HHsearch 1.5 NAME d1hdfa_ FAM FILE d1hdfa_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1hdfa_.a3m DATE Mon Mar 8 20:10:36 2010 LENG 100 match states, 100 columns in multiple alignment FILT 108 out of 279 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.7 EVD 0.4469 -0.1446 SEQ >ss_dssp CEEECCCSCCCTTCEEEEEEGGGEEEEEEECSEESCGGGSTTTTTTCCEEEECTTEEEEEESSGGGCSSEEEECTTEEESCGGGGTCTTCCCEEEEEECC >sa_dssp ECDDECEEEBDDBCABABDECECEDEBBDADDEBEBAEECEEACDCABAABAADDACACABDDCDDEDDDCEBDCECDBDCADEDEACDBABAACBDDDE >ss_pred CCEECCCCCCCCCEEEEEECCCCCCCEEEECCCCCCHHHCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEC >ss_conf 9012134689997499997798861049981887780202667771689993799799999889863107999517883000125767740365998749 >Consensus xxxxxxxgxpxxxxvxlYexxnfxGxsxxxxxxxxxxxxxxxxNdxisSixVxxgxxvxlyexxnfxGxxxxlxxxxxxxdlxxxgxndxiSSxxVxxxx >d1hdfa_ SVCKGVSGNPAKGEVFLYKHVNFQGDSWKVTGNVYDFRSVSGLNDVVSSVKVGPNTKAFIFKDDRFNGNFIRLEESSQVTDLTTRNLNDAISSXIVATFE >UniRef50_C4UGF9(106-213:815) Beta-gamma-crystallin n=4 Tax=Yersinia RepID=C4UGF9_YERRU E=6e-20 s/c=0.91 id=22% cov=97% ----AISSFKIKKAACFYDDDYFSGEAFCISAGEeidlyvdhnginQNYPIINYMNDEIKSINIPFGFQVSVYEDDHFNGTSFTLTDDIFLSDLKYLKMD DKITSLRVTEQE >UniRef50_Q6BFM9(541-625:639) Calcium/calmodulin-binding membrane protein PCM4-related n=5 Tax=Paramecium tetraurelia RepID=Q6BFM9_PARTE E=3e-09 s/c=0.74 id=23% cov=73% ---KGFKLYYEKPDACatLYTECNYTGKSFNMCEDLPNF-QLAKYPSKIKSIQVPAGAKVILFDEMDYNGKTIEYTEN---------------------- -- >UniRef50_UPI0001B51574(45-126:127) hypothetical protein SvirD4_24575 n=1 Tax=Streptomyces viridochromogenes DSM 40736 RepID=UPI0001B51574 E=6e-06 s/c=0.63 id=20% cov=56% ---------------CVWEHTGYQGRFFSAPGSVANIGAYM--NDRTTSYWNRTDTWITLYNDSNYGGSCLV---------------------------- >UniRef50_P22914(7-84:178) Beta-crystallin S n=276 Tax=Vertebrata RepID=CRBS_HUMAN E=8e-13 s/c=0.96 id=25% cov=77% -------------KITFYEDKNFQGRRYDC---DCDCADFHTYLSRCNSIKVEGGTWA-VYERPNFAGYMYILPQGEYPEYQRWMGLNDRLSS------- >UniRef50_A1SWJ5(237-324:549) Putative uncharacterized protein n=1 Tax=Psychromonas ingrahamii 37 RepID=A1SWJ5_PSYIN E=3e-09 s/c=0.72 id=24% cov=59% --------QPKADQVALFMHSNFVAPCVVKNMGLYgNSSKIGLKNDSISSVIIGRDSQVLLCEHSNF--------------------------------- - >UniRef50_A0EA48(382-457:471) Chromosome undetermined scaffold_85, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0EA48_PARTE E=3e-06 s/c=0.70 id=18% cov=73% --------------IIIYSQCNFKGEALEACNS---LSEIEEFKAQIRSIYIPEGLGLTVYDGENFTGNMHKFKTSQECltTPLSFAQLNN--------- -- >UniRef50_B3PBJ2(164-252:502) Beta