HHsearch 1.5 NAME d1in1a_ FAM FILE d1in1a_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1in1a_.a3m DATE Tue Mar 9 01:35:36 2010 LENG 88 match states, 88 columns in multiple alignment FILT 111 out of 148 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.0 EVD 0.4299 0.6773 SEQ >ss_dssp CCGGGTTTSTTCCCSSSTTCBCCCCTTSTTHHHHHHHHHHHTCBCCCTTCCTTCCCEESCCTTCTTSCEECHHHHHHHHHHTSCCCCC >sa_dssp EDBEEBBDEECCCECAAEDBDABABEEBEDCEEADEAADDBEBECDEDECAEEBCBABDEEEBBDEADCACCEBABCAAEEEECDECE >ss_pred CCCHHHHHHCCCCHHHHCCEEEEECCCCCCHHHHHHHHHHHCCEEEECCCCCCCEEEEECCCCCCCEEEECHHHHHHHHHCCCCCCCC >ss_conf 9632455420220144177099976889999999999998088785314767711999657787882798489999999759988999 >Consensus xxxdxxxxxxkxlxdiFxGvxixigxxxpxxxxLxrxiiaxGGxxxxxxxxxxvTHiIxxxxxxxxxxxVxPxWIxdcixxxkllPxx >d1in1a_ GSADETLCQTKVLLDIFTGVRLYLPPSTPDFSRLRRYFVAFDGDLVQEFDMTSATHVLGSRDKNPAAQQVSPEWIWACIRKRRLVAPC >UniRef50_Q9UBZ9(35-124:1251) DNA repair protein REV1 n=27 Tax=Tetrapoda RepID=REV1_HUMAN E=9e-13 s/c=0.83 id=24% cov=95% --SDAAMQKDGTSSTIFSGVAIYVnGYTDPSAEELRKLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIkelkgeKVIRPEWIVESIKAGRLL--- >UniRef50_A9VC06(531-617:628) Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9VC06_MONBE E=8e-08 s/c=0.67 id=25% cov=86% ----------ETLPDALTGLRILLYgfDDNQSFRAAKRLVYALNATV-EDYMSDNVTHVVSPQSWNADFDaarqdnanlvFVTPAWLQACMKQQQRVP-- >UniRef50_Q96WQ7(72-162:687) Strain CBS138 chromosome K complete sequence n=1 Tax=Candida glabrata RepID=Q96WQ7_CANGA E=0.0001 s/c=0.52 id=23% cov=81% ---------------IFNGMVFYLNRDSNAHDsiiiveQLKNLILLNGGDIVNKLpnkdSAEAKHIIVVSPYNNTELKTVTSTFIRACVQSNKLL--- >UniRef50_C1N4M8(288-377:479) Predicted protein n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1N4M8_9CHLO E=4e-12 s/c=0.80 id=25% cov=91% -ASDDKLCST-----LFKGSVFFIQRECPK-DMMIFVITSFGGDVAwdgegspHDASDGGITHVVADRPMDgkmaSNREYVVPQWVVDCANWRVLIP-- >UniRef50_D1ZZU6(452-549:556) Putative uncharacterized protein GLEAN_07398 n=1 Tax=Tribolium castaneum RepID=D1ZZU6_TRICA E=1e-05 s/c=0.52 id=25% cov=59% ---------------------------------LERYIIAYNGIVAENPS-EDVDYFITSennaenlKSYNSRAECLRPDWLWDCHNNKKFV--- >UniRef50_Q9UB07(413-501:614) DNA repair protein XRCC1 n=7 Tax=Sophophora RepID=Q9UB07_DROME E=4e-11 s/c=0.78 id=23% cov=93% ----DTAIQYRPLNQLLKGVVLVIsGIQNPDRADLRSKAVALGAKYKADW-GSGCTHLICAFKNTPKYnqvkgkgKIVTRSWIEKCYELKKYLP-- >UniRef50_Q01073(10-98:666) KLLA0D19294p n=1 Tax=Kluyveromyces lactis RepID=Q01073_KLULA E=5e-10 s/c=0.73 id=24% cov=90% -ALDSPSVQIKEDVGVFDGVSFFIDPLINDMEALGNAVRNNGGAVLIEAPEKSsreweAAYFVSKRYDEDYRIFVHPSYILDCI--------- >UniRef50_P52496(665-762:928) DNA