HHsearch 1.5 NAME d1g2ba_ FAM FILE d1g2ba_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1g2ba_.a3m DATE Tue Mar 9 07:06:28 2010 LENG 62 match states, 62 columns in multiple alignment FILT 100 out of 1833 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 7.0 EVD 0.4820 2.4188 SEQ >ss_dssp CCEEEEEEGGGEEECCCCSSSCEEEECSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEEC >sa_dssp EDEDBDABBEDBEDDEEEEEEDDACACEEBEDECEEBBDBEEDCEBCBDDDEDEECCDACBE >ss_pred CCCEECCCHHHEEECCCCCCCCEEEEEECCCCCCCCEEEECCCCEEEEEEEECCCEEEEEEC >ss_conf 97144242111377478888418999405378778662055998899999406987999969 >Consensus xxxxGxfPxxxvxxxxxxxxxxxxxAlydyxaxxxxeLsfxxGdxixVlxxxdxxWwxGxln >d1g2ba_ MDRQGFVPAAYVKKLDSGTGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVN >UniRef50_Q15052(149-203:776) Rho guanine nucleotide exchange factor 6 n=25 Tax=Euteleostomi RepID=ARHG6_HUMAN E=9e-05 s/c=0.87 id=21% cov=90% -------QSKTVEMTENGSHQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLN >UniRef50_UPI0000DB6B2F(189-236:363) PREDICTED: similar to CG10933-PA isoform 2 n=1 Tax=Apis mellifera RepID=UPI0000DB6B2F E=5e-05 s/c=1.01 id=21% cov=76% -----------VHPFFKDPSAGRYIVLYTFVARDENDVSVERGEFVTVLNRDDPDWF----- >UniRef50_Q9Z0R6-2(984-1055:1197) Isoform 2 of Intersectin-2 n=7 Tax=Eutheria RepID=Q9Z0R6-2 E=5e-09 s/c=0.86 id=23% cov=98% -ERTGIFPSNYVRPKDqenfgnasksgaSNKKPEIAQVTSAYAASGTEQLSLAPGQLILILKKNTSGWWQGEL- >UniRef50_C3Y473(389-461:1604) Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3Y473_BRAFL E=0.0005 s/c=0.62 id=19% cov=92% ----GLVPVGYLEVIKPGSetegkdlndksqqdtnSGKYARALFEFEPSVEADIRLVPDQLYRIIRVVDKDWMEVQ-- >UniRef50_Q4RZ53(300-349:376) Chromosome 7 SCAF14966, whole genome shotgun sequence. (Fragment) n=1 Tax=Tetraodon nigroviridis RepID=Q4RZ53_TETNG E=0.0007 s/c=0.90 id=16% cov=82% ------------KPPVPPQVEEEFYTIADFQTTIPDGISFQAGVKVEVIEKNASGWWYIQID >UniRef50_A7E3M7(206-275:292) Predicted NADPH oxidase organizer 1 (Fragment) n=4 Tax=Neognathae RepID=A7E3M7_CHICK E=3e-09 s/c=0.90 id=23% cov=100% -DKQiAWFPASYLEQLSLHkttqpslrPPGSLYFVMRAYEAQKADELSLNKGVVVEVVRRSDNGWWLIRYN >UniRef50_Q4P1K0(1184-1228:2138) Putative uncharacterized protein n=2 Tax=cellular organisms RepID=Q4P1K0_USTMA E=2e-05 s/c=1.12 id=20% cov=71% ------------------SRTVRVRTLYSYAAQRDEDLSFDENDVLSAHPAKDDDsaWWYGSL- >UniRef50_A3LSR6(627-676:702) Predicted protein n=1 Tax=Pichia stipitis RepID=A3LSR6_PICST E=3e-08 s/c=1.20 