HHsearch 1.5 NAME d1gmua1 FAM FILE d1gmua1 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1gmua1.a3m DATE Mon Mar 8 22:05:25 2010 LENG 70 match states, 70 columns in multiple alignment FILT 65 out of 69 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.8 EVD 0.4842 2.0264 SEQ >ss_dssp CEEECEECSSCCCCSEEEEECHHHHTCSEEEEECTTSCEEEEECCSSCCCCTTCEEECTTSCCEEEEEEC >sa_dssp ECDACDCCEEEDEDDBCADBDDECBDDBECEBEBEDEDDABADBEEECDAEDDCBAABEEDECCADADDE >ss_pred CEEEEEECCCCCCCEEEEEECHHHHHHCEEEEECCCCCEEEEECCCCCCCCCCCEEECCCCCEEEEEEEC >ss_conf 9367562288766305898189998322034663899185998787742248837880799879999979 >Consensus MLxltqrxxxxxxaxdxlxLxxxxRxksRxrxxxxxGxexxlxLpRgxxLxxGDxLxxedGxxxVxVxAA >d1gmua1 MLYLTQRLEIPAAATASVTLPIDVRVKSRVKVTLNDGRDAGLLLPRGLLLRGGDVLSNEEGTEFVQVIAA >UniRef50_B1XHX4(6-75:149) Urease accessory protein E n=1 Tax=Synechococcus sp. PCC 7002 RepID=B1XHX4_SYNP2 E=0.0002 s/c=0.67 id=30% cov=99% -LILTQKYqpQAPIQVDLELFLTAAERQKSRQRLELDNGQAIHFNLSRGSHIHPDDYFQDATGSTLVQVKA- >UniRef50_Q0I660(12-80:155) Urease accessory protein ureE n=6 Tax=Synechococcus RepID=UREE_SYNS3 E=2e-05 s/c=0.72 id=34% cov=83% -------------AVMELPLSADQRTVLRGRRRTACGRDVLLQLPRERALMPGDRLTDAHEQVHVLVTAA >UniRef50_Q1C5B2(18-79:231) Urease accessory protein ureE n=43 Tax=Enterobacteriaceae RepID=UREE_YERPA E=3e-06 s/c=0.85 id=30% cov=90% ------REKLKDATFDLLILDQREAQKSRCRKSSTQGLDLGISLDRNVVLADGDVLAWDEETNVAVVV-- >UniRef50_Q2Y9M6(1-69:176) Urease accessory protein ureE n=5 Tax=Betaproteobacteria RepID=UREE_NITMU E=2e-16 s/c=1.26 id=34% cov=100% MLTLNTRINSADKVSAQLVLPYESRENSRLRTALSSGEEVAIFIPRGTVLRHNDLLMGDDG-RVVQIVAA >UniRef50_Q5LSQ1(10-73:149) Urease accessory protein ureE n=6 Tax=Rhodobacteraceae RepID=UREE_SILPO E=0.0009 s/c=0.70 id=26% cov=93% -----RRTGHWSEADDRVTLSYDDRFLRRKRLITVQDKAFLVDLAHTTSLEHGDAFQLEDG-RLIECIAA >UniRef50_A6VTV9(1-71:147) Urease accessory protein ureE n=4 Tax=Gammaproteobacteria RepID=UREE_MARMS E=2e-10 s/c=0.95 id=31% cov=100% MLDIYERLGThcHDPVYTTVTLTHEQRDRGRLKLVGENNEEVRVFLERGKPLLVGEFLKSECGK-IVQVAGA >UniRef50_B2SZD1(1-72:173) UreE urease accessory domain protein n=1 Tax=Burkholderia phytofirmans PsJN RepID=B2SZD1_BURPP E=6e-08 s/c=0.82 id=31% cov=96% MLLVNQILGRADAPRFShrqhvaVSISAHDAGRRRMRLHAEDGTELGIDLPRQNWLFHGAVL-YDDGARIVVV--- >UniRef50_C7JF66(14-71:161) Urease accessory protein UreE n=8 Tax=Acetobacter pasteurianus RepID=C7JF66_ACEP3 E=0.001 s/c=0.77 