ligase 4 n=5 Tax=Saccharomycetales RepID=DNLI4_CANAL E=4e-07 s/c=0.57 id=20% cov=90% ---ESKLKKVKVESDLFSGIEFLImsdkreaDGEVTTIEEMKAMVKQYGGKIVNSVDLATNYQImviterelpVSSQYLSKGIDLVKPIWIYECIKR--- ---- >UniRef50_C5G994(210-318:343) Putative uncharacterized protein n=2 Tax=Ajellomyces dermatitidis RepID=C5G994_AJEDR E=0.0006 s/c=0.42 id=24% cov=38% --------------------------------KLKQLLVSNGANVTFALARRTATHVILGRPNN------------------------ # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 1000 0 0 S 2 613 * * * * * * * * * * * * * * 1531 * * * * 2 0 * * * * * * 2154 0 0 A 3 1361 * * * * * * * * 2190 * * * * * 1353 * * * * 3 0 * * * * * * 2991 0 0 D 4 * * 339 2255 * * * * * * * * * * * * * * * * 4 0 * * * * * * 3762 0 0 E 5 2749 * 2416 2052 * 3446 * * * * * * * 4022 * 2242 4104 * * * 5 0 * * * * * * 4237 0 0 T 6 3821 * * 3740 * * * * 1959 * * * 2296 * * 3680 1977 * * 4022 6 0 * * * * * * 4237 0 0 L 7 2893 * * * * * * * * 1019 4041 * * * * 2595 3894 3672 * * 7 0 * * * * * * 4511 0 0 C 8 4167 2042 * * * * * 3571 2598 * * 3897 * 2714 * 2948 * 3277 * * 8 0 * * * * * * 4511 0 0 Q 9 4351 * * 1963 * * * * 2148 * * 4316 * 1986 4332 4339 3893 * * * 9 0 * * * * * * 4983 0 0 T 10 4412 * 3168 * * * * 3666 * * * 2637 * 4717 3744 4197 2060 2946 * 3934 10 69 * 4411 * * * * 5043 0 0 K 11 6118 * * 2376 * 4810 * * 712 * * * * 4105 3493 * * * * * 11 0 * * * * * 0 5155 0 1000 V 12 * * 3354 3354 * 4600 * * 3273 * * 4561 3536 4748 * 2966 2552 2355 * * 12 118 5017 4396 1000 1000 * 0 5155 1000 1000 L 13 * 5006 4448 4496 4704 5261 * 4903 4701 749 * * * * * 5239 5092 5413 4685 5104 13 0 * * * * * 0 5539 0 1644 L 14 * * * * * 5092 * * 5006 2916 * 4664 1194 * * 2069 7050 3561 * * 14 0 * * * * 946 1057 5539 0 1644 D 15 * * 876 3412 * 4316 * * 5954 * * 2661 * 5468 * 3311 6225 * * * 15 0 * * * * 0 * 6047 0 1000 I 16 5078 * * * 3921 * * 1172 * 1949 * * * * * * * 2929 * 3833 16 0 * * * * * * 6396 0 0 F 17 * * * * 165 * * * * 3208 * * * * * * * * * * 17 0 * * * * * * 6438 0 0 T 18 4052 * 4000 4038 * * 4399 * 3015 * 6201 4696 * 2978 3760 2055 2721 * * * 18 0 * * * * * * 6445 0 0 G 19 * * 5911 6120 * 326 * * 6421 * * 3866 4949 * * 4094 * * * * 19 0 * * * * * * 6445 0 0 V 20 * 2603 * * * * * 2984 4061 2389 3272 5920 * * * 6081 * 1629 * * 20 0 * * * * * * 6445 0 0 R 21 3803 5103 * 5336 6041 * 3980 4594 3686 * * 4892 * 7058 2584 2718 3674 2067 * * 21 24 5929 * 1000 1000 * * 6445 1000 0 L 22 4772 5661 * * 1639 * * 1767 * 3431 4658 * * * * * * 