HHsearch 1.5 NAME d1goua_ FAM FILE d1goua_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1goua_.a3m DATE Wed Mar 10 02:33:44 2010 LENG 109 match states, 109 columns in multiple alignment FILT 103 out of 110 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.6 EVD 0.4507 1.9227 SEQ >ss_dssp CCCCSHHHHHHHHHHHSSCCTTEECHHHHHHTTCCGGGTCHHHHSTTCEEEEEEECCTTCCSCCCTTCCEEEEECSCCSSSCCSCEEEEETTCCEEEESS TTSCCEECC >sa_dssp EDCCDBECAADCADEDEDCBEBBBCDEDAEEDDBDDEEBBACEDBEDDAABBCECECEEEDADEDEECEBDBAAADBEDCECCCCAAABADDCCACDAED ECDDCEDCD >ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCHHHCCCCCCCCCCEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCEEEECC CCCCEEECC >ss_conf 9101389999999984788732248899997498876488777089820475120668876574799768998716899886874689839983899354 010101219 >Consensus xxxxxxxxvxxylxxxxxLPxxyiTKxeAxxlGWxxxkxxlxxxxpgkxIGGdxFxNrExxLPxxxxxxyxExdVxxxgxxRgaxRIVxxxdgxxYyTxD HYxtFxxix >d1goua_ AVINTFDGVADYLIRYKRLPNDYITKSQASALGWVASKGDLAEVAPGKSIGGDVFSNREGRLPSAGSRTWREADINYVSGFRNADRLVYSSDWLIYKTTD HYATFTRIR >UniRef50_C2LPM1(49-159:168) Guanine-specific ribonuclease n=1 Tax=Proteus mirabilis ATCC 29906 RepID=C2LPM1_PROMI E=2e-33 s/c=1.29 id=41% cov=95% ----SANDVVNSLKATGKLPDNYVTKAQAEAAGWSRGKA-LGNYVPGGQIGGDIFANSTKILPDAPGRVWYEADIGLNNSMSRAKqpgtRLLYSNDGLTY VTSNHYDTAEAL- >UniRef50_B2TIQ0(63-123:123) Putative ribonuclease n=1 Tax=Clostridium botulinum B str. Eklund 17B RepID=B2TIQ0_CLOBB E=1e-06 s/c=0.89 id=39% cov=26% ----------------------------------------------------------------------------------GPRRIVKNIDtGEVYYTW THYGDagepaFVRIR >UniRef50_Q2KZM8(51-156:160) Putative ribonuclease n=1 Tax=Bordetella avium 197N RepID=Q2KZM8_BORA1 E=2e-22 s/c=1.01 id=36% cov=94% --IASLARTVRHIGKLGRLPSVYITSDEAKRLGWSGKSSeSLWgiKLTDQKWIGGDVYRNPS--LP--GNEKWYSADLDVVKGYRSSKRLVYNlRSRQMF ISTDLYAHFVEM- >UniRef50_C6BJ94(73-153:169) Putative uncharacterized protein n=2 Tax=Ralstonia pickettii RepID=C6BJ94_RALP1 E=7e-12 s/c=0.89 id=34% cov=72% -------DTLNQLYAYGTLPNRYVPEHQAN---WEPG-ANRPVMMQKRSIGGDPWG-PTGLL---------QADIDDGLSKRGPLRLIYAQDGKpQYVTT ---------- >UniRef50_D1S2P4(76-146:146) Guanine-specific ribonuclease N1 and T1 n=1 Tax=Micromonospora aurantiaca ATCC 27029 RepID=D1S2P4_9ACTO E=2e-11 s/c=0.99 id=35% cov=63% --------------------------------GWYSWSGGQCNFA------GGRFYNYEGQLP--AGATYYEYDVYPRacNASRDAYRIVVNKStGATWF SPDHYANFYRL- >UniRef50_UPI0001979AE9(143-197:199) hypothetical