id=33% cov=73% -----------AAATEIFAADYEGRHRRRLVIDLQSGEKVLLDLEHARLLHAGDGLKLEDG--------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * 2971 197 * * * * * * * * * 1 0 * * * * * * 4104 0 0 L 2 * * * * * * * 2616 3827 384 * * * * * * * * * * 2 0 * * * * * * 4259 0 0 Y 3 4298 4410 4538 3349 4284 * * 2625 4836 3259 * 5027 * * 4916 * 3031 3260 * 3089 3 0 * * * * * * 4259 0 0 L 4 4294 * * * 3001 * * 2615 * 1071 * * * * * * * 3840 * 3118 4 0 * * * * * * 4348 0 0 T 5 * * 4683 2609 5036 * 4148 * * * * 2824 * * * * 927 * * 4538 5 0 * * * * * * 4348 0 0 Q 6 * * * 2618 * * * * 3392 * * * * 1248 2483 3674 3978 * * * 6 0 * * * * * * 4504 0 0 R 7 * * * * 3826 * * 3566 3580 4563 * * * * 476 * * * * * 7 0 * * * * * * 4670 0 0 L 8 3935 5063 4637 4536 * * * 2410 * 1340 * * * * * 4563 3533 5166 * 3613 8 191 3012 * 2425 297 * * 4670 2031 0 E 9 3362 * 4156 3231 * 2508 4563 * 3751 * * 4827 3224 3179 4637 4443 3560 5372 * * 9 127 4148 5172 611 1534 * * 4670 1598 0 I 10 2129 * 4107 5024 * 4141 3502 3326 * 3551 * * 3454 * 4167 3178 3392 * * * 10 270 2548 * 496 1781 * 0 4669 2615 1000 P 11 2317 * 3779 5144 * 4696 2924 * 4547 * * * 2568 5530 * 3633 * 2680 4106 * 11 0 * * * * 0 * 4710 0 1000 A 12 2085 * 1683 3644 * 3467 * 3478 * * * * 3875 5339 5452 4638 4764 * * * 12 0 * * * * * * 4742 0 0 A 13 1957 * * 3751 * * 6015 * 2396 5740 * 5425 3557 2799 4721 4025 3430 * * * 13 0 * * * * * * 4905 0 0 A 14 1199 * * * 5511 * * 4910 5382 * * 4946 4261 * 3683 4233 3315 2703 6006 * 14 80 4218 * 1255 783 * * 4912 1865 0 T 15 2984 * 2277 5938 3436 * 4681 5382 5348 4446 * 4946 * 5426 4892 3339 3235 3238 * 5334 15 24 5938 * 1000 1000 * * 4912 1000 0 A 16 3402 * 1104 3293 4142 * 5864 * 5980 2775 5496 * * * * 4608 4669 * * * 16 0 * * * * * * 5004 0 0 S 17 6589 * * 2919 * * 4402 5170 6137 4001 5834 6080 4440 3787 3944 3118 1814 4503 5886 5089 17 38 5271 * 2585 263 * * 4913 1000 0 V 18 * * * * 5296 * * 2617 * 1027 4641 * * * * * * 1834 * * 18 0 * * * * * * 4973 0 0 T 19 3203 5202 * 3099 4213 * 5202 5919 5853 5446 * * 3444 5057 * 3244 2116 2723 * * 19 0 * * * * * * 4906 0 0 L 20 5377 * * * 5430 * * 5359 * 107 * * * * * * * * * * 20 0 * * * * * * 4906 0 0 P 21 4688 * 1855 4458 * * * * * * * * 2811 * 5836 2238 1998 5890 * * 21 0 * * * * * * 4906 0 0 I 22 2575 * 5887 4694 2120 * 3813 5405 * 6510 5202 * * 3618 5304 4789 * 6302 4292 2272 22 0 * * * * * * 4906 0 0 D 23 4383 * 1391 2052 * 4484 4630 * 5390 * * 