HHsearch 1.5 NAME d1ib8a1 FAM FILE d1ib8a1 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1ib8a1.a3m DATE Mon Mar 8 17:07:19 2010 LENG 74 match states, 74 columns in multiple alignment FILT 106 out of 223 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.5 EVD 0.4263 -0.5439 SEQ >ss_dssp CCCSSHHHHHHHCSEEEEEECSSCSSSCSEEEEEEEEEETTEEEEEEECSSCEEEEEECSSCCSSCEEECSCCC >sa_dssp EEAEECECADEBEEDBACABBEEDCDECEEBDACAEDCEEEDADACBCCEEEDDECEACDEEDDECEDCEDEEE >ss_pred CCCCCHHHHHHHCCCEEEEEEECCCCCCEEEEEEEEEECCCEEEEEEECCCCCCEEEEEHHHCCEEEEEEEECC >ss_conf 97669889998579889999943237851899999972298699999357764079981883017789999719 >Consensus RpLxxxxdfxrxxGxxVxvxlxxpixgxkxfxGxLxxxxexxixlxxxxxxxxxxixipxxxIxkArLxvelxx >d1ib8a1 RPLKTKDAVAGAVGKYIHVGLYQAIDKQKVFEGTLLAFEEDELTMEYMDKTRKKTVQIPYSLVSKARLAVKLLE >UniRef50_D2MK27(84-156:157) Putative uncharacterized protein n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MK27_9BACT E=0.0005 s/c=0.63 id=21% cov=97% RPLKRRKDYDQAVGRTIRVKVHAPVQGKGTVVGQLAEVDDQGITLQVPVRKSRtpRRVALEWDAIAHAKLEIE--- >UniRef50_A6NTX5(84-151:151) Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NTX5_9BACE E=2e-09 s/c=0.94 id=25% cov=93% RVLRHPEHFDAFLGAEVEVRLYRPVEGRKDHVGLLKAYDNGDVTVTLPSG----DVTFPKKDVAQVRLYVRV-- >UniRef50_Q2SSE2(91-163:164) Ribosome maturation factor rimP n=3 Tax=Mycoplasma mycoides group RepID=RIMP_MYCCT E=4e-08 s/c=0.82 id=24% cov=97% KQIRSQEELIKALDQWVYVQLNNEIKKVKEFEGYVTKYNNDtnTFSFLFFIKGQKKTLEVMWNNIKFIRYAVR--- >UniRef50_Q0AYJ1(72-136:139) Ribosome maturation factor rimP n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=RIMP_SYNWW E=0.0001 s/c=0.73 id=18% cov=88% RVLKKERDWERFSGYRVRIKTRKSFPGPQRITGILLGFDSENIAVELEGE----LLKVPREMITIIRL------ >UniRef50_Q1GCH5(91-160:203) Ribosome maturation factor rimP n=5 Tax=Rhodobacterales RepID=RIMP_SILST E=0.0002 s/c=0.67 id=23% cov=93% RPLTRLKDFDMFEGYEAKLETADLIDGRRRFKGELAGIEDDEVLINIEEHGETVTIGLKFDWLSDAKL------ >UniRef50_Q1IIT1(84-169:169) Ribosome maturation factor rimP n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=RIMP_ACIBL E=2e-09 s/c=0.74 id=23% cov=99% RKISKPADFERFTGSLVKVSTREPLDGNRHFEGRLESFADGKLTIDLNAVPQrgqkkqkgpkapvvERKVEIALADVEKANLVPEI-- >UniRef50_Q6MMS8(91-167:174) Ribosome maturation factor rimP n=1 Tax=Bdellovibrio bacteriovorus RepID=RIMP_BDEBA E=5e-07 s/c=0.72 id=26% cov=88% RHLKKPWHFKKAIGKKVYIKTTKALEsvgvedkkwkNAKTVEEVLESADEQGVRFVVKDV----EIKIPYAMIDRAKL------ >UniRef50_Q6A7M3(88-166:178) Ribosome maturation factor rimP n=2 Tax=Propionibacterium acnes RepID=RIMP_PROAC E=9e-07 s/c=0.69 id=24% cov=97% -PLTQPRHYRRNIGHLVRFTLNPAEEQKsgETFDGRIAEAGEEVVTLEVEAENSKPhkpvytTREVQLADVAKAVVQVEL-- >UniRef50_Q30WJ2(87-164:173) Ribosome maturation factor rimP n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=RIMP_DESDG E=1e-08 s/c=0.78 