HHsearch 1.5 NAME d1ha6a_ FAM FILE d1ha6a_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1ha6a_.a3m DATE Mon Mar 8 17:05:35 2010 LENG 70 match states, 70 columns in multiple alignment FILT 106 out of 237 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.2 EVD 0.4254 0.3726 SEQ >ss_dssp CCCCCCSSSBCSSCCCGGGEEEEEEECSSSSCSSCEEEEEESSSSSEEECTTSHHHHHHHHHHHHHTSCC >sa_dssp EEEDEBCEDCBEDDBEDECBECCDDBEDEEEADDEAACACBEEDECBAABCECEBAEEABDEBDEEEEEE >ss_pred CCCCCCCEEEECCCCCHHHEEEEEEEECCCCCCCCEEEEEECCCCEEEECCCCHHHHHHHHHHHHHHHCC >ss_conf 9975444123356258523669999847898985259999726988850787068999999999987409 >Consensus asxxxCCxxxxxxxIpxxxIxxyxxqxxxxxCxxxaVIfxtkxgkxiCxdPxxxWVkxxixxlxxkxkkx >d1ha6a_ ASNYDCCLSYIQTPLPSRAIVGFTRQMADEACDINAIIFHTKKRKSVCADPKQNWVKRAVNLLSLRVKKM >UniRef50_UPI0000F2BB77(32-90:120) PREDICTED: similar to SCM-1beta n=1 Tax=Monodelphis domestica RepID=UPI0000F2BB77 E=2e-10 s/c=1.13 id=27% cov=86% ------CVSLTSKRIPVNSVKSYIIEEGS----MRAVIFVTRKGIKICADPEVSWAKGVIRAVDSRTTK- >UniRef50_Q8UUJ9(29-93:94) Stromal cell-derived factor 1 n=17 Tax=Tetrapoda RepID=SDF1_XENLA E=0.0009 s/c=0.69 id=22% cov=91% -----CPCRYFESNVPKSNIKHLKILSTS-NCSLQIVARLKHNGKQICLDPKTKWIQEYLEKaLNKKAKK- >UniRef50_Q20IK2(26-92:188) CC chemokine SCYA118 n=1 Tax=Ictalurus punctatus RepID=Q20IK2_ICTPU E=8e-12 s/c=1.07 id=26% cov=97% -SPANCCNKINRKQVRVTSIVSYWKQNKG-LCPVTAIVFTLNNGKFLCSNPVSPWTKKAMRKLNKEAKQ- >UniRef50_A9ZPD4(27-83:84) Chemokine CCL-C25s n=2 Tax=Danio rerio RepID=A9ZPD4_DANRE E=6e-07 s/c=0.97 id=25% cov=79% -----CCFNFIDFPIPANKIVS--AVRTSSRCSSKGIMVTTPR-TQFCVKPDEDWIKPIMEK-------- >UniRef50_P10145(29-98:99) IL-8(9-77) n=35 Tax=Theria RepID=IL8_HUMAN E=3e-11 s/c=0.99 id=26% cov=100% AKELRCqCIKTYSKPFHPKFIKELRVIESGPHCANTEIIVKLSDGRELCLDPKENWVQRVVEKFLKRAEN- >UniRef50_B2ZAA8(29-90:103) CC chemokine n=3 Tax=Percomorpha RepID=B2ZAA8_PSEMX E=2e-05 s/c=0.81 id=26% cov=87% -----CCTKVST-EIVTAPIIGYRIQRRNLPC-VRAVIFETTEG-DVCSHWRQDWVFEKIKELAQAQR-- >UniRef50_Q6VZ64(23-85:111) CNPV283 CC chemokine-like protein n=1 Tax=Canarypox virus RepID=Q6VZ64_CNPV E=5e-05 s/c=0.77 id=20% cov=86% -----CCNQYSRNKINKDDIAIIRY--SSCTCKFgPAVIFRMVNGKEICILEDATWLPSILDYMNAR---- >UniRef50_C1BY37(22-89:102) C-C motif chemokine 25 n=1 Tax=Esox lucius RepID=C1BY37_ESOLU E=5e-13 s/c=1.11 id=27% cov=91% ----DCCLKSVHemNKYTKRMVMSYRVQQTDGGCNIPAVVLTMKKGRRFCVHPNAKWVKELMENVQSKM--- >UniRef50_UPI00003AD6F7(29-96:100) PREDICTED: similar to chemokine CXCL13/BCA-1 n=4 Tax=Neognathae RepID=UPI00003AD6F7 E=6e-09 s/c=0.91 id=22% cov=97% --NLNCrCAKTTTAFIPLRKYESVEVRPVGSSCRRLEVLIKLKTLERICVDPNTPWVRKLLQDLPKLKKK- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * A 1 404 * * * * * * * * * * * * * * 2035 * * * * 1 0 * * * * * * 4199 0 0 S 2 2724 * * * * 4037 * * 4198 * * * * * * 922 3240 3326 * * 2 0 * * * * * * 4827 0 0 N 3 3592 * 2231 3619 * * * * 4504 * * 1881 2900 4366 * 3571 * * * 4628 3 0 * * * * * * 5029 0 0 Y 4 2969 * * 4697 * * * * 3840 1615 * * * 3049 * 3686 2999 3782 * 4608 4 0 * * * * * * 5066 0 0 D 5 * * 1130 5299 * 5026 4333 5294 4398 * * 3870 * 4431 3120 3151 * 5508 * * 5 0 * * * * * * 5556 0 0 C 6 * 21 * * * * * * * * * * * * * * 6113 * * * 6 355 2198 * 0 * * * 6383 4081 0 C 7 * 91 * * * * * * * 5912 * * 5706 * * * * 6395 6212 * 7 18 6321 * 0 * * * 6418 1000 0 L 8 5553 4344 * 6784 2851 * * 3812 4912 1853 4796 4918 4469 * 4786 5164 4422 2784 * 5042 8 12 6965 * 0 * * * 6418 1000 0 S 9 4914 7118 * 4237 6950 3484 6292 * 2104 * * 3322 6704 3385 2858 2723 3855 * * * 9 26 5799 * 1000 1000 * * 6418 1391 0 Y 10 4627 * * 5069 2609 * 6309 5817 6938 3338 5303 5912 * * * 4435 2833 2618 * 2077 10 16 6475 * 0 * * * 6418 1000 0 I 11 4739 6817 * 5590 4859 6476 3783 3425 5800 5822 * 4758 * 4133 6835 2032 1974 4109 * 5263 11 33 * 5470 * * * * 6418 0 0 Q 12 4521 * 3689 3982 * 5573 3782 * 3904 5690 * 4158 4591 4189 3087 2730 2405 6167 * 6347 12 30 5585 * 1000 1000 0 * 6400 1476 1581 T 13 3988 * 6572 4712 5973 3238 6093 6907 2281 * 6513 3818 6710 4044 2072 4644 3932 5548 6829 6365 13 49 6958 5299 1000 1000 * * 6421 1000 0 P 14 4338 * 5532 3648 4040 4616 * 6056 2898 5836 5589 5686 2520 5314 2111 5473 4895 4222 * * 14 15 6580 * 0 * 0 * 6417 1000 2141 L 15 * * * * 6972 * * 1007 6068 2576 6230 * 5516 * 5413 * 4587 2295 * 7003 15 52 6068 5598 1000 1000 * * 6421 1000 0 P 16 6911 * 5909 6164 * 4926 3690 6799 4482 * * 3894 761 * 3772 5409 5153 6064 * * 16 28 6604 6780 1585 585 0 * 6389 1000 1523 S 17 4051 5119 * 5167 3701 6256 5875 4937 3509 2445 5740 6228 2640 6201 3693 4702 4728 3596 6359 5836 17 49 6217 5640 1000 1000 0 * 6417 1000 1000 R 18 5408 * 3505 4730 6562 4435 5321 6917 2332 * 6188 3079 * 4053 2462 3212 4578 4986 * 7186 18 0 * * * * 0 * 6401 0 1522 A 19 4552 * 5547 * 4162 6969 3166 4172 3305 2871 5005 3036 5164 4656 3380 4501 4970 4510 5513 6829 19 17 6400 * 0 * * * 6421 1000 0 I 20 5141 * * * 6308 * * 900 * 2457 6745 * * * * * * 2234 * 5715 20 30 6852 6365 0 * * * 6421 1000 0 V 21 4202 * 5714 3495 * 7048 * 4364 2419 3990 4925 * * 3937 2757 5998 3470 2476 * * 21 11 * 7052 * * * 0 6401 0 1000 G 22 3972 4882 4081 4108 * 2646 4732 6381 4610 6726 * 3642 * 6733 3785 1862 3846 7069 * 6463 22 34 * 5442 * * 976 1024 6397 0 1587 F 23 7143 5686 * * 3971 6308 * 3621 * 2934 6276 * * * * * * 3263 5603 869 23 89 7088 4250 0 * 1756 507 6393 1000 1602 T 24 6875 * 5743 2773 4296 * 4967 5793 3298 6340 5598 * * 3491 2285 3318 4033 * 4902 3293 24 82 * 4177 * * 1387 695 6379 0 3317 R 25 5583 * * 5120 5334 * 4833 2189 3640 3982 4785 * * 4125 3755 6683 6338 2290 4886 3328 25 249 * 2656 * * 1111 897 6374 0 3599 Q 26 5124 * * 5109 4495 * * 3051 5102 3075 6455 * * 1164 5265 6692 3770 5498 5157 6272 26 43 * 5077 * * 1475 643 6309 0 4498 M 27 5013 * 4606 2786 4200 6156 5255 6405 4895 3800 6921 4774 2028 4063 4309 3944 3701 5104 * * 27 44 * 5056 * * 0 * 6352 0 4162 A 28 2840 * * 4767 * 5625 * 4544 5483 7072 5657 5424 3016 6293 4715 3275 1625 3545 * * 28 70 * 4395 * * 0 * 6410 0 1631 D 29 * * 3601 4982 * 2101 5778 * 3563 5507 * 4450 6511 5631 4617 1709 3258 * * * 29 119 * 3661 * * 1213 815 6391 0 2924 E 30 4183 6294 4439 4409 * 3524 6941 5885 4806 4326 * 4242 2124 3862 4646 2225 5465 6168 * * 30 0 * * * * 1290 758 6398 0 3898 A 31 6028 * 5604 5204 * 2675 3299 5467 6265 4021 6707 3504 4159 3204 3762 2734 4129 5885 * 5555 31 0 * * * * 469 1848 6432 0 3116 C 32 * 25 * * 5855 * * * * * * * * * * * * * * * 32 113 6691 3928 0 * 1000 1000 6423 1000 1613 D 33 3995 * 4361 4878 * 4669 4526 6818 4043 5632 5871 3392 2363 6373 3061 2636 3861 * * 6175 33 18 * 6337 * * 0 * 6322 0 2836 I 34 6724 * 6800 * 4628 * 5546 2866 2613 2732 5575 3156 6712 5344 3398 5586 4777 2851 * 6567 34 28 6390 7114 0 * 0 * 6412 1000 1000 N 35 5252 * 3387 4003 * * 5310 5489 2872 5910 5435 3644 2554 3931 3242 4847 3337 4763 * * 35 20 * 6212 * * * 0 6418 0 1000 A 36 752 * * 2203 * 3073 6470 5610 * * * 6632 * 5716 * * 6728 * * * 36 0 * * * * 0 * 6397 0 1815 I 37 6382 * * * 6595 * * 1621 * 3819 * * * * * * 4500 896 * * 37 0 * * * * * * 6421 0 0 I 38 5708 * * * * * * 825 * 3881 4870 * * * 4618 * * 1871 * * 38 0 * * * * * * 6421 0 0 F 39 2700 * * * 861 * * 4070 * 2942 * * * * 5708 * * 3526 * * 39 0 * * * * * * 6421 0 0 H 40 6983 * * 4800 5290 6423 4010 3186 3234 3878 * 6051 * 4084 5083 5118 1921 3419 5725 3966 40 22 * 6068 * * * * 6421 0 0 T 41 6393 * * * 6065 * * 5240 4627 2059 3838 6668 6097 * * * 864 5464 * * 41 0 * * * * 0 * 6395 0 1000 K 42 5172 * * 4199 4913 * 4360 * 1205 3744 * 4275 5090 5078 3465 5764 6637 3352 * * 42 0 * * * * * * 6421 0 0 K 43 4493 * 5354 5719 * 5888 * * 1725 7199 5872 2423 * 4714 2225 4067 4011 * * 6852 43 71 6308 4815 0 * * * 6421 1000 0 R 44 6582 * 5604 6358 6734 628 6805 * 3769 6560 * 2918 * 4983 5274 5834 * * * * 44 98 6468 4200 0 * 0 * 6385 1000 2235 K 45 6796 * * 5452 * 4462 5947 4340 1559 4657 * 5311 6469 4899 1627 5246 5247 5581 * 6518 45 35 * 5393 * * 0 * 6374 0 2755 S 46 6514 * 6923 2813 5745 * 5694 6523 2316 5036 4673 4546 6730 2158 3879 4087 3764 4854 * 7014 46 56 5947 5501 