HHsearch 1.5 NAME d1ibxb_ FAM FILE d1ibxb_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1ibxb_.a3m DATE Mon Mar 8 16:08:15 2010 LENG 89 match states, 89 columns in multiple alignment FILT 42 out of 46 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.8 EVD 0.4138 0.4719 SEQ >ss_dssp CCSCSSCCCCBCBCSSCCSBCCCCCSSHHHHHHHHHHHHTCSCTTSCCEEEETTTCCCCSSHHHHHHSCSSCBEEEECSSCCCCCCCCC >sa_dssp EEEEEEDCDADADCCDCEEDBCBCABDBECAEEDBCEEBECEDDEBEBDBBBEEECDEBEEDEEADEDEDEBDABBBBDDEEDEEEEEE >ss_pred CCCCCCCCCEEEEECCCCEEEEEEECCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEECHHHHHHCCCCCEEEEEECCCEECCCCCC >ss_conf 98767756069860888801879827889999999987286876543299990589484066798518898289999379543135789 >Consensus xxexxxxkPxKVxxxxRxxkxGVxAxSLxeLxxKxxxkLxixxxxxxxxivLexDGTeVddEeYFxtLpxnTxlmxLxxgexWxxxxsx >d1ibxb_ SGEIRTLKPCLLRRNYSREQHGVAASCLEDLRSKACDILAIDKSLTPVTLVLAEDGTIVDDDDYFLCLPSNTKFVALASNEKWAYNNSD >UniRef50_C3YR00(2-77:327) Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3YR00_BRAFL E=1e-22 s/c=1.41 id=33% cov=84% -------KPFKIRSADDSQKYGVAAQDLNDLIAKGCKVLKV--PIKGCKICLQQDGTLINSREFFQALPPLSVLVFLRKGEKW------ >UniRef50_A8DY77(72-151:549) Rep2, isoform B n=17 Tax=Endopterygota RepID=A8DY77_DROME E=5e-20 s/c=1.23 id=31% cov=91% --ESRGKRPLKIWDSWRNVRKGVVVGTFEELLVRGKDKLGV-PASEPVRVVLECDGTQIEDGEYFRTLANNTVLLLLRQGERW------ >UniRef50_Q9NDR2(36-112:450) Caspase-activated DNase n=27 Tax=Drosophila RepID=Q9NDR2_DROME E=1e-07 s/c=0.75 id=33% cov=75% ------MRGYKVTDNERTRKYGIGANSLEMLIAKAKSKF----PLLELHLYLASDGFEVSDDEYLKSLPAQTLFIV------------- >UniRef50_O76075(6-84:338) DNA fragmentation factor subunit beta n=34 Tax=Euteleostomi RepID=DFFB_HUMAN E=6e-07 s/c=0.70 id=32% cov=90% -------KSVKLRALRSPRKFGVAGRSCQEVLRKGC--LRFQLPERGSRLCLYEDGTEL-TEDYFPSVPDNAELVLLTLGQAWQGYVSD >UniRef50_Q9PZ05(2-67:111) ORF38 n=3 Tax=Betabaculovirus RepID=Q9PZ05_GVXN E=9e-07 s/c=0.83 id=33% cov=65% ----------------SEKQTGVMASSLADLRNAIRRTFNILEDVIPCL----ADGTRIENEEYYQSLAANERITYL------------ >UniRef50_P56198(36-118:239) Cell death activator CIDE-3 n=17 Tax=Tetrapoda RepID=CIDEC_MOUSE E=7e-24 s/c=1.34 id=39% cov=92% SRETPRARPCRVSTADRKVRKGIMAHSLEDLLNKVQDILKLKD--KPFSLVLEEDGTIVETEEYFQALAKDTMFMVLLKGQKW------ >UniRef50_UPI0001791FC6(2-86:188) PREDICTED: similar to cell death activator CIDE-B n=1 Tax=Acyrthosiphon pisum RepID=UPI0001791FC6 E=8e-22 s/c=1.22 id=35% cov=87% -------KPYKIIDSKREHKIGIVATSLSDFMTKAQQKLDINEN-EPIKVVLESDGTEIDEEDYFDTLETNTLIMILKSDQKWS----- >UniRef50_A5IZN7(97-163:185) Putative uncharacterized protein orf35 n=1 Tax=Spodoptera litura granulovirus RepID=A5IZN7_9BBAC E=2e-07 s/c=0.86 id=28% cov=65% -------KPVRV--YNDTIKVGILCYSLDDLKYKISTRFGMDKKDI---VVCLDDGTLIETEDYFKTVA-------------------- >UniRef50_O61464(10-85:299) DNAation factor DREP-1 n=13 Tax=Drosophila RepID=O61464_DROME E=2e-19 s/c=1.27 