protein HcinC1_11895 n=1 Tax=Helicobacter cinaedi CCUG 18818 RepID=UPI0001979AE9 E=1e-10 s/c=1.23 id=40% cov=50% ---------------------------------------------------GKIFHNRDSILPQKPEGTYKRFDI---SNRHSAGRFVRDTQtGDVYYTT DHYETFIKI- >UniRef50_C7NJ28(108-179:181) Guanyl-specific ribonuclease Sa n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NJ28_KYTSD E=2e-17 s/c=1.25 id=38% cov=56% ---------------------------------------------PGKD--GSTFGNREGLLPAEDRGYYAEYTVPTPGeSDRGARRIVTGGDTTprngs sdpehWYWTADHYESFCE-- >UniRef50_A8L3G0(278-349:349) Guanine-specific ribonuclease N1 and T1 n=1 Tax=Frankia sp. EAN1pec RepID=A8L3G0_FRASN E=1e-09 s/c=0.89 id=35% cov=55% --------------------------------------------------GGTAYKNRsDPKLPETTEDgtpiRYKEYDRDpYDGVQRNDRRFVVGDDDA HYYTDDHYQSWVRFR >UniRef50_D2UBT0(64-129:129) Putative uncharacterized protein n=1 Tax=Xanthomonas albilineans RepID=D2UBT0_XANAL E=7e-09 s/c=0.93 id=40% cov=52% -----------------------------------------------------VFGNNEGRLPKSGNGqTYYEGKARLPQNDQaGTYRLVFlVTDGkkkk aieQRYYSADHYATFCTIQ # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * A 1 1096 * * * * * * * * * * * * * * 910 * * * * 1 0 * * * * * * 1916 0 0 V 2 * * * * * * * 1403 * * * * * * * * * 685 * * 2 0 * * * * * * 2116 0 0 I 3 * * * * * * * 1190 * 1489 * * * * * * 3059 * * 3548 3 0 * * * * * * 2506 0 0 N 4 3126 * * 3540 * * * * * * * 2598 * * * 4428 766 * * * 4 0 * * * * * * 2696 0 0 T 5 * * 2368 4602 * 4593 * * * * * * * 3034 * 1082 2952 * * * 5 0 * * * * * * 2811 0 0 F 6 3063 * * * 1930 * 3799 * 2004 2712 * * * 3451 * * * 4247 * * 6 0 * * * * * * 2811 0 0 D 7 3536 * 1855 2267 * * * * * * * 2069 * 2386 * * * * * * 7 0 * * * * * * 2900 0 0 G 8 * * 1836 2030 * 2969 3517 * 4297 * * 5290 4654 5536 3033 * * * * * 8 0 * * * * * * 3102 0 0 V 9 * * * * * * * 5161 * 4803 * * * * * * 3155 279 * * 9 0 * * * * * * 3115 0 0 A 10 1188 * * * * * * 4241 5129 3549 5209 * * * * 4304 5531 1762 * * 10 0 * * * * * * 3175 0 0 D 11 2193 * 1958 4190 * * * * 3677 5338 * 2665 * 4131 4077 3439 * * * * 11 0 * * * * * * 3175 0 0 Y 12 * * * * * * 3579 * * * * * * 4325 * 2882 * * * 452 12 0 * * * * * * 3175 0 0 L 13 * * * * * * * 1292 * 1042 * * * * * * * 4241 4237 * 13 0 * * * * * * 3175 0 0 I 14 * 4457 5041 5553 * 3399 2929 3741 2323 * 4237 * * 3101 3159 * * 5252 * 3407 14 0 * * * * * * 3175 0 0 R 15 2638 * 4457 2475 * * * 5041 2535 * * 3863 * 2440 3339 