2348 * * 22 24 5896 * 1585 585 * * 6445 1000 0 Y 23 5260 * * * 1696 6325 3803 * * 3389 * * * 6130 * * 5676 3356 6416 1545 23 26 5795 * 0 * * * 6445 1000 0 L 24 * * * * 4925 5929 * 1510 * 1860 5896 * * * * * * 1702 * * 24 1099 1001 4912 559 1638 * * 6445 4417 0 P 25 4239 * 3421 4260 6375 1139 5261 * 5905 * * 5680 3495 4943 * 3715 * * * 3721 25 47 4970 * 656 1453 908 1098 6373 1590 1591 P 26 * * 3134 4478 3362 3631 4339 4481 4521 4815 * 6965 3555 * 2598 5056 * 5875 * 2438 26 0 * * * * * 0 6412 0 1000 S 27 5880 * 3031 2498 * 4315 * * 5418 5378 * 6358 * 3663 * 3065 1602 4447 * * 27 0 * * * * * 0 6415 0 1000 T 28 * 4820 3545 5162 4613 6119 6274 3316 4022 * 5998 2351 6032 5187 * 5088 3973 2055 * 4937 28 45 5026 * 1000 1000 0 * 6415 1582 1000 P 29 * * 6040 5091 * * * * 3679 * * 4119 713 4171 5591 3362 5459 6225 * * 29 168 4269 4102 1000 1000 * * 6304 2118 0 D 30 5754 * 2059 2579 6438 5860 * * 3560 5665 5987 5009 3565 5267 5841 2190 4415 * * * 30 46 6190 5814 0 * 328 2296 6617 1000 1815 F 31 2857 * 4585 * 5049 * 4250 4579 3735 5351 4964 4592 * * 1558 4721 5221 5331 4970 4024 31 0 * * * * 737 1322 6694 0 1360 S 32 3633 * 2958 2478 6925 4394 6002 * 5562 5081 5401 4800 5928 4302 2699 3399 3136 * * * 32 43 5788 6469 2585 263 * 0 6705 1000 1000 R 33 4119 * 3929 1787 5547 6319 * 4996 3883 4143 6297 6432 5738 3180 3562 6010 3439 5735 5610 6326 33 96 4401 5857 708 1366 733 1327 7000 2276 1340 L 34 4890 * * * * * * 3309 * 488 4700 * * * * * * 3825 6136 5107 34 29 * 5640 * * * 0 7006 0 1358 R 35 5832 * * 3353 * 4596 3564 3680 2271 6381 6466 6146 * 3663 1673 * * 4524 * * 35 0 * * * * 0 * 6959 0 1957 R 36 4978 6775 3492 4166 4298 * 5981 * 4201 5447 * 3679 * 3838 1251 3788 5059 * * * 36 0 * * * * * * 6972 0 0 Y 37 4210 6465 6820 5611 5286 5209 6609 3284 5564 1634 3551 * * 5647 6071 6547 6442 4100 * 2352 37 0 * * * * * * 6972 0 0 F 38 3554 * * * 3358 * * 1563 * 3252 2985 * 6458 * * * 5950 2184 * * 38 0 * * * * * * 6972 0 0 V 39 5338 * * 4913 * 7323 5604 2200 4560 2460 3760 * * * 4275 * 3195 2152 * 6176 39 0 * * * * * * 6972 0 0 A 40 1158 * * 4383 * 5947 * 5297 3620 3753 6784 5005 * 3931 5789 4067 4128 3918 * * 40 45 5019 * 2020 408 * * 6968 1522 0 F 41 * 5407 * * 2812 5566 1630 6219 * 4356 4312 3077 * 5884 6088 5968 * * * 2243 41 16 * 6496 * * * * 6962 0 0 D 42 5189 * 3113 * * 374 * * * * 6177 3975 * * * 6952 * * * * 42 0 * * * * * 0 6943 0 1000 G 43 2909 * * * * 206 * * * * * * * * * * * * * * 43 32 * 5500 * * * 0 7036 0 1000 D 44 4753 * 3288 4643 * 4169 6314 4642 2622 5205 