glucanase, putative, glu16F n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PBJ2_CELJU E=8e-13 s/c=0.84 id=23% cov=87% --------NGASAKVTVFQHCNYGGWSVGLDVGSYNLAALqsrGFIDNDASSLRVAAGYEAVLYQGNNFTGTSRVVTADDDC--LVNEGFNDNVTSVIV- --- >UniRef50_D0I6J1(340-426:426) 1-phosphatidylinositol phosphodiesterase n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0I6J1_VIBHO E=1e-10 s/c=0.78 id=23% cov=82% ------NGKSKVKSLIIYEHNDQQGKSLAVFNDMP--YVGNEFNDIMSSWEMPSNWEVRFYEHENYQGDYYTRSSMKGNADM----FNDKISS------- >UniRef50_Q8N1P7(205-297:616) Absent in melanoma 1-like protein n=28 Tax=Tetrapoda RepID=AIM1L_HUMAN E=0.0002 s/c=0.50 id=26% cov=27% --------------VVLFEAMDFEGHGVEVSKALPDVELV------------------------------------------------------------ # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 * * * * * * * * * * * * * * * 0 * * * * 1 0 * * * * * * 1000 0 0 V 2 * * * * * * * * * * * * * * * * * 0 * * 2 0 * * * * * * 2080 0 0 C 3 2079 390 * * * * * * * * * * * * * * * * * * 3 0 * * * * * * 2542 0 0 K 4 * * * * * * * * 1555 * * * * 2390 2499 2412 * 3263 * * 4 0 * * * * * * 4724 0 0 G 5 2643 * * 3942 * 1231 * * * * * 2747 3795 * * 2966 * * * * 5 0 * * * * * * 5262 0 0 V 6 2029 * * * 4384 * * 1807 * 4775 4317 * * * 4430 * 3886 2429 * 4842 6 0 * * * * * * 5670 0 0 S 7 2081 * * * * * * * 4642 4516 5040 3657 * 3660 4728 1624 3354 * * 5001 7 0 * * * * * * 6027 0 0 G 8 3404 4805 4736 * * 804 4528 * * 4083 * 3987 * * * 3410 * * * * 8 0 * * * * * * 6101 0 0 N 9 * * 3358 5471 4644 3764 3761 5432 4884 * 5127 2383 4346 3939 4564 3352 3211 5340 * 5167 9 72 5347 5388 2807 222 * * 6361 1000 0 P 10 4577 * 5823 * 3761 4602 5359 * 4094 4372 * * 1046 * 5606 3325 4624 5305 * 5401 10 89 4057 * 1585 585 * 0 6581 1601 1000 A 11 2199 * 3527 4457 * 3884 * 3376 3211 * 5254 * 2990 5901 4037 3810 4780 4622 * * 11 0 * * * * 0 * 6629 0 1000 K 12 3440 * 4289 2160 * 5573 * * 3440 * * 3676 4807 3776 3163 3028 4732 4036 * * 12 0 * * * * * * 6676 0 0 G 13 3777 * 3635 5524 * 2015 4809 * 3399 5877 * 2944 3426 6185 * 2886 * 5312 * 4933 13 0 * * * * * * 6865 0 0 E 14 4900 4318 5437 3003 * 3922 4354 * 2255 * * 4232 6514 3330 4085 3085 5645 5122 6385 4537 14 0 * * * * * * 7075 0 0 V 15 3017 * * * 4902 * * 1526 * 3685 5774 * 4974 * * * * 1442 * * 15 16 * 6545 * * * * 7095 0 0 F 16 4546 1695 * * 5016 * 5411 3195 4546 * * * * * 4683 4703 2232 3042 * 5047 16 13 6788 * 1000 1000 0 * 7147 1000 1000 L 17 * * * * 1638 * * 3317 * 1075 5343 * * * * * * 3660 * * 17 