5355 4845 * * * 15 0 * * * * * * 3175 0 0 Y 16 * * 4957 * 3370 * 3148 * * 4114 * 2061 * * * 4932 3493 * * 1560 16 77 4261 * 0 * * * 3194 1000 0 K 17 3768 * * * * 1039 3194 * 3108 * * 3527 * 4125 4196 5969 * * * * 17 0 * * * * * * 3213 0 0 R 18 5257 * 4274 4665 * * 3473 5195 1989 * * 5231 * 3021 1949 * 3528 * * 5783 18 0 * * * * * * 3213 0 0 L 19 * * * * * * * * * 0 * * * * * * * * * * 19 0 * * * * * * 3291 0 0 P 20 * * * * * * * * * * * * 0 * * * * * * * 20 0 * * * * * * 3291 0 0 N 21 * * 1677 3272 * 4189 * * 4474 5239 * 3538 3214 5523 3938 2502 * * * * 21 0 * * * * * * 3291 0 0 D 22 * * 5868 4391 4299 * * 5905 4227 * * 1028 * 4971 3833 * * 4322 * 2542 22 0 * * * * * * 3291 0 0 Y 23 * * * * 1783 * * * * * * * * * * * * * * 495 23 0 * * * * * * 3291 0 0 I 24 * * * * * * * 566 * 4001 4391 * * * * * * 2223 * * 24 0 * * * * * * 3291 0 0 T 25 * * * * * * * * * * * * 4501 * 5597 4386 225 4971 * * 25 0 * * * * * * 3291 0 0 K 26 * * * 4501 * * * * 221 * * * * * 4391 4322 * * * * 26 0 * * * * * * 3291 0 0 S 27 2363 * 3356 3906 * 5597 4501 * 2047 * * 3971 * 3908 3476 3517 5223 * * * 27 0 * * * * * * 3291 0 0 Q 28 * * 5474 930 * * * * 5223 * * 5830 * 1409 * * * 4971 * * 28 0 * * * * * * 3291 0 0 A 29 139 * * * * 4546 * * * 4347 * * * * * * * * * * 29 0 * * * * * * 3291 0 0 S 30 6030 * * 3363 * 5523 * 5371 1972 4629 * 4046 * 3466 1882 4519 * 3637 * * 30 65 * 4501 * * * * 3291 0 0 A 31 1852 * 3261 2838 * * * * 1807 * * 5276 * * 2840 5177 * * * * 31 0 * * * * * 0 3227 0 1000 L 32 2876 * * 5636 * * * * 4757 707 5231 * * 2905 * 4878 * * * * 32 66 4492 * 2322 322 * 0 3227 1000 1000 G 33 * * 5422 * * 34 * * * * * * * * * * * * * * 33 0 * * * * 0 * 3289 0 1000 W 34 * * * * * * * * * * * * * * 4567 * * * 62 * 34 0 * * * * * * 3370 0 0 V 35 * * 2269 4656 * * 5305 5598 2399 * * 2744 * 4500 5289 2622 4400 4192 * 4886 35 38 * 5258 * * * * 3329 0 0 A 36 2142 * * * 4598 2421 * * * * * 5875 1475 * 4437 3683 * * 4488 * 36 138 * 3457 * * 0 * 3330 0 1000 S 37 4025 * 5136 * * 1403 * * 2275 * * 4191 * 4781 4108 3954 4468 5129 4724 * 37 223 4191 3497 0 * * 0 3299 1000 1723 K 38 5387 * 4550 4538 * * * * 881 * * 5833 * 3676 3614 2557 * * * * 38 106 * 3815 * * 0 * 3164 0 2279 G 39 2989 * 3304 * * 938 * * * * * * * * * 3754 * 3777 3734 5118 39 201 4456 3570 0 * 0 * 3354 1000 1578 D 40 * * 2998 * * 4767 * * * 4159 * 1027 3208 * * 2687 5167 * * * 40 71 * 4372 * * 0 * 3253 