6034 4772 * 3703 3406 3967 2281 5059 * * 44 48 * 4919 * * 505 1760 7025 0 1984 L 45 * 6039 * * 2246 * 5491 2554 * 3543 * * 5680 * * * 6536 1930 6457 2384 45 99 * 3910 * * 336 2268 7123 0 2184 V 46 2998 5173 * 5545 5562 * 3986 3926 5476 2481 4252 * * 4340 5227 3633 4692 2343 * 5107 46 30 6323 6971 2807 222 211 2875 7131 1000 3198 Q 47 4288 * 3584 3016 5634 4956 3243 5497 3995 6472 5509 3068 3481 3351 5560 5004 4022 7279 4696 * 47 46 6311 5723 2807 222 733 1327 7031 1000 1477 E 48 5425 * 2327 2633 5297 6438 4602 * 4365 5297 * 3193 * 4320 * 3486 5841 * * 2336 48 51 5568 6211 2722 237 833 1189 6371 1629 2411 F 49 3977 * 6609 6165 4469 4532 * 4168 * 2260 6088 4742 6026 * * 5714 * 3399 3982 1666 49 182 3594 4818 1485 638 404 2035 6507 3282 1737 D 50 5165 * 1567 3843 * 5164 * 5351 4986 * 3589 3100 5474 5710 5378 2604 5517 5555 * 6968 50 198 4158 3792 966 1035 475 1833 6911 2439 2552 M 51 3421 6734 2798 4505 * 4423 6868 6360 2474 4949 3819 * 4276 * 2888 3484 4176 5588 7214 * 51 52 4829 * 2940 201 282 2492 6847 1611 3328 T 52 4097 * 3853 2598 * 3673 6039 * 3481 5666 * 2996 5418 * 5298 2296 3349 5141 * * 52 21 * 6095 * * 0 * 7063 0 1000 S 53 3225 * 4173 4571 * 3406 5441 6108 3628 5683 7952 3892 4690 5244 3264 2061 3834 7332 * 7233 53 75 5024 5630 2093 385 0 * 6807 1497 1707 A 54 2324 3900 5925 * * * * 2684 3977 * * 5496 5617 * * 5701 3441 1540 * * 54 0 * * * * 0 * 6909 0 1308 T 55 5376 6133 5357 * * * 4569 * * * * 4813 * 4918 * 5015 370 * * 5527 55 0 * * * * * * 6925 0 0 H 56 * * * * 6285 * 456 3700 * 6396 * * * 4939 * * 5338 * * 3160 56 16 6526 * 0 * * * 6925 1000 0 V 57 6153 5949 * 6149 4389 * 5711 1781 * 2757 4684 * * 4424 * 6214 5691 1709 * 5278 57 32 5527 * 3170 170 * * 6925 1000 0 L 58 5974 * * 5338 * * * 891 * 3207 * * * * * * * 1680 * * 58 63 4548 * 3449 139 * * 6925 2232 0 G 59 1796 3044 * 5159 * 4489 * 5042 6057 7327 * 6316 * * 6304 3385 2415 2782 * 6279 59 58 4657 * 2513 278 * * 6411 2341 0 S 60 3436 6988 2538 3361 * 4968 * 5806 5223 * * 4365 5311 4489 4768 1787 3540 5456 * * 60 66 4483 * 2452 291 * * 6411 2346 0 R 61 5879 6849 4963 5194 3696 6445 4581 5881 3196 7919 * 2625 4557 3533 2026 4233 5000 6786 * 5364 61 86 4107 * 3118 177 * * 6380 2861 0 D 62 5833 * 4274 3580 * 5766 4642 5460 4174 1963 * 6545 2846 4967 * 3869 4266 3885 * 3571 62 38 5279 * 2370 310 * * 6381 1684 0 K 63 * 5262 4507 3645 5980 5994 * 5595 2877 4787 6648 3576 2791 6019 * 3697 3431 4307 2886 5956 63 42 5129 * 2726 236 * * 6381 2138 0 N 64 5769 * 2311 5500 6364 4534 4213 5720 3272 5237 