id=36% cov=84% -------KPFKVKDVTRNIKKAVCASSLEEIRSKVAEKFEKCDHLP--TIHLDSDGTEIDDEEYFRTLDENTELVAVFPGEHW------ # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 * * * * * * * * * * * * * * * 0 * * * * 1 0 * * * * * * 1505 0 0 G 2 * * * * * 966 * * * * * * * * 1035 * * * * * 2 0 * * * * * * 1505 0 0 E 3 * * * 0 * * * * * * * * * * * * * * * * 3 0 * * * * * * 2098 0 0 I 4 * * * * * * * 1837 * * * * * * * 1117 1948 * * * 4 0 * * * * * * 2098 0 0 R 5 * * * * * * * * * * * * 2278 * 333 * * * * * 5 0 * * * * * * 2344 0 0 T 6 * * * * * 1726 * * * * * * * * 1524 * 1515 * * * 6 0 * * * * * * 2506 0 0 L 7 3280 * * * * * * * 2531 1304 2750 * * * 3551 3555 * * * * 7 0 * * * * * * 3050 0 0 K 8 * * * * * * * * 970 * * * * 4811 1140 * * * * * 8 0 * * * * * * 4028 0 0 P 9 3937 * * * * 2971 * * * * * * 406 * * 4257 * * * * 9 0 * * * * * * 4028 0 0 C 10 * 2633 * * 1253 * 4563 * * 5114 * * * * * * * 2963 * 2186 10 0 * * * * * * 4028 0 0 L 11 * * * * * * * * 676 4831 * * * * 1698 * * 5032 * * 11 0 * * * * * * 4028 0 0 L 12 * * * * * * * 1682 * 3515 * * * * * * * 735 * * 12 89 * 4063 * * * * 4028 0 0 R 13 * 1743 * * * * * 4773 3907 * * * * 4862 2506 3176 2951 * 2759 * 13 0 * * * * 930 1074 3989 0 1532 R 14 4234 4288 1269 * * * * * * 4905 * 2753 * * 4803 2499 3534 * * * 14 0 * * * * 0 * 3993 0 1000 N 15 3489 4563 * * * 3383 2774 5061 * 4257 * 2874 3936 * * 3402 * 2766 5313 3720 15 0 * * * * * * 4028 0 0 Y 16 * * 2237 2943 5021 5032 * * 3429 * * 2392 * 5031 4257 3628 4013 5418 5114 4831 16 0 * * * * * * 4028 0 0 S 17 * * 3747 * * 5188 * * * * * * * * 508 2359 * * * * 17 0 * * * * * * 4102 0 0 R 18 5518 * * 2581 * 5461 * * 3310 * * 3227 4608 4009 3704 2116 2554 * * * 18 0 * * * * * * 4102 0 0 E 19 * 5140 5653 5354 * 5188 5033 2682 2874 * * 4689 * 4020 2485 5273 3032 2737 * * 19 0 * * * * * * 4102 0 0 Q 20 * 5428 * * * * * * 1045 * * * * 3747 1361 * 5140 * * * 20 30 5592 * 0 * * * 4102 1000 0 H 21 * * * * 4608 * 4496 3490 1305 * * * * * 4195 * 4320 3427 * 2162 21 0 * * * * * * 4102 0 0 G 22 3807 4739 * * * 212 * * * * * * * * * 5177 * * * * 22 0 * * * * * * 4138 0 0 V 23 * * * * 5108 * * 1754 * 3059 * * * * * * * 851 * * 23 0 * * * * * * 4138 0 0 A 24 1984 5144 * * * 3798 * 5518 * 4116 3176 * * * * * 2126 2135 * * 24 0 * * * * * * 4138 0 0 A 25 292 3649 * * * 4659 * * * * * * * * * * * 3966 * * 25 0 * * * * * * 4138 0 0 S 26 3857 * 3914 4289 * 2896 5683 * 4808 * 5826 4357 * 4747 3364 1986 3045 * * 4333 26 0 * * * * * * 4138 0 0 C 27 * 4076 4089 * * * * * * * * 4026 * * * 598 2644 * * * 27 0 * * * * * * 4138 0 0 L 28 * 4659 * * 4368 * * * * 278 * * * * 4283 * * 4808 * * 28 0 * * * * * * 4138 0 0 E 29 3334 * 2954 1811 * * 4119 * 3218 * * 4747 * 3130 4348 3385 * 5295 * * 29 0 * * * * * * 4138 0 0 D 30 * * 1733 821 * * * * * * 3949 * * 4608 * * * 5194 * * 30 0 * * * * * * 