HHsearch 1.5 NAME d1fxla2 FAM FILE d1fxla2 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1fxla2.a3m DATE Mon Mar 8 16:55:35 2010 LENG 85 match states, 85 columns in multiple alignment FILT 116 out of 8308 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 8.8 EVD 0.4314 0.6677 SEQ >ss_dssp CGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC >sa_dssp EECDEEACACACDBCEEBDDEDADECADECCECDDBECCDDEEEDEBDABACADACDCECADEABECBDDDEBEEBEEDADADDE >ss_pred CCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCEECCCCCEEEEEEC >ss_conf 9878897799868879889999999996423343102312556554231268986899999999998479797683113898869 >Consensus SxxxxxxxixVxnlpxxxtxxxlxxxfxxxgxvxxxxxxxxxxxxxxxxxafvxfxxxxxAxxaixxlxxxxxxgxxxxixvxxA >d1fxla2 SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA >UniRef50_B9HVB3(175-258:894) Predicted protein n=14 Tax=Viridiplantae RepID=B9HVB3_POPTR E=2e-08 s/c=0.72 id=19% cov=100% -AEKPQTTVYIGKIAPSVENDFMMSLLQFCGPVKSWKRPQDPANGTPRGFGFCEFESAEGVLRALRLLTKFNIDGQELMLNVNQA >UniRef50_Q5CVN7(114-188:416) Splicing factor SRP40 like 2x RRM domains (Fragment) n=3 Tax=Cryptosporidium RepID=Q5CVN7_CRYPV E=0.0002 s/c=0.63 id=16% cov=82% ----KHFRVCVFNLDDNASWRDLKDYGRQIGEVNYSAVF----HYQGQKVGVVEYLTVEEMKRALEEIPNLPFLGKS-------- >UniRef50_Q6CS06(364-441:443) KLLA0D05016p n=2 Tax=Kluyveromyces lactis RepID=Q6CS06_KLULA E=6e-07 s/c=0.71 id=18% cov=93% ----RNSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGH-FTRNSYCQFETPEDADICISKLDKYSY--GDHELKVTYA >UniRef50_Q6ICX4(8-77:432) Polypyrimidine tract-binding protein homolog 3 n=18 Tax=Embryophyta RepID=PTBP3_ARATH E=0.0002 s/c=0.66 id=17% cov=84% --------VHVRNVGHEISENDLLQLFQPFGVITKLV------MLRAKNQALLQMQDVSSAVSALQFFTNVQPTIRGRNVYVQF- >UniRef50_Q5KLI7(236-324:355) RNA binding protein, putative n=3 Tax=Fungi/Metazoa group RepID=Q5KLI7_CRYNE E=0.0005 s/c=0.51 id=18% cov=98% SEEDSEATIFVANLPFSVDDAALTSIFNNLSIQVKKAKVAVRTFRRGNDrrvsskgFGFVDLEDPSQREEAVQKVDGTLVEGRNITAKV--- >UniRef50_Q8TBY0(137-221:533) Probable RNA-binding protein 46 n=28 Tax=Chordata RepID=RBM46_HUMAN E=0.0003 s/c=0.54 id=18% cov=99% --SLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPsaTDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWA >UniRef50_Q39244(12-95:250) U1snRNP-specific protein n=14 Tax=Viridiplantae RepID=Q39244_ARATH E=0.0003 s/c=0.55 id=17% cov=99% SEVSPNQTIYINNLNEKVKLDELKKSLNAvFSQFGKILEILAFKTFKHKGQAWVVFDNTESASTAIAKMNNFPFY--DKEMRIQYA >UniRef50_B8PF64(470-554:895) Predicted protein n=2 Tax=Postia placenta Mad-698-R RepID=B8PF64_POSPM E=0.0003 s/c=0.55 id=18% cov=96% SRTVDPTSVFVGGLemfgPDAWNETKVRAHFEKY--GTIEKLQFVSPLNQRTAFAFIKFDVAEAATCAIENEHNCMYNGRQMRVQLR-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 