HHsearch 1.5 NAME d1id3b_ FAM FILE d1id3b_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1id3b_.a3m DATE Mon Mar 8 18:56:15 2010 LENG 79 match states, 79 columns in multiple alignment FILT 103 out of 221 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.3 EVD 0.3915 -0.6517 SEQ >ss_dssp CCGGGSCHHHHHHHHHHTTCCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCCCSSCC >sa_dssp EEDDEDDDDCBCEECDEEEDEECDEEDBDECBDECDDDDDDBDECBDEDBEEDEDEEDCECBDBDABEEDEEDDEEEDE >ss_pred CCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCC >ss_conf 9256510799999999621334349999999999999999999999999953689610799999999981887658798 >Consensus xxxxxIxKxxIxriaxxxGxxrIsxdaxxxixxxxxxxixxixxxaxxxxxhxxRkTitxxDVxxAlkrxgxxxYGfxg >d1id3b_ DNIQGITKPAIRRLARRGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFGG >UniRef50_B0ENK5(4-78:433) Transcription initiation factor tfiid, putative n=2 Tax=Entamoeba RepID=B0ENK5_ENTDI E=7e-07 s/c=0.73 id=21% cov=95% ---QKIPLDFIKSMLTANGFEEMSDEMINLISEEAENSISELFNEATKFMRHSKRKMLTIQDINSALKlKKLEPYYGY-- >UniRef50_Q6S7A2(2-73:504) TATA binding protein associated factor 6b isoform 1 (Fragment) n=9 Tax=Arabidopsis thaliana RepID=Q6S7A2_ARATH E=1e-12 s/c=1.03 id=24% cov=80% -----VTKESIEVIAQSIGLSTLSPDVSAALAPDVEYRVREVMQEAIKCMRHARRTTLMAHDVDSAL------------ >UniRef50_B2AUG9(396-463:529) Predicted CDS Pa_1_19080 n=2 Tax=Sordariales RepID=B2AUG9_PODAN E=2e-09 s/c=0.94 id=27% cov=85% ----GVVKRLAQNFAKTSGAKgRITPDAMNAIMQASEWFFEQLGEDLEAYSKHAGRNTINESDVITLMRRY--------- >UniRef50_D0N7M9(29-95:474) Putative uncharacterized protein n=1 Tax=Phytophthora infestans T30-4 RepID=D0N7M9_PHYIN E=2e-08 s/c=0.90 id=26% cov=86% ----------VRRFLLRAGFRSSSDRAAAEVRRHVSDFFRRIVGCMVVMMQHDGRRNFRLIDVKRACEHFGIRMYGY-- >UniRef50_B0E6J7(11-85:194) Putative uncharacterized protein n=2 Tax=Entamoeba RepID=B0E6J7_ENTDI E=1e-07 s/c=0.77 id=20% cov=96% ---RKILKIAAAQIAMSAGYTDAKESALETIADVMEMYIQEIGKKTHQISEHNGRTESSFIDLLFAMEQLGIDIFSFG- >UniRef50_UPI0001C41EE1(1-66:111) archaeal histone n=3 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C41EE1 E=9e-07 s/c=0.83 id=25% cov=85% ---MAIPKAPVKRIMKEEGAERVSAEAVDALVDYLETDADAIARKAIDYAKLAKRQTVKAEDIALAIGR---------- >UniRef50_A2F070(9-78:407) Putative uncharacterized protein n=1 Tax=Trichomonas vaginalis RepID=A2F070_TRIVA E=2e-06 s/c=0.77 id=20% cov=87% ---------TVKSIADQLGIKIKNDALAESLAQDAEYRVSKFIQPLVNYFENSADKYLTTDHINHILRVQaIPPIFGF-- >UniRef50_A5K5C2(920-997:1058) CCAAT-box DNA binding protein subunit B, putative n=1 Tax=Plasmodium vivax RepID=A5K5C2_PLAVI E=2e-13 s/c=0.98 id=20% cov=90% -NISRIMKRILPASA------KVAKESKDIIRECVTEFIQFLTSEvraASDRCLRERRKTISGEDILFSMEKLGfndyvEPLYEY-- >UniRef50_B5YNK4(1-68:116) Predicted protein (Fragment) n=1 Tax=Thalassiosira pseudonana CCMP1335 RepID=B5YNK4_THAPS E=0.0006 s/c=0.66 