id=23% cov=93% RPLFSAAQLAAYKGHKAELVLRAPcaqFPGRKKFTGVVGNVEGENFTLQIDplkgGDNLQEELSAHWDDVKKARL------ # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * R 1 * * * * * * * * 4932 * * * * * 48 * * * * * 1 0 * * * * * * 6647 0 0 P 2 6845 * * 3616 6489 * 6635 5058 3422 5919 * * 835 5181 4900 5465 6396 3435 * * 2 0 * * * * * * 6641 0 0 L 3 * * * * 5301 * * 3418 * 201 6510 * * * * * * * * * 3 0 * * * * * * 6668 0 0 K 4 6185 * * * 2635 * 5923 6181 1626 * 6689 * * 6484 2556 4832 2487 4438 * 5601 4 0 * * * * * * 6668 0 0 T 5 6166 * 5739 4551 * 6263 4947 5445 1773 6745 5691 4801 * 4705 2788 2762 2568 * * * 5 0 * * * * * * 6668 0 0 K 6 3745 * 2916 3283 6586 * 6447 4792 3131 2854 * 5703 2015 5868 5667 * * 4460 5773 6300 6 0 * * * * * * 6698 0 0 D 7 2934 * 3772 1795 * 4115 * * 2725 * * 5776 * 5365 2783 3543 * * 5307 * 7 0 * * * * * * 6722 0 0 A 8 5693 * 1238 3665 * * 1829 * * * * 5493 * 2683 * 6683 6825 * * * 8 0 * * * * * * 6722 0 0 V 9 * 5816 * * 1202 * * 5557 * 2723 4793 * * * * * * 6730 3552 2034 9 0 * * * * * * 6722 0 0 A 10 3217 * 3710 2517 6295 * 5102 4095 3337 4096 5281 5713 * 4123 2649 5395 5589 3694 * * 10 0 * * * * * * 6722 0 0 G 11 3131 * 4524 7307 6907 5296 5637 6167 2967 5070 6578 5195 * 4471 1105 * 6670 6696 4870 6741 11 0 * * * * * * 6722 0 0 A 12 2515 5776 * * 1341 * 4409 * * 7405 * 3500 * 5452 * 4330 * 5082 5009 2862 12 0 * * * * * * 6722 0 0 V 13 3525 * * 5151 * * 5738 1933 3674 2868 * * * 4935 3823 4666 4823 2311 * 6722 13 0 * * * * * * 6722 0 0 G 14 * * 5120 5670 * 200 6437 * 5786 * * 4572 * * * * 6778 * * * 14 0 * * * * * * 6731 0 0 K 15 4443 6311 6705 2540 5011 4980 4000 * 2348 * * 5343 * 3125 2493 4354 * * * 3785 15 0 * * * * * * 6731 0 0 Y 16 * * 4892 2846 5042 * 6399 6980 2651 2490 5868 4624 4147 4544 4006 6885 3209 5922 5219 4042 16 0 * * * * * * 6731 0 0 I 17 2295 6704 * * * * * 2358 * 6449 5719 * * * * * 6689 859 * * 17 0 * * * * * * 6731 0 0 H 18 6172 6854 4830 3252 5817 * 3547 6487 1833 4670 6992 6839 * 4573 2687 4399 4226 5314 * 3985 18 0 * * * * * * 6731 0 0 V 19 4733 5819 * * 5396 * * 1747 * 2580 * * * * * * * 1134 * * 19 31 * 5552 * * * * 6731 0 0 G 20 5166 * 6414 3378 7411 5329 5709 5023 1713 5602 * 4846 * 4708 2501 4736 3164 4313 * 6814 20 11 * 7092 * * 0 * 6718 0 1608 L 21 5727 5756 6195 * 3712 * * 5531 * 897 5430 * * * * 6054 2134 5104 * 5713 21 24 * 5900 * * * 0 6731 0 1000 Y 22 4423 * 6494 4631 3316 5797 4274 4996 2731 5820 * 3518 * 4781 2984 4215 4668 4285 6124 3020 22 59 * 4640 * * * 0 6718 0 1859 Q 23 2782 * 4828 2465 5130 3654 * 6705 3759 6898 5039 3879 5545 3655 3819 3836 4967 4138 6693 * 23 100 6052 4269 2000 415 * 0 6708 1000 3232 A 24 2433 * * 4061 * * * 6136 3185 3880 6382 6751 1071 5815 * 4775 6460 * * * 24 50 5285 6902 781 1259 3438 140 6659 1797 3708 I 25 6081 * 4758 4464 3410 6355 6154 1743 4452 2795 5865 * * 6853 5243 * 5405 