4589 * * * * * * * * * * * * * * 134 4403 * * * 1 0 * * * * * * 6655 0 0 A 2 1838 * 5149 2418 * * 5400 * * * 5281 * * * 3995 1733 3442 * * * 2 0 * * * * * * 7624 0 0 S 3 5836 * 3232 2591 * 5153 5686 * 4084 4796 5840 4565 2741 * 5711 2149 3363 5914 * * 3 0 * * * * * * 8098 0 0 I 4 5887 5579 5753 5893 4992 * * 2540 4833 2011 3222 5488 * 4776 * 4898 * 2054 * * 4 19 6289 * 0 * * * 8193 1000 0 R 5 6126 5452 2496 2904 * * 5585 5314 2469 * * 6204 2977 3120 3372 5192 4450 * * * 5 0 * * * * * * 8426 0 0 D 6 6425 * 3029 2561 * 3656 6085 * 3323 6456 * 2090 3915 4677 6362 4004 4291 5316 * * 6 16 6478 * 2807 222 * * 8583 1000 0 A 7 3948 4186 * 6976 6146 4696 4534 6620 3093 * * 3321 6160 6632 2374 3487 2631 5480 5455 4788 7 53 5195 6839 747 1307 * * 8703 1908 0 N 8 4646 6803 * 5592 * * * 4998 2773 * * 3547 * 4926 2719 2635 1694 6331 * * 8 102 3877 * 1216 812 0 * 8816 3877 1000 L 9 * 6449 * * * * * 2015 * 1352 6789 * * * * * * 1604 * 6432 9 0 * * * * * * 8869 0 0 Y 10 6516 5455 * * 1468 * 4911 4747 * 4701 5541 * * 6765 4786 * * 4387 3819 1689 10 0 * * * * * * 8879 0 0 V 11 5636 5719 * * 4167 * * 1731 * 3415 4854 * * * * * * 1072 * * 11 0 * * * * * * 8921 0 0 S 12 4361 6485 4197 4497 6540 1540 * * 3014 * * 5810 * 5462 4241 2457 4506 5346 6746 6736 12 16 6458 * 2807 222 * * 8926 1000 0 G 13 * 6512 3748 * * 2049 5838 * 5818 * * 985 6606 5387 5939 4480 6875 * * 5126 13 0 * * * * * * 8931 0 0 L 14 6582 * * * 4141 * * 2121 * 906 4799 * * * * * * 3118 * 5770 14 22 6047 * 2000 415 * * 8936 1124 0 P 15 4228 6923 3294 7119 6701 4853 5132 * 5981 5714 * 3383 1085 6733 * 3489 4383 * * 6967 15 10 7119 * 0 * * * 8936 1000 0 K 16 5777 * 4509 4580 3355 * 4650 4548 3015 4248 5686 5957 2595 4851 4526 4110 4031 * 5211 3130 16 0 * * * * * * 8936 0 0 T 17 4436 5285 2268 3678 4717 4227 4796 5662 4638 5280 * 3569 * 6472 3517 2775 4637 6913 5219 5319 17 14 6693 * 0 * * * 8936 1000 0 M 18 3269 5353 * 6561 6847 * 6456 3320 5276 3661 3689 * * * * 5633 2314 2070 3806 5176 18 11 7048 * 0 * * * 8936 1000 0 T 19 5334 6664 3014 4122 * 5101 * * 3119 * * 3787 5525 4141 6076 3116 1478 * * * 19 17 6456 * 2000 415 * * 8936 1000 0 Q 20 4725 6098 2848 1518 * * 5547 5846 3368 4801 * 4806 5864 4422 4223 4830 4482 4917 5505 * 20 31 5537 * 1816 482 * * 8936 1643 0 K 21 3081 * 2720 2138 6871 * 5113 5777 4532 * 6003 4280 6704 3433 4071 3500 3969 * 6679 6245 21 0 * * * * * * 8936 0 0 E 22 4396 * 1670 2250 5837 4460 4767 5002 3880 6693 6936 5468 * 4041 4945 4687 5622 5760 * 5787 22 27 5768 * 1585 585 * * 8936 1635 0 L 23 * * * * 5279 * * 1870 * 960 5250 * * * * * * 2641 * * 23 14 6704 * 4000 93 * * 8936 1000 