * * * * * 3818 0 0 V 42 5090 * 4975 3159 4611 * * 2760 3002 * 5544 4578 * * * * 3515 1463 * * 42 0 * * * * * * 3818 0 0 Y 43 5294 * * * * * 5784 1283 * 5654 4578 * * * * * 4524 2332 * 2050 43 0 * * * * * * 3818 0 0 E 44 * * * 0 * * * * * * * * * * * * * * * * 44 0 * * * * * * 3818 0 0 P 45 * * * * * * * * * * * * 47 * * 4959 * * * * 45 0 * * * * * * 3818 0 0 Y 46 * * * * 1641 * * 4578 * 3322 * * 5035 * * * * * * 980 46 0 * * * * * * 3818 0 0 L 47 * * * * 4578 * * * * 111 4959 * * * * * * * * * 47 0 * * * * * * 3818 0 0 L 48 * * * * 5294 * * 1191 * 1484 3418 * * * * * * 3547 * * 48 0 * * * * * * 3818 0 0 Q 49 4287 * * 3924 * * * * 2490 4611 4993 * * 1567 2332 4988 * 4915 * 4975 49 0 * * * * * * 3818 0 0 A 50 3572 4526 * 3374 * * 4893 2453 3227 3017 3954 3435 * 3387 * 4515 * * * 4915 50 0 * * * * * * 3818 0 0 G 51 * * * 3684 4821 727 4893 * 4915 * * 2816 * 4975 4578 * * * * * 51 0 * * * * * * 3818 0 0 F 52 * * * * 1306 * * * * 1199 3658 * * * * * * * * 3626 52 0 * * * * * * 3818 0 0 L 53 * * * * * * * 784 * 1861 5481 * * * * * * 3037 * * 53 0 * * * * * * 3818 0 0 A 54 3706 * 5319 2317 * * * 3548 3836 * 5292 3092 * 2154 * 4983 3963 3665 * * 54 0 * * * * * * 3818 0 0 R 55 * * * * * * * * 1425 * * * * * 746 * * 4993 * * 55 0 * * * * * * 3818 0 0 T 56 * * 4524 * * 5793 * * * * * 4893 * * * 3530 289 * * * 56 0 * * * * * * 3818 0 0 P 57 3861 * 4524 * * 4578 * 3900 4934 4893 * * 1057 * 5283 2278 * * * * 57 0 * * * * * * 3818 0 0 R 58 4116 * * * * * * * 3621 * * 4983 * 4524 388 5515 * * * * 58 0 * * * * * * 3818 0 0 G 59 * * * * * 0 * * * * * * * * * * * * * * 59 0 * * * * * * 3818 0 0 R 60 * * * * * * * * * * * * * * 0 * * * * * 60 0 * * * * * * 3818 0 0 I 61 * * * * * * * 2529 2380 3688 3336 * * 3864 2585 * * 2167 * * 61 64 4524 * 0 * * * 3818 1000 0 V 62 1347 * * * * * * 1694 * 2172 * * * * * * * 3720 * * 62 0 * * * * * * 3818 0 0 T 63 * * * * * * * * * * * * * * * 4188 81 * * * 63 0 * * * * * * 3818 0 0 E 64 2669 * 3298 2998 * 5784 5319 3862 5035 5544 * 3974 3366 2938 4934 4591 4975 4188 * * 64 0 * * * * * * 3818 0 0 K 65 2686 * * 3343 5682 5292 * 5784 1329 3370 * 3949 * 4821 4791 5706 4934 * * * 65 0 * * * * * * 3818 0 0 A 66 1173 * * * * 979 * * * * * * * * * * 4345 * * * 66 0 * * * * * * 3818 0 0 Y 67 * 5768 * * 3964 * * 2791 3745 4348 * * * * 3229 * * 3585 3388 1459 67 0 * * * * * * 3818 0 0 K 68 4135 * 2826 2145 * 5493 * 4572 3024 * * 3941 * 4510 2380 4273 * * 4798 * 68 0 * * * * * * 3815 0 0 H 69 * * * * 3885 * 1242 * * * 5042 * * 4926 * * * * * 1164 69 0 * * * * * * 3793 0 0 L 70 * * * * 2945 * * 4229 * 340 5234 * * * * * * * * * 70 0 * * * * * * 3793 0 0 K 71 * * * 2198 * 1453 * * 1669 * * 3991 * * 4663 * * * * * 71 0 * * * * * * 3484 0 0 Y 72 * * * * 4750 * * 2709 * 2242 3743 * * * 1891 * * 3695 4594 2883 72 0 * * * * * * 2951 0 0 E 73 * * * 4499 * * * * 3226 * * 4045 1587 2955 * 2133 3343 * * * 73 0 * * * * * * 2705 0 0 V 74 4158 * * * * * * * * * 3342 * 1579 * * * * 1449 * 2792 74 0 * * * * * * 2594 0 0 P 75 * * * * * * * * * * * * 0 * * * * * * * 75 0 * * 0 * * * 2464 0 0 //