2342 * 5570 25 26 5822 * 1011 989 2385 307 6662 1566 3725 D 26 3009 * 1982 2436 * 4045 5728 * 5061 * 5702 2468 5655 4197 6208 5208 6213 * * * 26 57 4696 * 2281 332 2432 296 6676 2310 3390 K 27 * * 3830 5078 * 686 6392 * 3601 * * 2877 * 5465 * * 5311 * * * 27 0 * * * * 411 2013 6696 0 3268 Q 28 4703 * * 4251 * 3464 6291 4551 2711 5103 6318 4589 6806 3413 1667 3997 * 4413 * * 28 16 6466 * 1000 1000 * 0 6736 1000 1422 K 29 5545 6318 6373 4016 * 4712 * * 1287 6617 * 7171 5538 5248 1776 4676 5070 5774 * * 29 0 * * * * 0 * 6736 0 1422 V 30 7001 * 5141 2575 6665 * 7024 * 2364 5702 * 3101 6449 4743 3009 4634 3261 3187 * 5564 30 0 * * * * * * 6731 0 0 F 31 6402 * * 5443 1152 * 5416 3055 * 3106 * * * * * * * 2931 4469 3659 31 0 * * * * * * 6731 0 0 E 32 5804 * 4755 2350 6470 * 5694 4134 3018 4398 * 5518 * 3723 3505 4347 2394 4082 * 7308 32 0 * * * * * * 6731 0 0 G 33 4390 * * 5552 * 103 * * * * * * * * * * * * * * 33 0 * * * * * * 6731 0 0 T 34 6301 * * 3283 * * 6449 2359 2893 4088 7045 6379 * 5148 2888 * 3338 2823 * 4019 34 0 * * * * * * 6731 0 0 L 35 * * * * 5719 * * 2078 * 757 5820 * * * * * * 2892 * * 35 0 * * * * * * 6730 0 0 L 36 3729 * 5128 3560 * 3832 6746 3612 2980 2529 * 6439 * 4292 5186 3741 3772 3160 * * 36 0 * * * * * * 6730 0 0 A 37 3163 6471 3502 3174 * 2629 * * 4502 6173 5788 3866 6602 6887 4680 1809 6877 5648 * * 37 0 * * * * * * 6730 0 0 F 38 2822 6325 * 6021 2597 * 6755 4239 7044 3584 6867 * 5785 * 4454 4878 4745 1664 * 4239 38 11 7003 * 0 * * * 6730 1000 0 E 39 4701 * 1455 2679 * 3766 6205 * 5421 5426 * 3362 7147 5257 5430 4190 4010 4780 * * 39 81 4198 * 731 1331 * * 6730 2718 0 E 40 4331 * 1726 1542 * 3341 5813 * 4836 * 7086 3746 6436 5015 6682 6843 * 6612 * * 40 27 5737 * 1294 756 * * 6718 1626 0 D 41 4200 * 2004 1983 * 2969 5867 * 6016 6422 * 3967 * 3469 * 4762 3873 6383 * * 41 82 4799 5691 1327 733 * * 6718 1849 0 E 42 5632 6585 4120 3535 * 2639 5161 5927 3693 6848 4485 3142 * 4326 4750 3592 2848 4108 6647 * 42 16 * 6540 * * * 0 6707 0 1620 L 43 3788 * * 5788 3611 5292 * 1555 7053 2556 6653 5629 * * * * * 1977 * * 43 20 6176 * 3000 193 * 0 6699 1000 2102 T 44 5085 6087 6174 4328 4766 * * 3675 4478 3833 * 7455 6754 5234 3365 3801 1519 3598 * 5637 44 0 * * * * 1645 556 6699 0 2102 M 45 * * * 6326 4353 * * 1846 6284 1220 4986 * * * * * * 2421 * * 45 40 * 5206 * * 0 * 6708 0 1662 E 46 4052 5582 3385 2100 * * 6618 4172 4974 3882 * 3681 * 4383 4633 3325 3333 4076 * * 46 210 * 2884 * * * 0 6714 0 2089 Y 47 6395 4753 * * 3936 * * 2534 4965 2085 * 6670 6287 4946 * 6131 7088 1826 * 3531 47 108 4774 4806 1990 418 3948 97 6656 1846 4431 M 48 4918 * 2350 2428 3900 6011 6012 6547 4568 5759 5190 4713 4578 3588 4306 4417 3829 4123 * * 48 35 6445 6291 2000 415 1768 502 6627 1000 4627 D 49 4306 * 2241 3517 * 2274 * 3820 4597 3982 * 3171 