id=22% cov=76% ---------CIRRLLKNAlpKSTNVSKDSVAALSRACGIFVLYLTACCNDVAKDSRRTTISASDVMGALK----------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * D 1 * * 515 * * * * * * * * 1736 * * * * * * * * 1 0 * * * * * * 2663 0 0 N 2 * * * * * * * * * * * 617 * * * 2317 3993 3567 * * 2 0 * * * * * * 3424 0 0 I 3 3628 * * * * * * 398 * 3760 3530 * * * * * * * * * 3 0 * * * * * * 3546 0 0 Q 4 * * 4791 * * 4315 * 4277 3343 * 3954 3404 * 2828 2522 2176 * * * 3871 4 0 * * * * * * 4875 0 0 G 5 4133 * * * 4194 1032 * * 1831 * * * * * 3079 * * * * * 5 0 * * * * * * 5082 0 0 I 6 * * * * * * * 429 * 3861 3992 * * * * * * 2996 * * 6 63 4552 * 0 * * * 5829 1000 0 T 7 4812 * * * * * * 5418 3773 4624 3046 5043 2917 * * 2039 2024 4204 * * 7 0 * * * * * * 5871 0 0 K 8 5093 * * * * * * * 481 4066 * 4223 * * 3216 4899 * * * * 8 0 * * * * * * 5984 0 0 P 9 2102 * 3154 3425 * 4152 5339 4761 3514 3908 * 5133 3021 5295 4350 3978 * * * * 9 0 * * * * * * 6020 0 0 A 10 2242 4283 4329 * 4176 * * 4578 * 4055 * * 3407 * * 1984 2450 * * * 10 0 * * * * * * 6274 0 0 I 11 3682 * * * 5242 * * 835 * 3819 4790 * * * * * * 2132 * * 11 0 * * * * * * 6357 0 0 R 12 4442 * * 4248 * 5767 * * 1771 6059 5893 * 3155 3543 1664 * 4491 * * * 12 70 5123 5726 4322 74 * * 6357 1000 0 R 13 5777 * 5650 4989 * 5501 * * 3188 * * 5934 * 4294 899 3413 5869 3573 * * 13 0 * * * * * 0 6303 0 1000 L 14 * * * 5987 3183 * * 1320 * 1628 3694 6113 * * * 5777 * 4633 * * 14 25 5869 * 2000 415 * 0 6303 1000 1000 A 15 606 * * * 5851 * * 5313 * 2646 4100 * * * * * 4728 4490 * * 15 95 * 3966 * * * 0 6398 0 1000 R 16 * * 4789 2934 * * 5308 * 2238 4286 5054 5842 * 3510 1445 5881 5335 * * * 16 30 5626 * 2322 322 * 0 6295 1000 2022 R 17 5335 * * 4165 * 5500 5327 4832 3933 * * 4602 * 3348 1641 1941 4282 * * * 17 20 6201 * 1000 1000 * 0 6295 1000 2022 G 18 1812 5716 * 5722 5413 2059 4915 3816 5974 3402 5656 5355 * 5804 * 4131 * 3987 * 5908 18 84 4144 * 1000 1000 1870 461 6339 1746 2022 G 19 5658 * * * * 315 * * 5361 * * 6133 * 5042 * 4033 5421 5452 * * 19 0 * * * * * 0 6379 0 1774 V 20 2504 4980 5054 * 4217 6076 5771 2364 4420 4867 * 5894 * 5948 5447 3510 * 2140 * 5096 20 0 * * * * * 0 6391 0 1774 K 21 4025 * 3987 2946 * 4975 5733 3995 1990 * 5517 5483 * 6106 3504 3334 3336 5569 * 6092 21 73 4343 * 1386 696 0 * 6571 2028 1774 R 22 * * 4646 5856 5632 * * 4536 2359 * * 3813 6168 5454 933 4661 6238 * * * 22 0 * * * * * * 6754 0 0 I 23 4563 * * * * * * 1164 5111 3342 3503 * * * * 5175 * 1900 * * 23 0 * * * * * * 6805 0 0 S 24 2897 * 4720 6304 * 4836 * * 4444 * * 3708 6189 4307 * 880 4323 * * * 24 0 * * * * * * 6800 0 0 G 25 2687 6394 2319 3505 * 4160 6291 * 1933 * * 4717 4194 * 5229 3574 6588 * * * 25 0 * * * * * * 6800 0 0 L 26 4017 * 1308 2029 * 4934 * * 6074 6561 * 5860 * * 4689 3325 3727 * * * 26 0 * * * * * * 6800 0 0 I 27 1216 3854 * * 6270 6549 * 2842 * 4443 6016 * * * * 4031 4048 2697 * * 27 0 * * * * * * 6800 