6241 2166 3818 7131 * 3963 3484 6701 * 5461 64 210 2883 * 2793 225 * * 6379 3918 0 P 65 3648 * 4101 5334 5909 4080 * 6602 2450 4553 * 4669 2372 4983 3880 3284 3915 5355 * * 65 58 4676 * 3815 106 * * 6369 2149 0 A 66 5374 * 3027 4997 * 3540 4364 * 1407 * * 2637 5909 5012 5285 4717 5973 * * 5494 66 138 3453 * 2454 291 * * 6369 3155 0 A 67 2731 5550 * 5378 3563 5131 5978 3271 4886 2916 5899 6013 * 5932 3158 * 4824 3948 * 2794 67 174 3136 * 2644 252 * * 6369 3910 0 Q 68 * * 3205 3057 5901 * 4073 3662 1678 6768 * 5088 * 4636 3404 6909 3275 * * 5731 68 329 2294 * 3129 175 * * 6369 4652 0 Q 69 4928 5073 * * 2563 * 4534 2264 * 4002 * * * 4656 5312 * 5448 1972 * 3162 69 27 5778 * 3142 173 * * 6369 1706 0 V 70 5063 4989 * * * * * 2419 * 4257 * * * * * * * 516 * * 70 33 5487 * 2140 371 * * 6319 1661 0 S 71 * 5087 4547 * * * 3199 * 2760 6976 * 5734 * 2905 2174 2708 2980 6690 * * 71 0 * * * * * * 6319 0 0 P 72 3877 6811 6475 5887 * * * * 4533 5991 * * 489 * 5830 4630 5330 4624 * * 72 0 * * * * * * 6319 0 0 E 73 4210 5539 3474 2242 * 5336 * 5606 5372 * * 4246 * 1912 3524 3056 5153 * * * 73 0 * * * * * * 6319 0 0 W 74 * * * * 4566 * * * * * * * * * * * * * 193 3596 74 0 * * * * * * 6300 0 0 I 75 5970 * * * 4506 * * 909 * 2724 * * * * * * * 1965 * * 75 0 * * * * * * 6283 0 0 W 76 * * * 4888 2194 * 6523 5012 5834 3262 5779 * * 5181 5516 5888 3427 2792 3140 2749 76 0 * * * * * * 6283 0 0 A 77 3082 * 979 2341 * * * * 4633 6485 * 4731 * 5069 * 4544 6030 * * * 77 0 * * * * * * 6242 0 0 C 78 * 714 * * * * * * * * * * * * * 1357 * * * * 78 0 * * * * * * 6242 0 0 I 79 4640 6833 5121 6335 5477 * 4176 1145 * 3334 6423 5300 * * * 5530 * 2342 * 5328 79 0 * * * * * * 6246 0 0 R 80 3562 6170 * 2889 * * * * 1960 * * 2255 * 3823 2482 6369 5134 6691 * * 80 0 * * * * * * 6132 0 0 K 81 2036 * * 3085 6339 * * * 2604 4361 5247 4736 * 2889 3479 3198 * * 6037 * 81 0 * * * * * * 6124 0 0 R 82 5649 * * * * 1884 * * 2507 5290 * 2658 * 3285 2541 3741 * * * * 82 0 * * * * * * 5951 0 0 R 83 5572 * * 3645 6376 * * 5425 1236 5398 5051 5694 * 3235 2569 5649 5392 4393 * * 83 0 * * * * * * 5951 0 0 L 84 5437 6720 * * 4905 * * 2544 * 796 5017 * * * 3779 * * 3937 * 5824 84 0 * * * * * * 5739 0 0 V 85 * * * * * * * 5513 * 568 4388 * * 5686 5296 * * 2246 * * 85 0 * * * * * * 5602 0 0 A 86 5332 * 5723 4790 * * * * * * * * 143 * 6122 * * * * * 86 0 * * * * * * 4964 0 0 P 87 * * * * * * * * * * * * 0 * * * * * * * 87 0 * * * * * * 2554 0 0 C 88 * 0 * * * * * * * * * * * * * * * * * * 88 0 * * 0 * * * 1317 0 0 //