0 1427 L 41 4906 * * * 4514 * * * * 383 * * * 4767 4626 * * 5250 4256 * 41 38 5264 * 0 * 0 * 3288 1000 1000 A 42 3085 2246 3882 4460 * 3588 5722 * 5385 * * 3669 4656 5723 * 5971 5300 * 1980 * 42 66 4487 * 1000 1000 * * 3329 1000 0 E 43 4968 * 2706 2812 * * * * 2457 * * 2430 4050 3596 4826 3527 * 4656 * * 43 0 * * * * * * 3329 0 0 V 44 4813 * * * 3682 5300 * 5541 * 3560 4656 4968 * * * 5207 5289 1092 * 2630 44 113 3732 * 756 1294 * * 3329 1460 0 A 45 1295 5232 * * * * * 5207 * 1950 4656 * * * * 5541 2797 3737 * * 45 89 5265 4886 1000 1000 * * 3329 1000 0 P 46 5333 * 3250 5878 * 5542 * * 5269 * * 4319 664 3935 5742 * 4632 * * * 46 59 4632 * 0 * * 0 3322 1000 1000 G 47 * * * * * 361 * * 2751 * * * * 3774 * * * * * * 47 0 * * * * * 0 3322 0 1000 K 48 5532 * * * * 3261 * * 578 * * * * * 2909 * 5027 4632 * * 48 0 * * * * * 0 3322 0 1000 S 49 2500 4461 4941 * * * 5027 * * * 3527 * * 2900 * 1302 * 4572 4434 * 49 94 * 3983 * * * 0 3322 0 1000 I 50 * * * * * * * 192 * 3369 5156 * * * * * * * * * 50 0 * * * * 1544 606 3291 0 1730 G 51 * * * * * 67 * * * * 4465 * * * * * * * * * 51 0 * * * * 0 * 3388 0 1477 G 52 * * * * * 38 * * 5278 * * * * * * * * * * * 52 0 * * * * * * 3988 0 0 D 53 4815 * 1140 6026 * 4037 * 4172 4297 * * 6460 * * 5501 3615 3190 3272 * * 53 0 * * * * * * 3988 0 0 V 54 5274 * * * * * 4170 2633 5246 * * 5653 5301 * 1906 * 3474 1689 * 5739 54 22 6041 * 0 * * * 4000 1000 0 F 55 * * * * 336 * * * * * * * * * * * * * 4946 2511 55 0 * * * * * * 3990 0 0 S 56 4662 * 6456 4941 * 1436 5750 * 4079 * 5279 5748 * 2878 4172 3422 3647 * * 4055 56 26 * 5821 * * * * 3990 0 0 N 57 * * * * * 4707 * * * * * 56 * * * * * * * * 57 0 * * * * 0 * 3968 0 1000 R 58 3974 * 5296 * 3697 * * * * 5273 * 4287 4375 * 1109 4840 6142 * * 2352 58 93 5296 4747 0 * * * 3990 1000 0 E 59 * * 3633 423 * * * * * * * 5278 * 4838 * 4389 3940 * * * 59 48 * 4943 * * * 0 3905 0 1000 G 60 * * * 7141 * 1233 4825 * 2314 * * 5176 5248 6019 2353 3919 * * * * 60 0 * * * * 1000 1000 3822 0 1408 R 61 5315 * 4989 * * 6497 4465 2819 3741 2806 * 5797 4680 3546 2043 5010 5871 3410 * * 61 0 * * * * 0 * 3915 0 1000 L 62 * * * * * * * * * 0 * * * * * * * * * * 62 26 * 5826 * * * * 3993 0 0 P 63 * * * * * * * * * * * * 0 * * * * * * * 63 158 4502 4063 1787 494 * 0 4035 1502 1000 S 64 3992 * 2663 2789 * 7025 5846 6387 3142 6198 6938 6241 5756 2980 4175 2537 4110 5758 * * 64 134 * 3499 * * 1929 