0 E 24 4884 5931 6046 3773 6679 5787 4138 6139 2498 4741 3637 5771 * 3956 2126 6800 3772 5019 * 4537 24 0 * * * * * * 8936 0 0 Q 25 4619 6931 2455 2174 * 6438 4850 6843 3547 6552 5714 3639 * 3183 4274 3330 5230 6840 * * 25 26 6731 6842 2322 322 * * 8936 1000 0 L 26 4030 5196 * 4578 2870 * 3563 2954 5906 2132 4585 * * * 5817 5859 5251 3552 * 3536 26 15 6555 * 2000 415 0 * 8931 1000 1000 F 27 6890 5833 * 6817 734 6549 * 5158 * 2451 4551 * * * * * * 4823 5980 4361 27 68 4775 6762 1496 632 * * 8936 2816 0 S 28 3558 * 4796 3038 6839 3731 * * 3188 5942 6453 3850 * 3985 3343 2000 4861 7128 * 6232 28 37 5321 * 2429 296 * 0 8922 2324 1000 Q 29 4216 6833 4271 3396 6770 5732 5873 * 2389 6641 5229 4581 3502 2890 3896 3226 3855 * 6655 * 29 75 4645 6507 989 1011 * 0 8922 3131 1000 Y 30 4880 4061 * 6877 1528 6451 4224 3513 * 3633 * 6714 6407 * * 4599 4951 4356 * 2523 30 135 4776 4237 360 2179 * 0 8908 2764 1678 G 31 4305 5711 6018 5164 6479 706 * 5482 5919 6657 6834 4631 5888 * 5097 4801 6693 4016 * 6434 31 43 5685 6678 1461 651 668 1432 8855 1735 4278 R 32 4234 * 4480 2786 * 4245 5325 3972 3240 4871 * 4625 2983 4216 3842 4256 3349 4853 * * 32 53 5238 6704 1617 569 1897 451 8888 2403 2709 I 33 5157 * 5061 5051 5249 5574 * 2168 6775 3625 * 6432 3923 5774 5798 5841 5518 1428 * 5198 33 63 4553 * 3286 156 1858 466 8882 3264 2728 I 34 4230 5940 3791 2947 * 5220 6813 2857 3191 3750 * 5774 * 4212 4534 4256 4179 3074 6447 5819 34 24 7011 6867 1000 1000 1544 606 8892 1000 2301 T 35 4198 * 3650 3525 6454 4012 5183 3780 3338 5853 * 3999 5000 4181 3863 2823 5396 3865 6486 5236 35 61 * 4588 * * 626 1506 8900 0 2215 S 36 3779 4029 5635 5628 4578 6452 * 2811 4031 4497 5785 5733 5041 5710 4388 4251 5075 2029 4999 4982 36 71 4676 6806 2359 313 2164 364 8879 2962 3371 R 37 3824 * 3485 5410 4845 5408 4786 3071 2730 4150 * 4048 6748 5333 3262 5312 5160 3038 6356 6649 37 12 * 6925 * * 1268 774 8883 0 3260 I 38 * 6247 5699 5258 3908 6617 * 2646 3376 2397 4503 5193 4692 6715 4825 5332 5128 2548 6681 5078 38 12 6863 * 1000 1000 954 1047 8892 1000 2823 L 39 4895 5108 6932 4592 4466 5474 5541 3157 4305 3304 3514 5027 3642 5321 3871 5674 5472 2534 * 5150 39 43 6514 5789 2322 322 * 0 8900 1000 1815 V 40 5879 6205 * 5866 5398 4372 7112 5236 3054 3674 5715 4270 3580 5330 2546 6026 3316 3354 6645 3762 40 79 5734 4861 3387 145 * 0 8874 1851 2995 D 41 4408 6892 2139 3763 6620 5212 3496 4926 3523 * * 3713 4213 4958 3763 3792 5613 4678 * 5038 41 12 * 6911 * * 192 3003 8858 0 4584 Q 42 4095 6895 3626 4356 4353 5314 4828 4077 2916 3516 * 5287 3424 4437 3638 3839 4860 4887 * 4990 42 10 7182 * 3170 170 939 1064 8910 1000 1754 V 43 4054 6909 