19 6288 * 1585 585 * * 7331 1000 0 Y 18 * * * * 1943 * 5366 * * * * * * * * * * * 4706 562 18 0 * * * * * * 7371 0 0 K 19 4864 6751 3415 1252 * 5926 6939 * 3712 * 5535 * 5987 4088 4819 2956 3948 7023 * 6795 19 0 * * * * * * 7371 0 0 H 20 6023 * 1955 2452 * 4049 2446 * 3771 4594 * 3248 * 5099 4859 * * * 5921 * 20 0 * * * * * * 7371 0 0 V 21 2773 3096 3295 3540 6190 4875 6204 5987 3269 * 5801 4910 3921 6347 5205 3700 3673 4156 * * 21 0 * * * * * * 7371 0 0 N 22 6597 5986 2158 6272 * 3026 4316 * 6829 * * 1095 * 5356 6893 5008 * * * 5443 22 0 * * * * * * 7378 0 0 F 23 * 5589 * * 847 4749 6667 * * * * * * 4772 * * * * * 1557 23 55 4733 * 1347 720 * * 7378 2199 0 Q 24 4886 * 4229 3911 * 2795 5367 6358 3238 5964 5920 5628 * 2492 3674 3128 3187 5225 * * 24 12 6865 * 1000 1000 * * 7378 1000 0 G 25 5316 * * * * 73 * * * * * 5379 * * * * * * * * 25 19 * 6287 * * * * 7376 0 0 D 26 3893 * 3609 2986 6639 4227 5710 6124 2814 4526 * 4175 4432 3085 3302 5241 4313 * 5582 5415 26 0 * * * * * 0 7357 0 1000 S 27 3036 4145 * 4297 6111 4650 5986 * 3695 6271 4562 * 4461 4036 4738 1403 5490 * * 5394 27 12 6930 * 1000 1000 0 * 7357 1000 1000 W 28 5395 * * 6424 2377 4412 5662 3475 4256 2799 4723 * * 4201 6321 6660 6704 2756 4149 3461 28 10 * 7150 * * * * 7376 0 0 K 29 3969 2455 4772 2874 5635 4601 * 6938 4520 * 5454 4821 6645 5322 5134 3630 3181 2851 5934 * 29 52 * 4814 * * 0 * 7380 0 1000 V 30 4282 6320 * * 2545 * * 3126 5202 1666 5351 * * * 6952 5613 4764 2346 * 5547 30 40 5179 * 1123 886 583 1590 7326 1987 2101 T 31 4495 3001 4302 4611 5192 3808 * 4656 4623 4890 5750 4691 4277 6058 6701 2599 2669 5374 * 4426 31 79 5294 5182 2895 208 * 0 7369 1573 1000 G 32 3088 6277 3331 3111 * 2978 * 4023 4551 4849 5693 3742 4943 4221 4451 4083 6110 4533 * 4442 32 87 4670 5697 1480 641 451 1898 7117 2636 2612 N 33 4894 * 1900 5155 * 1544 6060 6203 5391 * * 4265 5754 4585 4476 3584 * 6274 * 5538 33 79 6341 4620 2322 322 * 0 7336 1000 2171 V 34 5241 5314 3060 2896 5016 * * 3181 5040 4607 5104 4618 6476 4327 4925 3369 3967 2895 * 5460 34 71 4635 7035 2896 208 * 0 7288 2951 3584 Y 35 3151 6115 6576 6176 4570 4799 5470 3605 5864 6543 6698 5017 2359 5904 5985 3932 6550 5860 5419 1981 35 178 3561 4999 1971 425 956 1045 7297 3561 3694 D 36 4712 6722 1825 5733 * 6433 6852 4486 5991 6343 * 1878 5103 4931 6984 3182 4259 4975 * 5485 36 62 4778 7446 708 1366 1713 525 7343 2282 3478 F 37 3975 6584 5575 4613 3676 6252 5523 6429 4977 1486 5726 3554 4590 5081 7319 3201 * 4946 * 5155 