4138 0 0 L 31 * * * * 5131 * * 5144 * 222 5295 * * * * * * 4055 * * 31 0 * * * * * * 4138 0 0 R 32 * * * 5177 * * * 2510 2684 1993 5131 * * * 1693 * * 4264 * * 32 0 * * * * * * 4138 0 0 S 33 2736 * 3384 2872 * * * 3535 5537 5674 5515 3884 * 5518 3918 2800 3109 5445 * 5057 33 0 * * * * * * 4138 0 0 K 34 4372 * * * * * * 5749 359 * * * * 5108 3006 * * * * * 34 0 * * * * * * 4138 0 0 A 35 1526 * * * * 1529 * 3675 * * * * * * * 5284 5421 2483 * * 35 0 * * * * * * 4138 0 0 C 36 2489 1899 * * * 5594 * * 3357 3743 5173 5194 5826 4380 2831 3329 * * * * 36 58 * 4659 * * * * 4138 0 0 D 37 3910 * 2818 2017 * 5724 5471 5503 2765 5411 * 4409 * 3270 4343 4282 4919 5262 * * 37 0 * * * * * 0 4071 0 1000 I 38 2872 * * * * * 4970 4541 1061 4645 * * * * 4261 3780 3239 4699 * * 38 0 * * * * 0 * 4071 0 1000 L 39 * * * * 1793 * * * * 491 * * * * * * * * * * 39 72 * 4357 * * * * 4138 0 0 A 40 5468 * 5098 4215 5153 2470 * * 2789 3435 4038 2058 * * 4640 3899 * 4628 * * 40 33 * 5457 * * * 0 4028 0 1134 I 41 * * * * 3133 * * 1683 4944 1767 4323 * * * 5203 * * 2916 * 4696 41 264 * 2583 * * * 0 4030 0 1581 D 42 2143 3077 3412 * * * * * 3982 4303 * 3173 3199 4391 * 2731 * 5105 * * 42 0 * * * * 1027 974 3967 0 2869 K 43 * 4892 3195 2805 * 3541 * * 3485 3182 * 3977 2267 5328 4205 5413 5382 5026 * * 43 181 * 3084 * * 294 2441 4021 0 2155 S 44 4464 * 2566 4906 * 4321 4995 * 4932 * 5469 3467 2106 5017 5300 2592 * 3818 * * 44 383 * 2100 * * * 0 4034 0 2128 L 45 3086 4733 4575 2906 4348 * * 4090 * 2186 4645 * * * 4729 3284 * 2633 * * 45 228 * 2776 * * 941 1061 3971 0 3147 T 46 3181 * 4470 1960 * * * 3351 3290 3466 * * 4740 4897 4321 3537 4133 4938 * * 46 327 * 2300 * * * 0 3970 0 2774 P 47 4624 * 3483 4860 * 2592 * * 4584 * * 3145 1224 * 4487 4567 * * * * 47 65 * 4496 * * 527 1709 3792 0 3372 V 48 4710 2291 * * 4234 * * 3095 * 1973 * * * * * 4349 * 1819 * * 48 42 * 5132 * * 686 1402 4014 0 2542 T 49 * * * * 5623 4933 4260 * 2886 4266 * 5543 * * 1942 2649 2034 5495 * * 49 77 * 4266 * * 597 1562 4051 0 1819 L 50 * * * * * * * 1821 * 1167 * * * * * * * 1880 * * 50 0 * * * * 976 1024 3975 0 1569 V 51 * 3119 * * 3641 * 3778 * * * * * * * * * 5484 707 * 3368 51 0 * * * * * 0 4029 0 1000 L 52 5381 3340 * * * * * * * 233 * * * * * * * 5238 * * 52 0 * * * * * 0 4029 0 1000 A 53 2589 * 3778 833 * * * * * 3569 * * * 4715 * * * * * 3699 53 40 * 5186 * * 0 * 4029 0 1000 E 54 4407 4398 3501 1508 * * * 4650 * * * 3571 * 2976 * 2432 5097 * * * 54 0 * * * * 0 * 4058 0 1000 D 55 * * 0 * * * * * * * * * * * * * * * * * 55 0 * * * * * * 4077 0 0 G 56 * * * * * 0 * * * * * * * * * * * * * * 56 0 * * * * * * 4077 0 0 T 57 * * * * 4304 * * * * * * * * * * 5202 188 4492 * * 57 0 * * * * * * 4077 0 0 I 58 5906 * 7227 1064 * * * 3147 * 3945 5786 * * 3215 4423 6741 4815 3278 * * 58 0 * * * * * * 4077 0 0 