3948 3823 5840 4452 4527 6443 2788 4916 * 3541 4426 3568 3807 3152 4436 5562 * 4965 43 43 5604 6866 2866 213 0 * 8914 1770 1000 T 44 4344 * 3372 6873 4512 3205 4631 5817 3956 5057 5012 3111 4263 5901 5140 3222 2962 5842 6461 4937 44 24 7230 6713 0 * 0 * 8938 1000 1000 G 45 4985 * 4839 5959 4837 1907 5129 5552 3474 6804 6757 3160 4621 4861 4092 3685 3969 4822 7115 5158 45 79 5248 5228 773 1269 * 0 8921 2288 1000 V 46 5250 * 5666 6429 5037 4955 4663 5195 2069 5184 5861 3677 4355 3970 2784 4213 4070 4750 * 4531 46 55 6880 5125 2807 222 0 * 8901 1000 2865 S 47 4766 * 4474 5104 4289 3506 3145 5028 4078 * 6688 3434 2868 5886 4149 2401 4790 6768 * * 47 48 6080 5799 1601 577 1494 633 8893 1759 2415 R 48 5236 6692 5892 6703 4385 5221 4774 4985 2751 3591 5166 5249 * 4333 2019 5301 3124 5008 * 4592 48 27 6692 6837 0 * 948 1054 8896 1000 2846 G 49 5040 4294 6065 6717 * 1265 5861 6765 4482 5088 6525 4011 4339 5959 3487 5566 4540 4332 6806 5198 49 61 4600 * 2310 325 * 0 8904 3393 2300 V 50 4976 3593 4481 5996 2017 6315 6999 4767 * 4347 4928 * * 5209 4712 4397 4154 4521 6701 2206 50 39 5218 * 1484 638 1565 595 8904 2287 2300 G 51 990 3774 * * 6541 1943 * 5024 * 6443 * * * * * 4901 * 3956 * 6317 51 12 6887 * 1585 585 924 1080 8920 1000 1720 F 52 6832 6818 * 6544 997 * 5207 4070 6893 3148 6430 * * 5619 * 6915 6614 5160 4833 2743 52 0 * * * * 0 * 8921 0 1000 I 53 3607 4443 * * 6038 * * 1742 * 3491 5578 * * * * * * 1159 * * 53 0 * * * * * * 8936 0 0 R 54 5125 * 4123 1870 6309 5880 * 5062 3423 5147 5412 4687 * 3585 4086 5386 2698 4039 6900 7051 54 0 * * * * * * 8936 0 0 F 55 * 5691 * * 888 * * * * 3791 3600 * * * * * * 4668 * 2021 55 0 * * * * * * 8936 0 0 D 56 3135 * 3263 2608 6989 5292 4813 6273 3008 5132 6913 4883 4641 5666 4034 3522 3934 4677 * 5124 56 0 * * * * * * 8936 0 0 K 57 6950 * 2518 4546 5704 * 5355 * 4858 6900 * 2952 * * 4260 1833 2323 6047 * 6498 57 0 * * * * * * 8936 0 0 R 58 3617 * 5633 3459 4467 6438 4153 4192 3070 4882 6843 5828 2789 4373 3391 4695 6093 3242 * 6245 58 0 * * * * * * 8936 0 0 I 59 3363 7111 2994 1662 6559 7082 6456 6183 4194 5875 4219 6745 * 3796 4540 3461 4174 6053 * * 59 0 * * * * * * 8936 0 0 E 60 3257 5889 2042 2799 5877 5768 4440 5857 * 6638 6245 4187 * 3679 6950 2773 4316 4944 * * 60 0 * * * * * * 8936 0 0 A 61 550 5743 * * 6763 * * 5292 6888 6535 5200 * 6899 * 6020 3881 4730 3666 * 6825 61 12 6888 * 0 * * * 8936 1000 0 E 62 3299 6777 2974 2503 * * * 4712 3337 4037 5193 5349 * 2973 4433 4418 3933 6057 * 4844 62 11 * 6977 * * * * 8936 0 0 E 63 2937 6039 5624 3636 * 6880 * 5694 2263 5312 5433 4263 * 4913 2535 3668 4139 4473 * 5019 63 0 * * * * * 0 8939 0 1000 A 64 670 