HHsearch 1.5 NAME d1ijda_ FAM FILE d1ijda_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1ijda_.a3m DATE Tue Mar 9 00:08:01 2010 LENG 45 match states, 45 columns in multiple alignment FILT 13 out of 17 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.3 EVD 0.5193 3.6926 SEQ >ss_dssp CCGGGGGTSCHHHHHHHHHHHHHHHHHHHHHHHHHSCSHHHHHTC >sa_dssp EEEEDDEECEDEEBDDEEEDDEDDEDEEEEDDDDEECEECDDEEE >ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHC >ss_conf 986089996600137899999999999999999502226677509 >Consensus NxxkiWlVVkPtvGiPlfLgavAvxsxxVHxxvlxxTtWxxxyxq >d1ijda_ NQGKIWTVVPPAFGLPLMLGAVAITALLVHAAVLTHTTWYAAFLQ >UniRef50_A5EGA6(2-46:127) Light harvesting protein B-800-850, alpha chain n=5 Tax=Bradyrhizobiaceae RepID=A5EGA6_BRASB E=1e-09 s/c=1.44 id=63% cov=102% NQGRIWCVVNPTVGLPLFLGSVALTSLCVHYTVLTHTTWMGAFFE >UniRef50_P77799(2-44:71) Light-harvesting protein B-800/850 alpha chain n=16 Tax=Proteobacteria RepID=LHA2_RHOGE E=3e-07 s/c=1.31 id=52% cov=98% NQGKVWRVVKPTVGVPVYLGAVAVTALILHGGLLAKTDWFGAY-- >UniRef50_B6B232(2-46:117) Light-harvesting protein B-800/850, alpha chain n=1 Tax=Rhodobacterales bacterium HTCC2083 RepID=B6B232_9RHOB E=2e-10 s/c=1.48 id=48% cov=102% NNAKMWLVVSPTVGAPLFLGAIAVGSFAVHLQVVKNTSWVADFLQ >UniRef50_Q3J144(3-46:54) Light-harvesting protein B-800/850 alpha chain n=18 Tax=cellular organisms RepID=LHA2_RHOS4 E=3e-06 s/c=1.20 id=53% cov=100% -NGKIWLVVKPTVGVPLFLSAAVIASVVIHAAVLTTTTWLPAYYQ >UniRef50_D2LJM3(7-49:67) Putative uncharacterized protein n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LJM3_RHOVA E=3e-05 s/c=1.15 id=50% cov=98% -QAAIWLYVRPSLGIPHFLGAVAIIALVVHLGVLGHTTLLKKYF- >UniRef50_C8RXU0(4-45:67) Antenna complex alpha/beta subunit n=1 Tax=Rhodobacter sp. SW2 RepID=C8RXU0_9RHOB E=0.0002 s/c=1.13 id=42% cov=96% --GKVWLVVKPTVGIPAFLAGVAIASVFVHVMLFNNTTWLAPYY- >UniRef50_P95655(2-45:63) Light-harvesting protein B-800/850 alpha chain n=1 Tax=Rhodovulum sulfidophilum RepID=LHA2_RHOSU E=7e-08 s/c=1.33 id=40% cov=100% NNAKMWLVVKPTVGIPLFLVACAIASFLVHLMLVLTTGWMGDYY- >UniRef50_Q07S39(2-45:59) Antenna complex, alpha/beta subunit n=8 Tax=Rhizobiales RepID=Q07S39_RHOP5 E=5e-07 s/c=1.27 id=57% cov=98% NQGSIWTVVKPTVGLPLLLGSVTVIAILVHLALLSNTTWFPKY-- >UniRef50_P07367(2-45:60) Light-harvesting protein B-800/850 alpha chain n=2 Tax=Proteobacteria RepID=LHA2_RHOCA E=2e-06 s/c=1.22 id=61% cov=98% NNAKIWTVVKPSTGIPLILGAVAVAALIVHAGLLTNTTWFANY-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * N 1 * * * * * * * * * * * 0 * * * * * * * * 1 0 * * * * * * 2094 0 0 Q 2 * * * * * * * * * * * 909 * 1097 * * * * * * 2 0 * * * * * * 2263 0 0 G 3 1180 * * * * 1031 * * * * * * * * * 3851 * * * * 3 0 * * * * * * 2318 0 0 K 4 3270 * * * * * * * 455 * * * * * 3530 3637 * * * * 4 0 * * * * * * 2318 0 0 I 5 * * * * * * * 840 * * 1887 * * * * * * 2547 * * 5 0 * * * * * * 2318 0 0 W 6 * * * * * * * * * * * * * * * * * * 0 * 6 0 * * * * * * 2318 0 0 T 7 * 3530 * * * * * * * 728 * * * * 3544 * 2158 * * * 7 0 * * * * * * 2318 0 0 V 8 * * * * * * * * * * * * * * * * * 158 * 3270 8 0 * * * * * * 2318 0 0 V 9 * * * * * * * * * * * * * * * * * 0 * * 9 0 * * * * * * 2318 0 0 P 10 * * * * * * * * 739 * * 3530 3709 * 3270 2899 * * * * 10 0 * * * * * * 2318 0 0 P 11 * * * * * * * * * * * * 0 * * * * * * * 11 0 * * * * * * 2318 0 0 A 12 3709 * * * * * * * * * * * * * * 2105 533 * * * 12 0 * * * * * * 2318 0 0 F 13 * * * * 3709 * * * * 3270 * * * * * * 3894 410 * * 13 0 * * * * * * 2318 0 0 G 14 * * * * * 0 * * * * * * * * * * * * * * 14 0 * * * * * * 2318 0 0 L 15 3784 * * * * * * 1598 * 2038 * * * * * * * 1499 * * 15 0 * * * * * * 2318 0 0 P 16 * * * * * * * * * * * * 0 * * * * * * * 16 0 * * * * * * 2318 0 0 L 17 3550 * * * * * 3270 * * 591 * * * * * * * 2764 * * 17 0 * * * * * * 2318 0 0 M 18 * * * * 535 * * 3894 * 3637 3709 * * * * * * * * 3544 18 0 * * * * * * 2318 0 0 L 19 * * * * * * * * * 0 * * * * * * * * * * 19 0 * * * * * * 2318 0 0 G 20 3550 * * * * 657 * * * * * * * * * 2795 4004 3757 * * 20 0 * * * * * * 2318 0 0 A 21 420 * * * * 3550 * * * * * * * * * 2582 * * * * 21 0 * * * * * * 2318 0 0 V 22 3740 3757 * * * * * 3784 * * * * * * * * * 361 * * 22 0 * * * * * * 2318 0 0 A 23 243 * * * * * * * * * * * * * * * 3637 3740 * * 23 0 * * * * * * 2318 0 0 I 24 * * * * * * * 1271 * 3530 * * * * * * * 1003 * * 24 0 * * * * * * 2318 0 0 T 25 1730 * * * * 1912 * 2442 * * * * * * * * 2007 * * * 25 0 * * * * * * 2318 0 0 A 26 1274 * * * * * * * * * * * * * * 770 * * * * 26 0 * * * * * * 2318 0 0 L 27 * * * * 1558 * * 3637 * 1253 * * * * * * * 2642 * * 27 0 * * * * * * 2318 0 0 L 28 1912 3530 * * 3550 * * 2708 * 2115 * * * * * * * 2486 * * 28 0 * * * * * * 2318 0 0 V 29 * * * * * * * 3740 * 3544 * * * * * * * 252 * * 29 0 * * * * * * 2318 0 0 H 30 * * * * * * 0 * * * * * * * * * * * * * 30 0 * * * * * * 2318 0 0 A 31 2194 * * * * 3544 * 3851 * 1597 * * * * * * * 2257 * 3530 31 0 * * * * * * 2318 0 0 A 32 1464 * * * * 1962 * * * * 2650 * * 3784 * 4004 3530 * * * 32 0 * * * * * * 2318 0 0 V 33 * * * * * * * * * 1348 * * * * * * * 720 * * 33 0 * * * * * * 2318 0 0 L 34 * * * * 3550 * * * * 381 * * * * * * * 2770 * * 34 0 * * * * * * 2318 0 0 T 35 3544 * * * * 3270 * * 3784 3757 * 3550 * * 4004 2243 1712 * * * 35 0 * * * * * * 2318 0 0 H 36 * * * * * * 1907 * 2689 * * 1219 * * * * 2749 * * * 36 0 * * * * * * 2318 0 0 T 37 * * * * * * * * * * * * * * * * 0 * * * 37 0 * * * * * * 2318 0 0 T 38 * * 3544 * * 3757 * * * * * 3851 * * * 2899 651 * * * 38 0 * * * * * * 2318 0 0 W 39 * * * * * * * * * 3270 * * * * * * * * 158 * 39 0 * * * * * * 2318 0 0 Y 40 * * * * 2099 * * * * 1616 2639 * * * * * * 2899 * 2778 40 0 * * * * * * 2318 0 0 A 41 1729 * * 3851 * 2021 * * 3270 * * * 2201 * * 4023 * * * * 41 0 * * * * * * 2318 0 0 A 42 1628 * 1850 * * * * * 2442 * * 3894 3550 4004 * * * * * * 42 0 * * * * * * 2318 0 0 F 43 * * * * 1476 * * * * * * * * * * * * * * 643 43 0 * * * * * * 2318 0 0 L 44 * * * * 1991 * * * * 1168 * * * * * * * * * 1722 44 0 * * * * * * 2210 0 0 Q 45 * * * 2044 * * * * * * * * * 401 * * * * * * 45 0 * * 0 * * * 1804 0 0 //