37 65 5552 5442 1225 805 628 1503 7150 1679 2992 R 38 4604 * 3525 4584 6060 5242 5599 6426 3657 3398 6204 3699 3635 3737 4170 2555 4998 * 4351 5042 38 52 * 4812 * * 462 1867 7107 0 2746 S 39 3333 6838 3553 3712 5806 6028 6605 5288 3379 3122 5063 4216 * 3346 4073 3805 4682 4484 4557 6464 39 104 5019 4682 981 1019 0 * 7081 2203 2881 V 40 6664 * 5950 5160 4323 4051 * 3292 4075 2452 4026 3274 3888 5389 4505 4592 4125 3976 6568 5760 40 144 3795 5453 2190 357 430 1956 7130 3378 2472 S 41 3812 * 4291 4604 5087 1955 5016 5519 * 6618 4676 3135 5298 4611 5150 3059 6750 * 5228 3593 41 164 * 3217 * * 2128 375 7129 0 2557 G 42 4002 * 3421 4118 5508 2368 * 3543 4658 3433 * 3390 3880 4415 6956 4601 5739 5769 6326 4510 42 87 6685 4349 1585 585 133 3508 7097 1000 4394 L 43 5230 * 5785 * 1813 3727 * 3834 4590 3251 4106 * 4731 * 6468 6412 * 5353 2471 4186 43 35 5388 * 1337 727 2215 350 7217 1988 2804 N 44 7123 * 2774 6614 5077 5372 6517 * 6840 * * 681 4759 6377 6031 4778 4696 * * * 44 51 5902 5797 0 * 1529 614 7225 1000 2451 D 45 5804 * 808 6549 6493 5689 5510 * 4165 * * 2030 * * * 4813 * 6445 * * 45 37 6394 6184 3459 138 881 1130 7221 1000 2391 V 46 5174 4877 5018 4004 * 6609 6901 5746 2953 6258 * 4040 4966 3556 1984 3136 3256 7085 6758 * 46 0 * * * * 1478 642 7205 0 2165 V 47 2732 5600 * * 5973 5171 * 1319 * 3638 4378 * * * * 6430 4323 2438 6663 * 47 0 * * * * 1000 1000 7238 0 1665 S 48 4174 * 6207 6430 * 5309 6880 5897 3956 6919 * 5077 * 5048 3992 827 4005 * * 4389 48 10 7124 * 1000 1000 0 * 7240 1000 1000 S 49 5066 5923 * * * 6215 * * * * * * * * * 89 * * * * 49 26 5809 * 1090 916 * * 7251 1686 0 V 50 4486 5014 * * 4317 * 6452 1337 * 2973 4041 * * * * * * 2055 5292 6297 50 11 * 7046 * * * * 7245 0 0 K 51 5883 * 6851 5558 6247 * * 3852 1700 5797 7054 5727 * 3987 1944 4921 4730 5059 4731 4124 51 13 * 6832 * * 0 * 7243 0 1000 V 52 5565 5935 * * * * * 2065 * 3526 6489 3782 6178 * * 6427 * 923 * * 52 42 5539 7117 0 * 0 * 7311 1695 1000 G 53 4512 7077 5321 5825 4570 3615 6644 5403 6339 6451 * 4254 1395 5326 4282 3414 7203 3600 * 4921 53 56 6681 5152 3000 193 0 * 7300 1000 1000 P 54 3697 6187 3878 4115 5827 3282 6571 6833 4460 6180 * 4595 3125 5634 3439 2292 4272 4646 * 5631 54 16 6546 * 2000 415 0 * 7182 1000 2070 N 55 5302 * 3930 5799 * 664 * * * * * 3265 5043 5621 5585 3943 6821 6576 * * 55 55 6632 5210 0 * * * 7197 1000 0 T 56 2679 3490 5893 5507 5217 5344 5721 5385 6690 3364 3797 5277 6554 4936 4691 3977 4538 3915 3800 3467 56 17 6383 * 0 * 