HHsearch 1.5
NAME  d1g2ya_
FAM   
FILE  d1g2ya_
COM   /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1g2ya_.a3m 
DATE  Mon Mar  8 23:37:53 2010
LENG  31 match states, 31 columns in multiple alignment
FILT  1 out of 5 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
NEFF  1.0 
EVD   0.5273  4.0967 
SEQ
>ss_dssp
CCCHHHHHHHHHHHHHHHTTCCHHHHHHHHC
>sa_dssp
EEDEECEEDEEEDDDDDEEEDDEEBCEEEEE
>ss_pred
CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHC
>ss_conf
9248998769999999971758899997409
>Consensus
mvsklsqlqtexlaallesglskealiqalg
>d1g2ya_
MVSKLSQLQTEXLAALLESGLSKEALIQALG
#
NULL   3706	5728	4211	4064	4839	3729	4763	4308	4069	3323	5509	4640	4464	4937	4285	4423	3815	3783	6325	4665	
HMM    A	C	D	E	F	G	H	I	K	L	M	N	P	Q	R	S	T	V	W	Y	
       M->M	M->I	M->D	I->M	I->I	D->M	D->D	Neff	Neff_I	Neff_D
       0	*	*	0	*	0	*	*	*	*	
M 1    *	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	1
       0	*	*	*	*	*	*	1000	0	0	

V 2    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	2
       0	*	*	*	*	*	*	1000	0	0	

S 3    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	3
       0	*	*	*	*	*	*	1000	0	0	

K 4    *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	4
       0	*	*	*	*	*	*	1000	0	0	

L 5    *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	5
       0	*	*	*	*	*	*	1000	0	0	

S 6    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	6
       0	*	*	*	*	*	*	1000	0	0	

Q 7    *	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	7
       0	*	*	*	*	*	*	1000	0	0	

L 8    *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	8
       0	*	*	*	*	*	*	1000	0	0	

Q 9    *	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	9
       0	*	*	*	*	*	*	1000	0	0	

T 10   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	10
       0	*	*	*	*	*	*	1000	0	0	

E 11   *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	11
       0	*	*	*	*	*	*	1000	0	0	

X 12   3706	5728	4211	4064	4839	3729	4763	4308	4069	3323	5509	4640	4464	4937	4285	4423	3815	3783	6325	4665	12
       *	*	*	*	*	*	*	1000	0	0	

L 13   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	13
       0	*	*	*	*	*	*	1000	0	0	

A 14   0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	14
       0	*	*	*	*	*	*	1000	0	0	

A 15   0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	15
       0	*	*	*	*	*	*	1000	0	0	

L 16   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	16
       0	*	*	*	*	*	*	1000	0	0	

L 17   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	17
       0	*	*	*	*	*	*	1000	0	0	

E 18   *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	18
       0	*	*	*	*	*	*	1000	0	0	

S 19   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	19
       0	*	*	*	*	*	*	1000	0	0	

G 20   *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	20
       0	*	*	*	*	*	*	1000	0	0	

L 21   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	21
       0	*	*	*	*	*	*	1000	0	0	

S 22   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	22
       0	*	*	*	*	*	*	1000	0	0	

K 23   *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	23
       0	*	*	*	*	*	*	1000	0	0	

E 24   *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	24
       0	*	*	*	*	*	*	1000	0	0	

A 25   0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	25
       0	*	*	*	*	*	*	1000	0	0	

L 26   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	26
       0	*	*	*	*	*	*	1000	0	0	

I 27   *	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	27
       0	*	*	*	*	*	*	1000	0	0	

Q 28   *	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	28
       0	*	*	*	*	*	*	1000	0	0	

A 29   0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	29
       0	*	*	*	*	*	*	1000	0	0	

L 30   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	30
       0	*	*	*	*	*	*	1000	0	0	

G 31   *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	31
       0	*	*	0	*	*	*	1000	0	0	

//