0 0 Y 28 3172 5531 * * 5813 * * 4756 2691 3623 4836 * * 5116 3316 4637 * 3156 * 1944 28 0 * * * * * * 6800 0 0 E 29 3403 6082 2198 1711 * 6315 * * 3626 6389 6210 4588 3870 3938 5311 5380 6335 6437 * * 29 0 * * * * * * 6858 0 0 E 30 2673 5761 4732 2271 6437 * 5996 3770 5224 2706 5380 * * * * 5140 2679 4006 * 5127 30 0 * * * * * * 6858 0 0 V 31 4196 * * * 4609 * * 1647 * 1699 4386 * * * * 5959 * 2368 * 5670 31 0 * * * * * * 6859 0 0 R 32 2484 6161 5600 4987 * * * 6253 5008 5268 4758 3702 * 2798 2104 3611 4493 3868 * * 32 0 * * * * * * 6859 0 0 A 33 4387 * 3471 1649 6316 * * 6424 3052 5168 6253 3976 5292 2930 3817 4952 4886 * * * 33 0 * * * * * * 6860 0 0 V 34 2640 2423 3396 3828 5475 * 5238 3791 6068 4837 5240 * * 5243 * 4559 6599 2709 * 4106 34 0 * * * * * * 6860 0 0 L 35 2737 3825 * * 5240 5312 * 3514 * 2080 4736 * * * * 3512 4487 2189 * 6084 35 0 * * * * * * 6860 0 0 K 36 * 4998 3548 1791 * 5547 * 4424 3060 5168 * 4082 * * 5123 2845 4006 3481 * * 36 0 * * * * * * 6875 0 0 S 37 4463 * 3254 1715 4769 * * 4251 3772 4273 5578 5507 * 4177 5720 5126 6169 4825 4636 3382 37 0 * * * * * * 7050 0 0 F 38 6036 * 6035 6421 1355 * * 5027 5653 4158 6511 * * * 1769 5672 * * 6555 2991 38 0 * * * * * * 6754 0 0 L 39 3898 * * * 3040 6548 * 1805 * 1853 5051 * * * * 5712 6199 2614 * 6456 39 0 * * * * * * 6643 0 0 E 40 4720 6723 5348 3121 * 4297 4209 5826 2589 3996 6721 5686 * 4215 2351 3124 3875 * * * 40 0 * * * * * * 6643 0 0 S 41 5602 5817 5245 2000 3605 * 4654 4436 3499 4439 3674 6415 * 3042 4151 4694 5790 5712 * 4676 41 0 * * * * * * 6643 0 0 V 42 4587 * * * 5215 * * 1248 * 2000 6145 * * * * * 6119 2108 * * 42 15 6590 * 1000 1000 * * 6643 1000 0 I 43 2280 5230 * * 6644 3763 * 2453 5964 3369 4798 * * * * 3305 2573 3589 * * 43 0 * * * * * * 6643 0 0 R 44 4636 5349 4888 3663 * 4118 6145 5977 3726 4806 6590 4312 * 2365 2603 2682 4781 * * 6382 44 0 * * * * * * 6643 0 0 D 45 5226 4347 1860 1998 6182 * * 6122 3527 6626 * 5018 5217 3220 3704 * 5523 6680 * * 45 11 7046 * 1585 585 * * 6650 1000 0 S 46 963 5101 * * * 5911 * 4412 * 2722 5185 * * * * 2760 5549 4429 * * 46 0 * * * * * * 6649 0 0 V 47 3037 4543 * 4545 * 5671 5549 3302 4284 4004 4826 2923 * 5079 * 2782 4177 2846 * * 47 32 5526 * 2322 322 * * 6649 1315 0 T 48 3646 * 3382 2659 * * * 3506 2339 4794 5246 4787 * 3848 4677 5767 3350 4145 * * 48 0 * * * * * * 6649 0 0 Y 49 4434 5070 * 5766 2283 6190 6654 2484 4697 3762 5187 * * * 5536 * * 3127 * 2172 49 15 * 6621 * * * * 6652 0 0 T 50 1806 2290 * * 5221 * * 6499 * 4337 2400 * 6176 6322 * 3664 3719 4644 * 6441 50 0 * * * * 0 * 6648 0 1000 E 51 5943 * 4259 2197 * * 5599 5181 2622 5763 6746 4303 4988 3288 2808 5058 3801 4441 * * 51 0 * * * * * * 6657 0 0 H 52 5239 5447 5841 4779 * 4922 1222 7111 3622 6254 5569 3773 * 5723 4722 3220 7523 7165 * 3997 52 13 6844 * 2322 322 * * 6657 1000 0 A 53 