6126 * 5174 5919 5890 3853 6493 3945 * 23 0 * * * * * * 4906 0 0 V 24 3102 * 2456 1532 * 5377 * 5853 * 4817 6302 * * 3164 6875 5918 3756 4480 * 6567 24 0 * * * * * * 4906 0 0 R 25 2999 * * * * * * * * * 4307 * * * 279 * * * * * 25 0 * * * * * * 4906 0 0 V 26 * 6944 5912 3610 3610 5359 3296 4813 4413 * 6522 5853 5621 1932 4142 5244 3026 5477 * 3965 26 0 * * * * * * 4906 0 0 K 27 * * * * * * * * 1042 3635 * 5918 * 5390 1615 * * 3895 * * 27 0 * * * * * * 4906 0 0 S 28 6054 * * * 5516 4038 5695 * * 4234 * 4636 * * 2157 865 * 5958 * * 28 0 * * * * * * 4906 0 0 R 29 * * * * * * 5304 * * 5695 * * * * 104 5311 * * * * 29 0 * * * * * * 4906 0 0 V 30 * 4583 * * 3167 3457 5836 4087 3917 1636 3779 * * 3033 6130 * * 4561 * 4651 30 0 * * * * * * 4906 0 0 K 31 3906 * 5807 5863 * * * * 2166 5954 6466 * * * 766 5853 * 4558 * * 31 0 * * * * * * 4906 0 0 V 32 2734 5689 * 5853 5430 * * 3803 3109 2389 3659 * * * 2984 6054 3703 3134 * * 32 0 * * * * * * 4906 0 0 T 33 3672 * 4411 3600 5689 * 5359 5929 3627 * 4063 5304 5430 4604 3612 4630 1853 3287 * * 33 0 * * * * * * 4906 0 0 L 34 3932 * 4835 * 6307 4129 * * * 1563 5954 * * * * 2688 1645 * * * 34 0 * * * * * * 4906 0 0 N 35 3180 * 2152 2615 * 5766 * 5964 * 5390 * 5477 4438 4260 5695 2896 3211 4040 * * 35 0 * * * * * * 4906 0 0 D 36 4103 3561 2392 5446 * 2978 * * * 5807 * 3015 * 4104 4536 2361 3984 * 5964 * 36 0 * * * * * * 4906 0 0 G 37 * * 5061 * * 155 * * * * * 4344 * * * 5462 * * * * 37 0 * * * * * * 4906 0 0 R 38 4349 * 5359 2826 4578 * 6360 3163 4080 4223 5304 * * 3430 2129 5043 3665 4626 * 6522 38 23 5954 * 0 * * * 4906 1000 0 D 39 3168 * 1866 1264 * 5091 * * 4034 * * * 5276 5066 * 4871 5807 * * * 39 0 * * * * * * 4906 0 0 A 40 2884 * * * 2630 * * 2690 * 1912 * * * * * * * 1824 * * 40 0 * * * * * * 4906 0 0 G 41 2759 5446 * * * 1194 4445 5390 * 2123 * * * 4723 5912 * * * * 4703 41 0 * * * * * * 4906 0 0 L 42 4812 * * * 3441 * * 2908 * 1029 * * * * * * * 2350 4863 5750 42 0 * * * * * * 4906 0 0 L 43 6055 * 2084 * 1975 * * * * 3787 5964 3187 * 3626 4565 3096 * 4153 * * 43 0 * * * * * * 4906 0 0 L 44 * * * * 5750 * * 3816 * 162 * * * * * * * 5887 * * 44 28 5695 * 0 * * * 4906 1000 0 P 45 4274 * 3637 2035 * 6126 * * * * * * 858 5994 * 5127 6177 * * * 45 0 * * * * * * 4906 0 0 R 46 4510 * * 3290 * * 4087 * * * * 6059 * 5192 440 * 5994 * * * 46 35 5390 * 0 * * * 4906 1000 0 G 47 2850 * 4922 4720 * 901 * * * * * 