508 1752 0 * 6393 1676 1594 V 47 6420 * * * 3169 * 6530 1530 * 2074 * * * * 6391 6705 6459 2145 * 5407 47 0 * * * * 0 * 6417 0 1719 C 48 * 27 * * * * * * * * * * * * 5773 * * * * * 48 0 * * * * * * 6421 0 0 A 49 1731 * * * * 4819 * 4693 * 2239 6477 * * * * 3469 4523 2067 * 5094 49 25 5840 * 551 1655 * * 6421 1482 0 D 50 6572 * 1050 6513 * * 4732 * 4523 5413 * 2167 3798 6365 5958 4271 5923 * * * 50 0 * * * * * * 6421 0 0 P 51 4807 * 6429 6397 * * 6494 6810 * 5157 * * 318 6595 6698 5867 4840 6992 6583 * 51 10 7192 * 1000 1000 * * 6421 1000 0 K 52 5174 * 2839 2642 * 5221 * 5773 2686 * * 3485 * 3867 4079 3086 3241 5801 * 6230 52 15 6637 * 2000 415 * * 6421 1000 0 Q 53 2197 * 2844 2729 * 6521 * 6829 3666 7074 * 4458 6811 2991 6629 3622 3975 4302 * * 53 14 6739 * 0 * * * 6421 1000 0 N 54 4433 * 3658 3499 * 4454 6423 * 2569 5746 5321 3939 2053 4497 3816 6012 3858 6542 * * 54 13 6806 * 0 * * * 6421 1000 0 W 55 * * 6567 * 4694 6782 * * 6713 5273 5922 6068 6382 6822 5708 * 6311 * 282 * 55 0 * * * * * * 6421 0 0 V 56 3999 * * * 5808 * * 3420 * 3940 * * * * * * 4039 554 * 5715 56 0 * * * * * * 6409 0 0 K 57 * * 6201 5271 * * * 4265 1586 6308 4141 5721 4835 1810 2868 6780 5581 * * * 57 0 * * * * * * 6409 0 0 R 58 6878 * 3489 3158 * 6979 6533 6295 1866 4994 * 3560 5956 4197 2168 4529 5447 6811 * * 58 14 6660 * 0 * * * 6407 1000 0 A 59 2840 6810 * * 5587 * 3967 2736 4457 1990 6467 5765 * 6756 5502 6863 5318 3232 * 3081 59 0 * * * * * * 6405 0 0 V 60 * * * * 6191 6617 * 1492 6750 2660 1955 6597 * 5576 6393 * 6414 2833 * * 60 14 6694 * 0 * * * 6405 1000 0 N 61 4853 * 4047 2553 * 6511 5520 6210 2349 5760 * 4320 * 2872 2431 4321 5395 5738 6815 * 61 13 6771 * 1000 1000 * * 6396 1000 0 L 62 4720 5655 5866 4178 3541 6365 3619 4847 1836 4692 5065 4919 * 4739 2969 5229 * 5619 * 4017 62 46 5004 * 0 * * * 6352 1502 0 L 63 5809 * * * 5324 * * 3182 6546 795 3847 * * 5297 6637 5976 * 2983 * 6291 63 0 * * * * * * 6288 0 0 S 64 6702 * 1942 3494 * * * 5009 2893 5562 5354 2558 6232 3717 3696 5018 4816 6097 * 6288 64 0 * * * * * * 6267 0 0 L 65 4139 * 6236 2970 * 5693 * 6459 1818 4840 5923 3434 * 3924 3131 2956 4828 * * * 65 0 * * * * * * 6238 0 0 R 66 5841 * * 4672 * 5309 * 6089 1302 4007 6656 4160 * 6158 1670 5748 5457 * * * 66 0 * * * * * * 6111 0 0 V 67 2761 * * * * * * 5005 2807 5821 3421 3205 5802 3044 4157 2309 * 4406 6088 * 67 0 * * * * * * 5988 0 0 K 68 3828 * * 2461 * * * * 1152 5226 5474 * * 3176 3432 4464 * * * * 68 0 * * * * * * 5785 0 0 K 69 * * * 4837 * * * * 837 * * 3497 * 2819 3072 * 4161 * * * 69 0 * * * * * * 5512 0 0 M 70 * * * * * * * * * 1875 1066 * * * * * * 2003 * * 70 0 * * 0 * * * 3465 0 0 //