1931 6947 3563 2999 6468 2858 4905 * 5742 * * 4152 * 5977 5389 2268 6058 * * * 53 19 6232 * 1000 1000 * * 6655 1000 0 K 54 4550 * 5999 5101 * 2274 4678 * 1447 6035 * 3399 * 5770 3116 4407 6798 * * * 54 0 * * * * * * 6655 0 0 R 55 5895 * 5225 * * * 6037 * 3032 * * * * * 340 5107 * * * * 55 0 * * * * * * 6671 0 0 K 56 5511 * 5681 * * 6858 6244 * 829 * * 6862 6340 3790 3286 3921 3444 5632 * * 56 0 * * * * * * 6671 0 0 T 57 6760 * * 5553 * * * 5295 3858 5179 5114 5193 * 4700 4349 5107 676 5508 * 5225 57 0 * * * * * * 6671 0 0 V 58 * * * * 5193 * * 1372 5107 2148 4338 * * * * 5553 * 1939 * * 58 0 * * * * * * 6671 0 0 T 59 4683 * 4410 4342 * 6847 * * 3437 4910 4773 3236 * 6250 4410 2836 1457 * * 5423 59 0 * * * * * * 6671 0 0 S 60 2548 5514 6943 4090 3922 3215 6380 4903 6483 5193 6074 * 3362 * 4748 4489 2596 3145 * 6610 60 42 * 5107 * * * * 6671 0 0 L 61 5370 * 2386 1971 * * 6745 4298 4789 7011 * 4123 * 3088 4429 2765 4137 * * * 61 0 * * * * 0 * 6580 0 1000 D 62 * * 317 * * * 2815 * 5107 * * * * * * * 5258 * * * 62 16 6503 * 1585 585 * * 6671 1000 0 V 63 * * * * 5100 * * 1510 * 3238 6074 * * * * * * 1003 * * 63 0 * * * * * * 6671 0 0 V 64 5927 5672 3779 4445 7428 6795 * 2876 3382 2112 6288 2978 * 4782 6804 5856 5029 3113 6944 6593 64 0 * * * * * * 6625 0 0 Y 65 3948 7076 6184 4500 3061 6288 4224 * 3826 2842 5636 4362 * 4222 3459 4217 3751 5788 4873 3639 65 0 * * * * * * 6625 0 0 A 66 663 5266 * * * 5128 * 4571 * 3146 * * * * * 4268 5172 3661 * * 66 0 * * * * * * 6625 0 0 L 67 4454 5186 * * 4999 * * 3977 * 797 2450 * * * * 5264 6382 4819 * * 67 13 6815 * 0 * * * 6624 1000 0 K 68 4398 * 4691 2937 * 5883 6170 * 1683 * * 5145 * 2911 2269 3790 * * * * 68 172 3156 * 226 2787 * * 6677 2517 0 R 69 4333 * 5255 3926 * 5188 4967 * 3434 4805 * 4790 * 4535 1194 4298 5121 3986 6410 * 69 16 6525 * 0 * * * 6649 1000 0 Q 70 5421 * * * 3952 6522 * 4425 5343 1413 3395 3482 * 2744 5844 5389 6532 5595 * 4388 70 134 4026 5201 0 * * * 6605 1819 0 G 71 * * 4497 * * 626 * 4103 * 4767 * 3268 * 5631 * * * 3495 * * 71 149 3352 * 888 1122 0 * 6413 2552 1681 R 72 * * 6082 1821 4158 * 5485 2991 4469 2994 4600 4227 4352 4353 4134 4830 5511 * * 5582 72 23 6013 * 2322 322 * * 6300 1000 0 T 73 * 6042 4263 5623 * * * * 5224 5872 5603 4345 1158 4701 2922 3579 3371 * * * 73 0 * * * * * * 6063 0 0 L 74 4424 * * 5555 * * 5601 2362 * 1816 4072 5700 * 4890 * 4433 5557 2819 * 3168 74 49 4901 * 2000 415 * * 6063 1000 0 Y 75 * * * * 3178 * 4405 4147 * * * * * 5539 * * * * * 388 75 0 * * * * * * 5884 0 0 G 76 * * 4548 5017 * 246 * * * * * * 4928 * * 4314 * * * * 76 0 * * * * * * 5244 0 0 F 77 * * * * 725 * 4677 5147 * * * * * * * * * * * 1610 77 0 * * * * * * 5158 0 0 G 78 * * * 2320 * 641 * * 3635 * * 3679 * * * * * * * * 78 0 * * * * * * 3925 0 0 G 79 * * * * * 0 * * * * * * * * * * * * * * 79 0 * * 0 * * * 2929 0 0 //