4178 6130 4665 * 5621 3321 5284 * * 47 25 * 5887 * * * * 4906 0 0 L 48 4552 * 6731 5612 * 3019 4617 4911 4484 4285 * 4575 5510 4232 3646 3846 1784 4082 * 5779 48 15 6574 * 0 * * 0 4900 1000 1000 L 49 4071 * * * * * 3268 3165 5506 2516 6048 6316 3728 5952 4635 3874 4454 2117 5347 * 49 42 5118 * 657 1450 0 * 4900 1538 1000 L 50 * * * * * * * 5127 * 95 * * * * * * * 4835 * * 50 0 * * * * * * 4906 0 0 R 51 3163 * 4935 4676 5359 5890 2453 5390 4702 4625 5957 4398 * 3873 1743 5723 * 4626 * * 51 0 * * * * * * 4906 0 0 G 52 5377 * 1447 3271 * 2937 2434 * * * * 5304 3353 * * 4834 * 4981 * * 52 0 * * * * * * 4906 0 0 G 53 * * 5127 * * 157 5960 * * * * 4818 * * 5446 * * * * * 53 0 * * * * * * 4906 0 0 D 54 4713 * 491 2811 * * * * * * * * * 4702 * 3849 * * * * 54 0 * * * * * * 4906 0 0 V 55 2886 4937 * * 3816 3561 * 2913 5120 3334 * * * 5958 3793 * * 1864 * 4246 55 0 * * * * * * 4906 0 0 L 56 * * * * 3399 * * 4404 * 293 * * * * * * * 4581 * * 56 36 * 5359 * * * * 4906 0 0 S 57 3474 * * 3880 5894 4694 5566 * 3357 2966 5277 * * 2838 3391 3440 4587 2965 * 5869 57 67 * 4468 * * 0 * 4864 0 1000 N 58 2368 4255 3440 * * 4594 * * * 2283 * 4027 * * * 3161 2929 * 4369 4013 58 24 * 5919 * * 971 1029 4877 0 1558 E 59 3202 * 1825 1348 * 4687 * * 4679 * * 4326 * 4118 5011 * * * * * 59 0 * * * * 0 * 4953 0 1528 E 60 5064 4346 1166 2813 * * 5066 * * * * 3178 5621 5516 * 3333 4284 * * * 60 46 * 5007 * * * * 4906 0 0 G 61 4693 * * 4834 * 306 * * 4268 * * * 5832 5433 * 5346 * * * * 61 539 * 1681 * * 0 * 4898 0 1650 T 62 3318 * 2651 4893 * 4546 4017 * 2844 * * 4605 * 3779 * 2396 3033 4763 * * 62 448 * 1906 * * 0 * 4644 0 3533 E 63 3860 * * 2374 3914 5334 * * 5643 5214 * 4520 * * 1418 * 3592 3868 * 5015 63 30 * 5590 * * 0 * 4783 0 2851 F 64 * * * * 3675 * 4257 2086 * 1875 4682 * * * 5719 * 5523 2134 * 4219 64 35 * 5369 * * 0 * 4847 0 1000 V 65 3568 * * * * * * 1633 * 5520 * * * * * * * 807 * * 65 0 * * * * * 0 4812 0 1000 Q 66 3930 5753 * 2180 * * * 4888 3102 3974 5899 * * 2524 3251 5236 4575 3324 5857 * 66 0 * * * * 0 * 4854 0 1000 V 67 * 5303 * 5462 * * * 1717 * * * * * * * * * 626 * * 67 0 * * * * * * 4890 0 0 I 68 4503 * 5474 4099 5676 * * 2623 3727 3494 * * * 4644 2927 5445 4026 1873 * * 68 0 * * * * * * 4620 0 0 A 69 49 * * * * 4893 * * * * * * * * * * * * * * 69 0 * * * * * * 4505 0 0 A 70 108 * * * * * * * * * * * * * * 3794 * * * * 70 0 * * 0 * * * 4125 0 0 //