3729 * * 5319 6754 * 4408 * 3932 6900 * * * * 5644 * 3049 * * 64 34 * 5442 * * 0 * 8939 0 1000 I 65 4341 5797 * 6967 6167 * * 1882 4454 2017 3710 * * * 4509 6809 * 2331 6738 6728 65 42 5544 7095 1585 585 0 * 8932 1776 2345 K 66 3860 * 3965 2292 * 7179 6850 4570 2966 4365 5384 4256 6987 3084 2817 4241 4972 * * * 66 40 * 5197 * * 0 * 8936 0 1000 G 67 2939 * 5788 3266 5161 6128 5557 5285 3205 3429 6258 3503 * 3097 4886 3539 3890 4944 * 5700 67 39 5908 6664 1637 560 0 * 8906 1753 2379 L 68 5643 6403 * 5398 3267 5743 5698 4697 5801 1174 3062 * * * * 4515 5210 4593 * 3814 68 0 * * * * 0 * 8918 0 1000 N 69 6309 * 2223 6034 * 5415 2812 * 4795 * * 1621 6549 4246 5144 3225 5584 * * 6438 69 22 7221 6847 0 * * * 8936 1000 0 G 70 6596 6805 3968 4108 * 1301 * * 4721 5061 * 2305 5670 4831 4149 4623 5695 * * 6412 70 23 5952 * 567 1622 * 0 8931 1831 1000 Q 71 4772 6042 * 5345 3880 4146 5155 4759 2608 4163 6027 4771 * 3888 3354 3615 3421 4127 * 3946 71 16 6465 * 0 * 0 * 8931 1000 1000 K 72 * * 5938 3168 4469 6559 5140 4575 2875 3447 4947 3792 3697 4166 4581 5140 3585 3655 6245 4842 72 10 7111 * 0 * * * 8936 1000 0 P 73 5692 5865 * * 2093 * 6931 2062 6738 2531 4612 5801 4551 * * 6513 * 3515 5275 3769 73 70 7115 4629 1585 585 * * 8936 1000 0 S 74 5588 * 2830 3269 4665 2849 5425 6264 3454 4048 4023 3612 4280 4558 4664 6077 6581 6514 * 4164 74 95 5735 4467 612 1532 * 0 8914 1754 3220 G 75 * 6587 3527 3930 5034 695 * 4957 6759 * * 4012 6154 * * 5107 * 4561 * * 75 49 * 4895 * * 730 1333 8914 0 4651 A 76 3855 5654 5479 * 5609 3450 5653 * 2835 6832 5640 3911 * 4318 1788 3181 5745 * 5368 5135 76 54 5710 5832 1585 585 877 1135 8910 1719 3957 T 77 5193 6484 3550 3385 6620 3028 * 4854 2874 5814 6304 3163 5803 3975 4746 3529 3440 4757 * * 77 90 * 4052 * * 571 1613 8798 0 3066 E 78 6250 5592 * 6891 * 6774 4324 2870 2871 2254 4121 6476 4953 4547 2729 * 5426 4215 6131 5085 78 50 6532 5446 1585 585 2349 315 8739 1000 3734 P 79 4174 * * 4988 5812 * 6547 6473 2262 5117 6258 4954 2400 4956 2833 4476 3016 4567 * 5794 79 20 * 6152 * * 0 * 8684 0 4215 I 80 6609 * * * 5235 * * 1792 * 1486 3711 6733 * * * * 6471 2183 * * 80 0 * * * * 0 * 8737 0 1000 T 81 6351 * * 4253 4414 6185 5527 4800 3059 6474 4513 5358 * 3885 1727 3740 3479 4152 6371 6064 81 0 * * * * * * 8689 0 0 V 82 4816 5413 * * 6274 * * 2306 * 3165 4209 * * * 5267 * * 904 * * 82 0 * * * * * * 8496 0 0 K 83 4908 * 3607 3654 * 5716 5972 * 2470 * * 3503 * 3023 2641 2195 * * * * 83 0 * * * * * * 8308 0 0 F 84 * * * * 1751 * 5679 4206 4791 3855 * * 5315 4841 4326 * * * 2117 2445 84 0 * * * * * * 8049 0 0 A 85 0 * * * * * * * * * * * * * * * * * * * 85 0 * * 0 * * * 7409 0 0 //