5027 5300 5123 6725 * 3983 * * 49 209 4416 3507 1802 488 1532 612 6653 2454 4429 K 50 3757 * 2900 2482 * 2993 5353 5566 1928 6664 * 6397 4981 6523 5510 5811 6408 3981 * * 50 157 7767 3344 3585 126 1635 561 6602 1000 4820 T 51 3604 * 3669 2953 * 2329 5106 6385 4330 6141 6099 3472 4539 4734 6305 4898 2728 5402 * * 51 216 * 2843 * * 1876 459 6590 0 4703 R 52 3452 * 4724 3151 * 3323 * 6395 2464 4722 * 3910 5217 3303 4158 3367 5042 4345 * * 52 88 6535 4373 3807 107 3576 126 6574 1000 4906 K 53 4108 * 4311 3756 6687 2969 5984 6332 2206 4945 * 3317 5232 4571 4024 3841 3782 5067 * * 53 118 5094 4348 2277 333 1833 475 6584 1557 5057 K 54 4855 * 4126 2041 6104 4460 * 6099 1981 6076 * 4701 6174 4203 2881 5287 5254 5139 * * 54 56 6174 5357 2585 263 1125 885 6791 1000 4898 T 55 6412 * 4889 2380 * 6797 * 3869 3304 3500 * * 3515 6491 4219 4065 2441 3334 * * 55 30 5589 * 3170 170 845 1174 6669 1000 4348 V 56 4659 * * 6314 3745 * 6306 2135 5982 2240 4626 * * * 4900 * 5938 1784 * 5342 56 0 * * * * 837 1183 6676 0 3248 Q 57 3222 * 4407 1690 6614 5652 5777 6607 3271 6338 * 6279 6070 4502 4383 3549 3170 4997 * 6212 57 0 * * * * 0 * 6684 0 2226 I 58 6721 5708 * * 2629 * * 1067 * 2690 * * * * * * 5734 2657 * * 58 0 * * * * * * 6699 0 0 P 59 4138 * 3051 3495 * 5761 5667 * 4150 7030 5836 4552 1039 6458 * 4609 4935 * * * 59 0 * * * * * * 6699 0 0 Y 60 * * * * 2015 * 6459 4901 4501 1922 7029 * * * 2708 6112 * * 4085 2594 60 17 * 6443 * * * * 6699 0 0 S 61 2752 * 2420 3129 * 6756 6095 * 3636 4915 * 3216 4876 5142 4913 2617 4418 * * * 61 0 * * * * * 0 6689 0 1000 L 62 3911 * 2286 3354 * * 6440 * 3167 3797 4786 2413 * 2736 4595 6756 * * 6478 * 62 0 * * * * 0 * 6689 0 1000 V 63 6408 * * * * * * 794 * 3501 5055 * * * * * * 1770 * * 63 0 * * * * * * 6699 0 0 S 64 2033 * 3172 4279 * * 6588 6634 2042 5821 * 6566 * 4421 3719 3072 4670 5590 * * 64 0 * * * * * * 6691 0 0 K 65 * * 6475 4036 4313 * 6761 5174 1239 4816 5230 4819 * 4633 2856 3767 4646 5658 * 7007 65 0 * * * * * * 6691 0 0 A 66 542 6666 * * * 6416 * 2937 * 6314 6598 * * * * 6608 6931 3063 * * 66 0 * * * * * * 6691 0 0 R 67 * * * * * * 4093 5615 2532 6368 * 2167 * 4323 1265 6359 6134 5599 * * 67 0 * * * * * * 6685 0 0 L 68 * 5405 * * * * 6197 * * 442 6381 * 6640 6135 * 6273 6538 3052 6808 4747 68 0 * * * * * * 6509 0 0 A 69 1872 * 5815 2078 5551 * * 4634 * 5962 5806 * * 3259 * 4376 5669 2586 * 4722 69 0 * * * * * * 5944 0 0 V 70 * * * * 3957 * * 1967 * 4478 * * 5493 * * * * 815 * 4493 70 0 * * * * * * 5887 0 0 K 71 * * 5471 661 * * * * 2001 * * * * * 3395 * * * * * 71 0 * * * * * * 5816 0 0 L 72 * * * * * * * 1703 * 863 * * * * * * * 2808 * * 72 0 * * * * * * 4657 0 0 L 73 * * * * * * * * * 0 * * * * * * * * * * 73 0 * * * * * * 1000 0 0 E 74 * * * 0 * * * * * * * * * * * * * * * * 74 0 * * 0 * * * 1000 0 0 //