440 3923 0 2267 A 65 2316 6830 * 3494 * 3907 5767 4774 2185 * 6421 * * 2669 4135 3597 5159 5403 * * 65 36 * 5346 * * 1957 430 3861 0 2906 G 66 3240 * 3321 5437 * 2695 * * 3194 * * 6350 2159 5037 3594 3688 3638 * * * 66 60 * 4621 * * 1072 931 3971 0 2551 S 67 4179 * * 3773 * 1489 5559 * 4212 6973 * 3482 * 5896 2462 3082 6669 * * 5905 67 51 * 4846 * * 1298 753 3911 0 2535 R 68 6051 * 3996 4192 * 1304 6322 6684 6201 * * 4114 * 6344 1695 * * 4383 * * 68 120 3648 * 1443 662 595 1566 3884 2208 2777 T 69 * * * 6461 5658 * 4706 4618 3460 * * 4945 * 4750 3923 5129 2618 2816 * 1600 69 0 * * * * 769 1276 4003 0 1579 W 70 * * * * 5725 * * * * 6282 * * * * * * * * 1525 688 70 0 * * * * * 0 4035 0 1000 R 71 6926 * * * 4037 * 2838 5151 3315 * * * * 3812 1646 * 4470 * * 2142 71 0 * * * * 0 * 4035 0 1000 E 72 * * * 158 * * * * * * * * * 5826 5753 5039 4749 * * * 72 45 5021 * 617 1524 * * 3993 1510 0 A 73 1658 3056 * * 3818 5657 * * * * * * * * * * * 4578 3722 1496 73 0 * * * * * * 3993 0 0 D 74 * * 698 * * * 6098 * 5657 * * * * * * * 1668 4853 * * 74 11 7021 * 0 * * * 3993 1000 0 I 75 5657 * * 5948 * * 5457 1725 * 4065 * * 6098 * 5302 * * 892 * * 75 59 5547 5753 0 * * * 3993 1437 0 N 76 6117 * 1982 3963 * 4064 * 5481 4518 * * 1927 2747 * 4179 6764 5190 5335 * 6169 76 111 3755 * 1150 864 * 0 4041 2273 1000 Y 77 6271 * 5702 * 6451 7068 * 6611 4831 4283 * * 4131 6178 * 4410 1435 4394 * 1658 77 44 5073 * 573 1609 * 0 4041 1695 1000 V 78 * * 4157 6212 5077 5702 6656 * 4269 5625 * 3882 1483 4149 3020 4942 4438 3332 * 5931 78 49 4901 * 1000 1000 0 * 4041 1308 1000 S 79 6659 3571 5197 * * 1056 * * 4603 4245 * 3608 * 5274 3401 3300 * * * * 79 222 2811 * 0 * * * 3993 2092 0 G 80 3214 * 6239 6920 * 1274 5948 * 5656 5638 * 3366 5760 6616 4442 2476 6328 4749 * * 80 90 4044 * 1129 882 * * 3993 2217 0 F 81 * * 2997 * 7089 3746 2454 4749 3368 * 5869 3698 7325 5302 2306 4125 4808 * * 4174 81 193 2994 * 0 * * * 3993 2242 0 R 82 * * * * * 6390 4967 * * * * * 4739 4397 295 4163 * * * * 82 48 4944 * 0 * * * 4064 1515 0 N 83 * * 3540 * * 596 * * * * * 3320 6334 6620 4586 3505 * * * * 83 15 6636 * 1000 1000 * * 4073 1000 0 A 84 988 * 4881 4678 * 3265 * * 5663 * * 6749 2955 * * 3507 3780 * * * 84 0 * * * * * * 4073 0 0 D 85 5942 * 2823 3181 * 5744 5976 * 2623 5378 * 6513 * 4163 1452 * 5219 5788 * 4883 85 25 5869 * 2000 415 * * 4073 1000 0 R 86 * * * * * * 4702 * * * * * * * 