V 59 * * * * 4803 * * 2019 * 3932 * * * * * * * 617 * * 59 153 * 3314 * * * * 4077 0 0 D 60 4813 * 1219 1466 * * * * * 5337 * 4510 * * 5375 4168 5352 * * * 60 0 * * * * 0 * 3938 0 1844 D 61 * * 873 5191 * * * * * * * 4423 * * 5163 2659 2368 * * * 61 0 * * * * * * 4077 0 0 D 62 * * 2602 484 * 5417 * * * * * 4982 5124 * 4780 * * * * * 62 0 * * * * * * 4077 0 0 D 63 3913 * 1305 1204 * * * * 4159 * * 4685 * * * * * * * * 63 0 * * * * * * 4077 0 0 Y 64 * * * * 1932 * * * * * * * * * * * * * * 439 64 0 * * * * * * 4077 0 0 F 65 * * * * 301 * * * * 2821 * * * * * * * * * 4423 65 0 * * * * * * 4077 0 0 L 66 4438 * 4876 5163 * * 4803 5558 3224 4117 3676 5132 4733 1627 3101 3547 * * * * 66 0 * * * * * * 4077 0 0 C 67 3250 3486 * * 4238 * * * * 4289 * 5328 * * 4685 2440 1141 * * * 67 0 * * * * * * 4077 0 0 L 68 4685 * * * * * * 4982 * 212 * * * * * * * 3918 * * 68 0 * * * * * * 4077 0 0 P 69 2776 * 4432 1957 * 5512 * * * * * * 921 * * * * * * * 69 0 * * * * * * 4077 0 0 S 70 2212 * 1949 4685 * 5637 * * 4556 * * 4224 2420 * 4089 3906 4111 * * * 70 0 * * * * * * 3969 0 0 N 71 * * 2664 * * 5157 4817 * * 4753 * 1077 * 1901 * * * * * * 71 0 * * * * * * 3969 0 0 T 72 3569 * * 4358 * * * 5508 * * * * * * * 3941 401 5481 * * 72 0 * * * * * * 3969 0 0 K 73 5418 4288 * 2746 * * 5512 5041 3432 2736 5710 * 5037 * 4358 4679 3547 1953 * * 73 0 * * * * * * 3969 0 0 F 74 * * * * 1535 * * 3715 * 1031 * * * * * * * 3484 * * 74 0 * * * * * * 3969 0 0 V 75 * * * * * * * 2425 * 3438 1345 * * 4985 * * 4358 2015 * * 75 0 * * * * * * 3969 0 0 A 76 3446 5527 * * 3507 * * 3126 * 1838 4689 * * * * * * 1658 * 4358 76 0 * * * * * * 3969 0 0 L 77 * * * * * * * * * 300 * * * * 4762 * * 3080 * 4929 77 0 * * * * * * 3968 0 0 A 78 5476 * 4460 2262 3541 * 5447 5168 4901 5443 * * * 2712 2421 4688 3315 5213 * 5323 78 0 * * * * * * 3779 0 0 S 79 4460 * 5213 3861 * 3829 * * 2155 3639 * 3972 1845 5160 4688 3742 * * * * 79 0 * * * * * * 3779 0 0 N 80 * * 2917 4800 * 696 * * * * * 2541 * * * 4562 * * * * 80 0 * * * * * * 3779 0 0 E 81 * * 4685 1028 * * * * 5476 * * * * 1249 * 5180 * * * * 81 0 * * * * * * 3779 0 0 K 82 4548 * 6426 3951 * * 4902 3785 1130 * * * * 4186 5135 3241 4280 4621 * 4771 82 0 * * * * * * 3745 0 0 W 83 * * * * * * * * * * * * * * * * * * 0 * 83 0 * * * * * * 3754 0 0 A 84 2491 * * * * * * * * * 2898 * * 3141 * 1587 3339 2808 * * 84 0 * * * * * * 3077 0 0 Y 85 3493 * * * * 2771 2643 * * * * * 1413 * * 3051 * * * 3206 85 0 * * * * * * 2930 0 0 N 86 3493 * * * * * * * 3051 * * 2285 * * 3520 2643 2384 * * 2771 86 0 * * * * * * 2930 0 0 N 87 * * * * * 3100 2493 * * * * 1979 * * 2389 * 3215 2703 * * 87 0 * * * * * * 2821 0 0 S 88 * * * * * * * * * 2651 * * * * * 250 * * * * 88 0 * * * * * * 2378 0 0 D 89 * * 451 * * * * * * * * 1898 * * * * * * * * 89 0 * * 0 * * * 2099 0 0 //