0 * 7182 1000 1909 K 57 4727 * 4738 3205 * 5321 6199 6147 3641 5309 6773 5575 4953 2859 3379 4643 3589 4299 2595 5481 57 14 * 6691 * * * * 7199 0 0 A 58 2593 6145 * * 5555 * * 3569 * 3307 5021 * * * * * 6859 1109 3465 5658 58 213 * 2866 * * 0 * 7187 0 1000 F 59 * 4402 5399 3754 4570 * * 2989 4149 6293 * * * 6592 3698 3553 1614 3216 * 6560 59 25 * 5874 * * 118 3665 7149 0 4130 I 60 3212 * * * 3466 4892 6378 2935 * 1462 5967 * * * * * * 2109 6135 * 60 18 * 6349 * * 0 * 7173 0 1694 F 61 * 3123 * * 1947 * 5238 5965 * * * * * * * * * * 7119 796 61 0 * * * * * 0 7177 0 1000 K 62 4929 * 3511 1334 * 5361 * * 3138 * 5263 4439 * 3185 4244 3582 6317 6174 * * 62 0 * * * * * 0 7177 0 1000 D 63 * * 1733 4399 * 3716 2192 * 3679 * * 2905 * 5268 4606 5315 * * * 4230 63 0 * * * * 0 * 7177 0 1000 D 64 3071 5685 2565 3186 5351 4175 6653 4424 5052 5549 5787 5474 2943 6626 6058 3205 3979 6119 * 6269 64 0 * * * * * * 7199 0 0 R 65 * * 2314 5837 4916 3007 4065 * 4241 * * 1272 * * 4993 4674 * * * 5230 65 0 * * * * * * 7199 0 0 F 66 * * * * 898 6111 6058 * * 5009 * * * 5145 5847 * * * 6628 1526 66 0 * * * * * * 7199 0 0 N 67 5282 * 6499 4159 * 3329 * * 3362 * * 3062 * 2974 3403 2757 2285 * 5986 * 67 15 * 6626 * * * * 7420 0 0 G 68 6518 * 6113 * * 97 * * * 6228 * * 6216 * * 6270 * * * * 68 8 * 7477 * * 0 * 7420 0 1000 N 69 4392 * 4041 3718 * 4825 3867 6608 2853 5686 * 4075 4014 4426 2170 3757 4233 6342 * 6134 69 0 * * * * * 0 7467 0 1000 F 70 4175 3107 6109 5637 4837 5064 5174 * 3528 * 4813 4956 6216 3350 3404 2694 4179 6492 * 3059 70 46 * 5001 * * * 0 7424 0 1000 I 71 4465 5793 6487 5707 3088 * 5319 3179 6210 4130 4863 * * 5007 4190 6083 3441 3012 4939 2328 71 0 * * * * * 0 7328 0 2517 R 72 4644 5771 7019 3687 5366 * 6548 4219 3702 3750 5925 6175 6432 6670 3523 3887 2548 2303 6936 5132 72 12 * 6874 * * 961 1040 7330 0 2517 L 73 4906 * * * 2410 * * 2889 * 1289 6484 * * * 5075 * * 2810 * 4297 73 82 6254 4565 3322 152 1590 583 7355 1000 1960 E 74 * * 4494 2507 6381 5251 4848 5187 3396 6480 4978 4246 6388 4494 3728 4938 1942 5077 * 4860 74 51 * 4853 * * 591 1573 7295 0 3124 E 75 2854 5307 5497 2107 5879 3899 6465 6593 3446 * * * 6310 4369 3141 2565 6352 * * 5104 75 32 5528 * 0 * 1105 902 7220 1510 2536 S 76 6172 * 1683 * * 2651 * * * 6605 5912 2681 * 6554 * 1983 4160 * * 6246 76 174 4833 3665 0 * 0 * 7159 1612 1790 S 77 4651 6266 5579 4997 4515 3274 3797 3022 3218 * 5033 6496 * 5705 * 3089 3084 3487 5703 4618 77 101 * 3888 * * 1575 590 7230 0 3338 Q 78 