id=18% cov=82% -----------ITPVTKSAFVTKARARYSYKPQQHGELFFKKGWNMYVIHKQEDNWYLCEL- >UniRef50_UPI00016E0D77(725-790:910) UPI00016E0D77 related cluster n=1 Tax=Takifugu rubripes RepID=UPI00016E0D77 E=3e-09 s/c=0.95 id=21% cov=102% LDSQSILPESPAEqkekPEPPPLSGPRCVALFDYEGEEDDELTFSQGDVIALQELVGQEWGRGQIH # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * 1886 1056 * * * * * * 2008 * * 1 0 * * * * * * 2581 0 0 D 2 * * 985 2133 * * * * * * * 1906 * * * * * * * * 2 0 * * * * * * 5250 0 0 R 3 * * 5296 3897 * * * * 1536 5120 * * * 2551 1571 5226 * * * * 3 0 * * * * * * 6045 0 0 Q 4 * * 5206 2755 5686 * * 5146 2786 4915 * 4567 * 2506 2352 4980 3248 4380 * * 4 67 4452 * 0 * * * 6148 1353 0 G 5 4059 * 4033 * * 354 * * * * * * * * 5206 4567 5198 * * * 5 0 * * * * * * 6287 0 0 F 6 4516 * 5668 * 3381 * * 2991 5503 2731 3236 * * 5340 3925 4990 5836 * 2242 3554 6 0 * * * * * * 6287 0 0 V 7 4642 5240 * * 1020 * * 4170 * 4656 5568 * * * * 5913 * 1879 * 4808 7 0 * * * * * * 6484 0 0 P 8 * * * 5707 * * * * 5729 * * * 261 3902 6026 * * 4474 * * 8 42 5128 * 2885 210 * * 6863 1588 0 A 9 2009 * 5262 5154 * 6022 5767 5046 3657 3869 * 3667 6069 5914 4764 2051 6182 3581 * * 9 25 * 5878 * * * * 6916 0 0 A 10 3461 4907 4844 5709 * 5114 * 5042 4900 * * 1980 4516 4211 6002 1850 3557 * * * 10 0 * * * * * 0 6937 0 1000 Y 11 6063 * 5235 4361 3113 6095 3541 5050 * 4276 4891 4733 6167 4502 6410 4769 4439 * * 1366 11 67 4459 * 1936 437 0 * 7161 2190 1000 V 12 4073 * * * 5936 6100 * 3423 * 2362 4144 6290 4698 * 5205 4812 4654 1280 * * 12 56 4727 * 2361 312 * * 7188 2221 0 K 13 5527 * 3283 2047 * * 5446 * 2218 * * 5803 4628 3468 2869 4168 5124 * 6145 6408 13 76 4882 5869 2576 265 * * 7245 2148 0 K 14 4879 6429 5304 3751 5007 * 6272 4444 3772 3956 5053 5890 1550 4638 5016 4072 6496 3365 * * 14 17 6405 * 0 * * 0 7245 1000 1000 L 15 4812 5899 5490 4324 4890 * * 2852 3348 1936 4665 * 3740 5401 5830 4616 4872 3143 * * 15 49 6430 5502 0 * 0 * 7277 1000 1000 D 16 4314 * 2837 2765 5594 4927 5886 * 6487 6950 6634 5026 3470 4125 4837 2718 2763 5521 * 5124 16 75 4303 * 3329 151 0 * 7323 2983 1750 S 17 3657 6348 4489 4108 * 3747 5524 * 3418 4286 6526 5749 1998 4882 4662 2684 4893 6294 * 6685 17 83 4528 6305 3896 100 * * 7279 2741 0 G 18 4600 6428 3904 4768 * 3040 5635 5426 4480 7050 * 3507 2160 4750 5897 2652 4693 4313 * 6308 18 11 7026 * 3000 193 * 0 7264 1000 1000 T 19 3697 * 3970 3535 * 4718 6705 5284 4083 4062 5678 5329 3593 5550 5445 2480 2939 3494 * 6548 19 32 5492 * 4347 73 * 0 7264 1762 1000 G 20 4828 * 4629 