57 * * * * * 86 0 * * * * * * 4073 0 0 L 87 * * * * 4247 * * 793 * 1722 6525 * * * 6238 * * 4541 * * 87 0 * * * * * * 4073 0 0 V 88 * 5923 * * * * * 2172 * 2578 * * * * * * * 751 * * 88 48 5318 7039 2481 285 * * 4073 1474 0 Y 89 5833 4333 * * 2619 7191 * 5190 5846 5906 * * * * 5741 5380 2034 3124 5972 1814 89 41 5167 * 814 1214 0 * 4070 1361 1000 S 90 4731 * 4209 7120 * 1232 * * * * * 4185 6805 * 6692 1513 5021 5606 * * 90 87 4091 * 851 1166 * * 4073 2016 0 S 91 4265 * 3717 4191 * 2325 7182 5714 4094 * * 2067 6021 4789 3928 3205 3864 * * * 91 18 6298 * 0 * * * 4073 1000 0 D 92 5703 * 927 5402 * 3001 6657 * 7282 * * 4032 * 3622 * 3413 5291 5785 * 6658 92 154 3403 7275 1241 794 * * 4073 2669 0 W 93 5038 6508 3819 6973 6697 759 * 7020 * * * * 4918 6165 4771 3856 3472 * 5974 6289 93 116 3690 * 2125 376 0 * 4074 2313 1000 L 94 4168 * 4210 2234 * * * 5810 4178 1958 4702 4340 * 2838 5473 4118 6483 5138 * * 94 170 3171 * 1540 608 * * 4073 2671 0 I 95 4318 3747 * 5127 6936 * 5265 2130 6348 4161 5010 7039 * 5165 2853 * 3894 2940 3649 4885 95 109 3784 * 1597 579 * * 4073 1864 0 Y 96 * * * * 2877 * * * * * 6338 * * * * * * * 3365 406 96 0 * * * * * * 4073 0 0 K 97 * * * * 5164 7041 * 4458 4618 3370 * * * * * 6127 * 2952 5163 713 97 0 * * * * * * 4073 0 0 T 98 * * * * * * * * * * * * * * * 2620 256 * * * 98 0 * * * * * * 4073 0 0 T 99 2954 * 2776 4161 * 3528 6184 * 4793 4330 * 5415 3715 5361 5887 3132 2541 5076 6561 5976 99 0 * * * * * * 4073 0 0 D 100 * * 138 * * * * * * * * 3961 * * * 5918 6558 * * * 100 0 * * * * * * 4047 0 0 H 101 * * * * * * 53 * * 4804 * * * * * * * * * * 101 0 * * * * * * 3950 0 0 Y 102 * * * * 6036 * * * * * * * * * * * * * * 22 102 0 * * * * * * 3950 0 0 A 103 2476 * 4097 1842 * 4960 * * 2687 * * 4643 * 3727 3383 4481 4961 7123 * * 103 0 * * * * * * 3950 0 0 T 104 * * 3946 * * * 3723 * * * * 4478 * * * 1339 1254 * * * 104 16 6502 * 2322 322 * * 3950 1000 0 F 105 5467 * * * 91 * * * * * 6407 * * * * * * * 5216 * 105 0 * * * * * * 3921 0 0 T 106 * 3002 * 2948 * * * 3639 4016 5062 * 5109 * 3344 3025 6283 2618 3057 6819 5756 106 0 * * * * * * 3977 0 0 R 107 4392 * * 1877 6256 * 5545 * 2795 6319 * * 5996 4327 1379 * 5240 6295 * * 107 0 * * * * * * 4045 0 0 I 108 * * * * 4855 * * 1133 * 2678 2765 * * * * * * 2279 * * 108 0 * * * * * * 3975 0 0 R 109 * * * 2194 * * * * 2336 * * * * 2364 1362 * * * * * 109 0 * * 0 * * * 3467 0 0 //