4329 * 3380 4236 6187 3414 4988 * * 5679 * 2791 4342 3830 4428 2446 5068 5552 * 3361 78 126 * 3580 * * 1918 444 7124 0 3751 V 79 3542 2997 3620 6143 6268 5556 6125 4053 5617 2900 5726 4651 3242 5658 * 4218 4498 3292 * 4443 79 73 5483 5203 1000 1000 1938 436 7042 1000 4211 T 80 3141 * 2930 6001 3642 3699 5511 5701 6124 3580 5725 4579 2975 5507 4206 3521 3436 * * * 80 51 5821 5881 2585 263 916 1089 7084 1000 3983 D 81 3953 * 1396 3439 5209 3764 5771 * * 4382 * 2424 5675 5178 * 5459 * * * 4637 81 101 4576 5285 1088 917 0 * 7169 1579 3048 L 82 4564 * 6013 * * 5893 5658 * 5991 688 5841 5081 * 4165 * 5822 5034 5674 5899 3609 82 26 * 5826 * * * 0 7023 0 1647 T 83 3802 5837 5894 4578 * 3747 5566 4863 3274 4217 5772 4201 6018 4495 2884 3116 4017 3058 * * 83 20 * 6161 * * 1575 590 6831 0 2093 T 84 3042 * 3487 4499 4855 2847 * 4942 3305 5682 6105 3916 4288 4301 4595 4048 4364 * 4194 5025 84 0 * * * * * 0 6795 0 2100 R 85 3119 * 4018 5258 * 4187 4224 3011 5069 2669 4167 4916 5918 5965 3713 5631 4952 5794 * 3191 85 0 * * * * 1519 619 6795 0 2100 N 86 4675 * 4041 4748 5751 1145 5636 * 4432 * * 2668 6294 5687 4103 5060 * 5957 * 4974 86 20 6170 * 0 * 0 * 6803 1000 1573 L 87 5162 * * * 1978 5999 5808 * * 1445 2676 5777 * * 6458 * * 5677 3359 6130 87 19 6256 * 0 * * * 6823 1000 0 N 88 5242 * 3393 * 4916 4773 5798 5479 * * * 634 * 5790 5727 3826 * * * 5909 88 0 * * * * * * 6823 0 0 D 89 * * 667 * * 4897 * * * * * 1829 * * 4928 5479 * * * * 89 0 * * * * * * 6823 0 0 A 90 4396 * 3096 3358 * * * * 2248 6044 * 3456 * 2816 3092 3859 3792 5588 * * 90 0 * * * * * * 6787 0 0 I 91 3620 5498 * * 5407 * * 804 * 4355 5931 * * * * * 3531 2753 * * 91 0 * * * * * * 6755 0 0 S 92 5577 * * * * * * * 5896 * * 5666 * 5542 4624 335 3507 * * * 92 0 * * * * * * 6755 0 0 S 93 * * * * * 5378 * * * * * * * * * 35 * * * * 93 44 * 5071 * * * * 6722 0 0 X 94 3783 4729 * * 2483 * * 2683 * 2163 3970 * * * * * * 2315 * 3900 94 0 * * * * * 0 5887 0 1000 I 95 * * * 3992 * * 4907 3636 2929 5074 4012 4804 * 3244 1497 * * 3848 * 4823 95 0 * * * * 0 * 5903 0 1000 V 96 * * * * * * * 3321 * 3280 4473 * * * * * * 411 * * 96 0 * * * * * * 5929 0 0 A 97 3323 * * 4477 * * 4004 2861 4250 4049 4478 * * * * 2122 1901 * * * 97 0 * * * * * * 5113 0 0 T 98 * * * 3826 * * * * 3963 * * * * 4026 * 1718 1000 * * * 98 0 * * * * * * 4452 0 0 F 99 * * 2737 * 1535 * * * * * 2599 * * 2645 2474 * * * * * 99 0 * * * * * * 2956 0 0 E 100 * * * 0 * * * * * * * * * * * * * * * * 100 0 * * 0 * * * 2956 0 0 //