4401 6524 3232 5089 5500 3228 5493 * 4114 2853 3930 5196 3008 3512 3848 * 6817 20 0 * * * * 0 * 7264 0 1000 K 21 3912 * 4655 3816 6398 2877 5382 4438 3917 4298 * 4529 4282 3091 3659 3799 4090 4231 * 6307 21 67 4909 6405 3378 146 * * 7289 2583 0 E 22 4121 6362 5907 2663 5306 5733 * 5328 3208 3614 6753 4586 3651 4183 3504 3559 3603 4604 * 6054 22 114 3908 6706 2829 219 * 0 7274 3603 1000 L 23 6394 * * 3493 5570 6473 5832 3647 3806 3489 5390 7135 5058 2840 2729 4637 4093 4094 5722 3622 23 71 4373 * 2725 237 * 0 7259 3152 1626 V 24 1849 4074 * 5032 3684 4514 * 6258 * 6595 6366 * * * * * * 1508 * 3015 24 29 6537 6787 1585 585 950 1052 7259 1000 1626 L 25 * * * 6253 4810 * * 2743 2751 3807 6689 * * 3774 1987 * 3776 2816 * 4976 25 35 5393 * 3442 139 * 0 7269 1693 1640 A 26 655 4383 * * * * * * * * * * 5905 * * 4481 4197 2478 5549 * 26 29 5669 * 2979 196 895 1113 7269 1651 1640 L 27 6657 * * 5549 * 6541 5911 2546 4738 1133 3916 5908 6566 5818 5219 6963 4449 3556 * * 27 0 * * * * 0 * 7274 0 1000 Y 28 4573 5316 6186 * 2445 * 4721 5535 4192 5990 6277 6047 * 6496 5721 5748 6698 6573 4347 1121 28 16 6485 * 3322 152 * * 7289 1000 0 D 29 3125 * 1138 3602 * 4777 6371 * 5413 * * 3407 3910 * * 3357 5788 * * * 29 38 5248 * 3238 162 * * 7289 1550 0 Y 30 * 4649 * 5562 1522 * 5314 * * 5383 * * * * * * * * 6262 920 30 35 5383 * 1736 515 * * 7289 1644 0 Q 31 3905 * 3618 2234 6186 * 6672 4653 3785 5605 5156 4439 4508 3780 4739 4013 3169 3916 * 6047 31 0 * * * * * * 7289 0 0 E 32 1333 * * 6669 * 2658 * * 4796 * 6307 6047 2210 5996 5155 3525 5364 * * * 32 18 6307 * 1585 585 * * 7289 1000 0 K 33 3786 * 3916 2815 * 6481 5017 5441 4929 * 5592 4528 * 2056 3903 3400 3281 4600 6512 * 33 0 * * * * * * 7289 0 0 S 34 4246 6777 3029 2300 * 3187 5190 4446 5788 5383 * 4015 * 3904 4297 3345 3672 5525 * 6745 34 26 5787 * 2298 328 * * 7289 1589 0 P 35 3573 * 1909 2297 6368 6596 5722 * 5382 6795 * 5806 2243 6806 6671 3378 6685 6813 6777 * 35 40 5182 * 2520 276 * * 7289 1853 0 R 36 4255 * 1480 3173 * 2707 * * 5138 * * 2996 * 4644 5299 4939 4015 6439 * * 36 14 6671 * 1000 1000 * * 7289 1000 0 E 37 5343 6307 2173 808 * 4995 5151 * 6672 * * * * 3672 * * * 5490 * * 37 10 7135 * 1000 1000 * * 7289 1000 0 V 38 * * * * * * * 2566 * 482 4551 * * * * * * 3785 * * 38 0 * * * * * * 7289 0 0 T 39 5395 5200 4741 4019 * 3856 * * 5828 6603 * 3561 3963 4703 5636 1274 2918 * * * 39 0 * * * * * * 7289 0 0 M 40 * * * * 952 * * 3645 * 1679 5105 * * * * * * 4013 * * 40 0 * * * * * * 7289 0 0 K 41 4037 5521 3937 2878 * 6368 5498 * 3117 6481 5889 4255 6603 3914 2850 2838 5087 3443 * 6719 41 0 * * * * * * 7289 0 0 K 42 2490 * 4589 2851 6720 5532 6314 5406 1683 6534 * * 5627 4438 3736 5004 4995 4367 * * 42 0 * * * * * * 7289 0 0 G 43 6471 * 3508 6405 * 318 * * 6110 * * 4264 * * * 5605 * * * * 43 0 * * * * * * 7289 0 0 D 44 3931 6398 983 2195 * * * * * * 5762 * * 3658 * 5606 6688 4065 6548 * 44 0 * * * * * * 7289 0 0 I 45 4766 6704 6342 5471 5619 * 6795 2008 3679 2956 5048 5499 * 5366 4060 7029 3874 2401 * 4957 45 0 * * * * * * 7289 0 0 L 46 5499 * * * 4833 * * 1307 * 2514 4872 * * * * * * 1803 * 4541 46 0 * * * * * * 7289 0 0 T 47 5081 6674 3319 2981 5509 * 3671 4024 3431 3879 6818 5207 * 5292 4413 5648 2734 3509 * 4484 47 0 * * * * * * 7289 0 0 L 48 6314 * 5543 5951 * 6372 6661 2041 6266 3359 6186 5842 * 6817 * * 7059 924 * * 48 26 6951 6719 1000 1000 * * 7289 1000 0 L 49 * 5355 5848 5313 5435 * 6544 2236 5726 1511 6675 6254 * 6630 6667 6516 3554 2775 * 4957 49 43 5106 * 699 1380 0 * 7274 2158 1000 N 50 4580 * 3090 2108 * 4121 5195 * 3452 * * 3476 * 3579 3407 3132 5425 * * 5181 50 81 4916 5532 700 1379 * * 7289 1751 0 S 51 4752 6788 4312 3344 * * 4995 4316 2065 6620 4587 6359 6750 2843 3081 4044 4289 5106 * 6273 51 45 6252 5834 601 1554 0 * 7267 1655 1638 T 52 5137 5595 3339 3247 6103 4383 4518 3336 3905 4412 * 4960 * 5388 6541 3071 3842 2536 * * 52 49 5626 6254 0 * 0 * 7292 1815 1380 N 53 5506 * 1309 2720 * 3749 * * * 5905 * 2898 4208 5565 * 3572 4711 * * * 53 25 5885 * 1599 578 0 * 7276 1712 1000 K 54 3922 * 1992 2858 * 3092 * * 4177 6799 * 4278 3103 3766 * 3673 4974 * * 6451 54 19 6266 * 0 * * * 7289 1000 0 D 55 6277 * 2125 3019 5284 1380 4783 * * * * 3362 6678 6536 6774 4648 * 6565 * 6512 55 0 * * * * * * 7289 0 0 W 56 * 5990 * * 4688 * * * * * * * * * 6192 * * * 102 * 56 17 * 6434 * * * * 7289 0 0 W 57 4843 6237 * * 3386 6598 * * * 3324 4109 * * 6540 * * 6327 6158 838 3451 57 0 * * * * 0 * 7267 0 1000 K 58 * * * 2491 5447 * * 5302 2548 3476 3745 * * 3853 3191 5747 4696 4135 4817 3183 58 0 * * * * * * 7077 0 0 V 59 4400 5218 * * * 492 * 4704 * * * * * * * * * 2504 * * 59 0 * * * * * * 7033 0 0 E 60 5938 * * 1619 * * 4542 * 3811 * * * * 2792 2310 3779 3378 5112 * * 60 0 * * * * * * 6937 0 0 V 61 * 4081 * * 3901 * * 2239 * 1463 * * * * * * * 2146 * 3767 61 0 * * * * * * 6763 0 0 N 62 * * 1906 * * * 3871 * * * * 589 * * * * * * * * 62 0 * * 0 * * * 5968 0 0 //